Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Forward (+)

5500564 .. 5509693

Gene Structure 9130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04340.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTACAGGACCCAATATTCCCTCCTCCAAAACCACCAAAATTCATCCTTCAATTCAAAAGAAAAAGCTCTCTCTTCCCACCAAAATCTGGGTTTTTTCTTTCCGTTCTCAAAGAGGGCTTCAATGGAGGTAGAGCAGAAGCAAGCTCAAGTGATCGAGCACTTCGTGAAGCAAGCCTCTATTCTCCAGGGGTCCTCTCTCGTCAGCCTCATAGTCCAACTCACCTCCCATTCTTCTCTTTTCGCTTTCTCTGAGATTTTGGCTGTCCCCAATGTGCTCGAGCTTCAAGGAACTGGATATGCTGTATACATTGATCTGCTTCGCCTCTTTGCTCATGGAACATGGAGCGACTATAAGAGTAATGCTAGCCGTCTTCCACCACTAGTCCCAGATCAAATCACCAAGCTGAAGCAACTTACTGTGCTTTCTCTAGCTGAGATGAACAGGGTTATATCATACGAACAACTTCTTGAGCAGCTTGATCTTTCAAATGTGCGCGAACTTGAAGACTTTCTTATCAATGATTGCATGTATGCGGGCATAGTCAAAGGGAAGTTGGATCATTTGAGAAGATCTTTCGAGGTTCAGTTTGCAGCTGGGAGGGATTTGAGACCTGGACAACTAGGGAATCTGATACAGACTTTAGATGATTGGCTAGACACTACAAACAATGCACTTCTGACAATTGAAGAGAAGATCGATTGGGCAGATAAAAAGTGTGAGTTGGATGCAATACACAAAAAGGCAGTCAAGGACAGGGTGGAAGAAGTAAAGAAGTCTGTCAATAACAAGGGTGGGCGAGACTTCCAAGCCATTGATGACATTCTGTTTGGTGAAACAGCTGGACTAATGGACTATGAAGAAGATCGAACCCGAACCAAGAGGAGGAGGTCGCCAATAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

302

Amino Acids

34.31

Weight (kDa)

