Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

8321561 .. 8325384

Gene Structure 3824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g09110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGATTGAGCAAAAGCAAGAGGAGGTCATTGATCACTACGTGAAGCAAGCCTCATCACTAGATGGCTCCGCTCTCGGTCCTCTCGTCGCAGAAGTCACCTCCCACCCTGCCCTTTTTGCCTTTTCGGAAATTATCGCTGTCCCTAATGTTCTTCAGCTTGAAGGAACTGAAAATTCTGTGTACCTCGATGTGCTTCGATTGTTTGCACATGGCACATGGAGTGATTACAAGAGTGATGCCAGTCGTCGTCCACAACTGGTCCCTGATCAAGTCTTAAAGCTGAAACAGCTTACTGTTCTTACACTGGCTGAGACAAACAAGGTACTACCGTATCATCAACTTATGCAGGAGTTAGATGTTATCAATGTACGAGAGCTCGAGGATTTTCTCATTAATGAGTGCATGTATGTGGGCATACTAAGAGGAAAGCTGGACCAGTTGCGAAAATGCTTTGAGGTCCAGTTTGCTGCAGGGAGAGATCCGAGACCTGGACAACTTGGGAGTATGATTCAAACACTGTCAAACTGGTTGGATACCTCAAGCAATCTTCTTATCTCAATTCAAGAAAAGATGAAGTGGGCTGATACTATGACTGAAGTGGCCAAGGAACACAAGAAAGAAGTTGGAAATAGGGTGGAAGAAGTAAAGAAGTCGATTTCCATCAAGAAGTTCGCTACTGTAAGCAGGCCGACATTGACTTCCGGGGGCATGAGGAGATCTACTCCGAACCTGGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.88

Weight (kDa)

5.66

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	74
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	140, 618
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	3 cut(s)	185, 327, 372
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	3 cut(s)	164, 515, 566
AjnI	CCWGG	2 cut(s)	490, 732
AluBI	AGCT	5 cut(s)	160, 283, 292, 379, 433
AluI	AGCT	5 cut(s)	160, 283, 292, 379, 433
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	308, 481
AlwI	GGATC	1 cut(s)	476
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	2 cut(s)	603, 689
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	175
AseI	ATTAAT	1 cut(s)	396
AspS9I	GGNCC	4 cut(s)	80, 262, 436, 460
AsuC2I	CCSGG	1 cut(s)	706
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	4 cut(s)	80, 262, 436, 460
BaeI	ACNNNNGTAYC	4 cut(s)	317, 317, 350, 350
BalI	TGGCCA	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	59, 671
BciT130I	CCWGG	2 cut(s)	492, 734
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	2 cut(s)	34, 268
BcnI	CCSGG	1 cut(s)	706
BcoDI	GTCTC	2 cut(s)	308, 481
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	529
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	3 cut(s)	492, 706, 734
Bme18I	GGWCC	4 cut(s)	80, 262, 436, 460
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	4 cut(s)	80, 262, 436, 460
BmiI	GGNNCC	2 cut(s)	70, 264
BmrFI	CCNGG	3 cut(s)	492, 706, 734
BmsI	GCATC	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
BpuEI	CTTGAG	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	706
BsaAI	YACGTR	1 cut(s)	43
BsaBI	GATNNNNATC	1 cut(s)	662
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	606, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	6 cut(s)	243, 264, 312, 439, 463, 533
Bse8I	GATNNNNATC	1 cut(s)	662
BseBI	CCWGG	2 cut(s)	492, 734
BseDI	CCNNGG	2 cut(s)	606, 705
BseJI	GATNNNNATC	1 cut(s)	662
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	6 cut(s)	243, 264, 312, 439, 463, 533
BseRI	GAGGAG	2 cut(s)	38, 730
BseXI	GCAGC	1 cut(s)	457
BshFI	GGCC	2 cut(s)	605, 691
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	705
BslFI	GGGAC	2 cut(s)	128, 248
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	2 cut(s)	308, 481
BsmFI	GGGAC	2 cut(s)	128, 248
BsnI	GGCC	2 cut(s)	605, 691
Bso31I	GGTCTC	1 cut(s)	481
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	34, 268, 481, 719
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	2 cut(s)	605, 691
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	70, 264
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	481
BsrBI	CCGCTC	1 cut(s)	74
BsrI	ACTGG	6 cut(s)	243, 264, 312, 439, 463, 533
BssECI	CCNNGG	2 cut(s)	606, 705
BssMI	GATC	4 cut(s)	34, 268, 481, 719
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	492, 734
Bst4CI	ACNGT	4 cut(s)	298, 333, 522, 682
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	51, 689
BstDEI	CTNAG	2 cut(s)	312, 422
BstKTI	GATC	4 cut(s)	37, 271, 484, 722
BstMAI	GTCTC	2 cut(s)	308, 481
BstMBI	GATC	4 cut(s)	34, 268, 481, 719
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 289
BstNI	CCWGG	2 cut(s)	492, 734
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	3 cut(s)	490, 704, 732
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	457
BstX2I	RGATCY	2 cut(s)	481, 719
BstYI	RGATCY	2 cut(s)	481, 719
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	605, 691
BtsIMutI	CAGTG	2 cut(s)	305, 518
Cac8I	GCNNGC	2 cut(s)	51, 689
Cfr13I	GGNCC	4 cut(s)	80, 262, 436, 460
Csp6I	GTAC	3 cut(s)	184, 326, 371
CviAII	CATG	4 cut(s)	212, 219, 406, 712
CviQI	GTAC	3 cut(s)	184, 326, 371
DdeI	CTNAG	2 cut(s)	312, 422
DpnI	GATC	4 cut(s)	36, 270, 483, 721
DpnII	GATC	4 cut(s)	34, 268, 481, 719
DraIII	CACNNNGTG	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	603
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	4 cut(s)	80, 262, 436, 460
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	140, 618
Eco88I	CYCGRG	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	490, 732
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	4 cut(s)	215, 222, 409, 715
FaiI	YATR	9 cut(s)	213, 220, 347, 407, 411, 419, 509, 593, 713
FaqI	GGGAC	2 cut(s)	128, 248
FatI	CATG	4 cut(s)	211, 218, 405, 711
FbaI	TGATCA	2 cut(s)	34, 268
Fnu4HI	GCNGC	1 cut(s)	471
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	605, 691
HapII	CCGG	1 cut(s)	705
Hin1II	CATG	4 cut(s)	215, 222, 409, 715
HinfI	GANTC	1 cut(s)	511
HpaII	CCGG	1 cut(s)	705
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	184, 254
Hpy188I	TCNGA	3 cut(s)	130, 486, 729
Hpy188III	TCNNGA	2 cut(s)	566, 667
Hpy8I	GTNNAC	2 cut(s)	184, 254
Hpy99I	CGWCG	2 cut(s)	92, 252
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	4 cut(s)	298, 333, 522, 682
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	209, 349, 405, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 289
HpyF3I	CTNAG	2 cut(s)	312, 422
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	215, 222, 409, 715
Ksp22I	TGATCA	2 cut(s)	34, 268
Kzo9I	GATC	4 cut(s)	34, 268, 481, 719
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	4 cut(s)	36, 270, 483, 721
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	4 cut(s)	34, 268, 481, 719
MboII	GAAGA	3 cut(s)	146, 542, 653
MflI