6.2

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	1 cut(s)	498
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	428
AdeI	CACNNNGTG	1 cut(s)	166
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	88, 885
AgsI	TTSAA	7 cut(s)	52, 57, 123, 287, 489, 506, 689
AhlI	ACTAGT	1 cut(s)	382
AjnI	CCWGG	2 cut(s)	186, 613
AluBI	AGCT	8 cut(s)	68, 146, 283, 406, 434, 478, 596, 842
AluI	AGCT	8 cut(s)	68, 146, 283, 406, 434, 478, 596, 842
Alw21I	GWGCWC	2 cut(s)	162, 279
Alw26I	GTCTC	2 cut(s)	604, 795
AlwI	GGATC	1 cut(s)	567
Ama87I	CYCGRG	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	475, 593
ApoI	RAATTY	1 cut(s)	40
ArsI	GACNNNNNNTTYG	4 cut(s)	732, 764, 812, 844
Asp700I	GAANNNNTTC	2 cut(s)	465, 510
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	2 cut(s)	9, 192
AsuHPI	GGTGA	3 cut(s)	214, 391, 845
AsuNHI	GCTAGC	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	9, 192
BbsI	GAAGAC	2 cut(s)	365, 513
Bbv12I	GWGCWC	2 cut(s)	162, 279
BbvI	GCAGC	2 cut(s)	487, 605
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	2 cut(s)	188, 615
BcoDI	GTCTC	2 cut(s)	604, 795
BcuI	ACTAGT	1 cut(s)	382
BfaI	CTAG	5 cut(s)	366, 383, 431, 623, 656
BglII	AGATCT	1 cut(s)	572
BisI	GCNGC	2 cut(s)	476, 594
BlsI	GCNGC	2 cut(s)	477, 595
Bme1390I	CCNGG	2 cut(s)	188, 615
Bme18I	GGWCC	2 cut(s)	9, 192
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	9, 192
BmiI	GGNNCC	2 cut(s)	11, 193
BmrFI	CCNGG	2 cut(s)	188, 615
BmsI	GCATC	1 cut(s)	718
BmtI	GCTAGC	1 cut(s)	369
BpiI	GAAGAC	2 cut(s)	365, 513
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	132, 491
Bsa29I	ATCGAT	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 885
Bse1I	ACTGG	1 cut(s)	298
BseBI	CCWGG	2 cut(s)	188, 615
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	44, 733
BseLI	CCNNNNNNNGG	2 cut(s)	88, 885
BseMII	CTCAG	2 cut(s)	243, 426
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	3 cut(s)	14, 898, 901
BseXI	GCAGC	2 cut(s)	487, 605
BseYI	CCCAGC	1 cut(s)	596
Bsh1236I	CGCG	1 cut(s)	498
BshVI	ATCGAT	1 cut(s)	699
BsiHKAI	GWGCWC	2 cut(s)	162, 279
BsiHKCI	CYCGRG	1 cut(s)	278
BslFI	GGGAC	2 cut(s)	251, 371
BslI	CCNNNNNNNGG	2 cut(s)	88, 885
BsmAI	GTCTC	2 cut(s)	604, 795
BsmFI	GGGAC	2 cut(s)	251, 371
Bso31I	GGTCTC	1 cut(s)	604
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	162, 279
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	8 cut(s)	153, 313, 391, 481, 559, 572, 696, 865
BspACI	CCGC	1 cut(s)	536
BspCNI	CTCAG	2 cut(s)	244, 427
BspDI	ATCGAT	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	11, 193
BspOI	GCTAGC	1 cut(s)	369
BspPI	GGATC	1 cut(s)	567
BspTNI	GGTCTC	1 cut(s)	604
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	8 cut(s)	153, 313, 391, 481, 559, 572, 696, 865
BssNAI	GTATAC	1 cut(s)	307
Bst1107I	GTATAC	1 cut(s)	307
Bst2UI	CCWGG	2 cut(s)	188, 615
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	2 cut(s)	79, 684
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	4 cut(s)	144, 174, 367, 538
BstDEI	CTNAG	2 cut(s)	252, 435
BstF5I	GGATG	2 cut(s)	44, 733
BstFNI	CGCG	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	8 cut(s)	156, 316, 394, 484, 562, 575, 699, 868
BstMAI	GTCTC	2 cut(s)	604, 795
BstMBI	GATC	8 cut(s)	153, 313, 391, 481, 559, 572, 696, 865
BstNI	CCWGG	2 cut(s)	188, 615
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	2 cut(s)	186, 613
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	2 cut(s)	487, 605
BstV2I	GAAGAC	2 cut(s)	365, 513
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BstZ17I	GTATAC	1 cut(s)	307
Bsu15I	ATCGAT	1 cut(s)	699
BsuTUI	ATCGAT	1 cut(s)	699
BtsCI	GGATG	2 cut(s)	44, 733
Cac8I	GCNNGC	4 cut(s)	144, 174, 367, 538
CfoI	GCGC	1 cut(s)	498
Cfr13I	GGNCC	2 cut(s)	9, 192
ClaI	ATCGAT	1 cut(s)	699
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	335, 342, 529
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	252, 435
DpnI	GATC	8 cut(s)	155, 315, 393, 483, 561, 574, 698, 867
DpnII	GATC	8 cut(s)	153, 313, 391, 481, 559, 572, 696, 865
DraIII	CACNNNGTG	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	79, 684
EarI	CTCTTC	2 cut(s)	79, 684
Eco31I	GGTCTC	1 cut(s)	604
Eco47I	GGWCC	2 cut(s)	9, 192
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	278
EcoO109I	RGGNCCY	2 cut(s)	9, 192
EcoRII	CCWGG	2 cut(s)	186, 613
FaeI	CATG	3 cut(s)	338, 345, 532
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	2 cut(s)	251, 371
FatI	CATG	3 cut(s)	334, 341, 528
FauI	CCCGC	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	476, 594
FokI	GGATG	2 cut(s)	31, 740
Fsp4HI	GCNGC	2 cut(s)	476, 594
FspBI	CTAG	5 cut(s)	366, 383, 431, 623, 656
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	2 cut(s)	476, 594
GsaI	CCCAGC	1 cut(s)	600
GsuI	CTGGAG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	3 cut(s)	338, 345, 532
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HinfI	GANTC	1 cut(s)	628
HphI	GGTGA	3 cut(s)	214, 391, 845
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	253, 633, 681
Hpy188III	TCNNGA	2 cut(s)	166, 470
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	4 cut(s)	528, 593, 674, 731
HpyF3I	CTNAG	2 cut(s)	252, 435
Hsp92II	CATG	3 cut(s)	338, 345, 532
HspAI	GCGC	1 cut(s)	496
Kzo9I	GATC	8 cut(s)	153, 313, 391, 481, 559, 572, 696, 865
LmnI	GCTCC	1 cut(s)	345
Lsp1109I	GCAGC	2 cut(s)	487, 605
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	5 cut(s)	366, 383, 431, 623, 656
MalI	GATC	8 cut(s)	155, 315, 393, 483, 561, 574, 698, 867
MboI	GATC	8 cut(s)	153, 313, 391, 481, 559, 572, 696, 865
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	1 cut(s)	572
MhlI	GDGCHC	2 cut(s)	162, 279
MluCI	AATT	3 cut(s)	40, 52, 684
MmeI	TCCRAC	3 cut(s)	241, 537, 705
MroXI	GAANNNNTTC	2 cut(s)	465, 510
MspA1I	CMGCKG	2 cut(s)	596, 842
MspR9I	CCNGG	2 cut(s)	188, 615
MunI	CAATTG	1 cut(s)	684
MvaI	CCWGG	2 cut(s)	188, 615
MvnI	CGCG	1 cut(s)	498
NdeII	GATC	8 cut(s)	153, 313, 391, 481, 559, 572, 696, 865
NheI	GCTAGC	1 cut(s)	365
NlaIII	CATG	3 cut(s)	338, 345, 532
NlaIV	GGNNCC	2 cut(s)	11, 193
NspI	RCATGY	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdmI	GAANNNNTTC	2 cut(s)	465, 510
PfeI	GAWTC	1 cut(s)	628
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	477, 595
PpuMI	RGGWCCY	2 cut(s)	9, 192
Psp5II	RGGWCCY	2 cut(s)	9, 192
Psp6I	CCWGG	2 cut(s)	186, 613
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	2 cut(s)	186, 613
PspN4I	GGNNCC	2 cut(s)	11, 193
PspPI	GGNCC	2 cut(s)	9, 192
PspPPI	RGGWCCY	2 cut(s)	9, 192
PspXI	VCTCGAGB	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	572
PvuII	CAGCTG	2 cut(s)	596, 842
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	476, 594
Sau3AI	GATC	8 cut(s)	153, 313, 391, 481, 559, 572, 696, 865
Sau96I	GGNCC	2 cut(s)	9, 192
ScrFI	CCNGG	2 cut(s)	188, 615
SduI	GDGCHC	2 cut(s)	162, 279
SfaNI	GCATC	1 cut(s)	718
Sfr274I	CTCGAG	1 cut(s)	278
SinI	GGWCC	2 cut(s)	9, 192
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	3 cut(s)	147, 278, 470
SmoI	CTYRAG	3 cut(s)	147, 278, 470
SpeI	ACTAGT	1 cut(s)	382
Sse9I	AATT	3 cut(s)	40, 52, 684
SsiI	CCGC	1 cut(s)	536
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	5 cut(s)	366, 383, 431, 623, 656
StyD4I	CCNGG	2 cut(s)	186, 613
TaaI	ACNGT	1 cut(s)	421
TaqI	TCGA	5 cut(s)	156, 279, 579, 699, 868
TasI	AATT	3 cut(s)	40, 52, 684
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	628
TseI	GCWGC	2 cut(s)	475, 593
TspDTI	ATGAA	3 cut(s)	33, 455, 873
TspGWI	ACGGA	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	2 cut(s)	9, 192
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	2 cut(s)	465, 510
XspI	CTAG	5 cut(s)	366, 383, 431, 623, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.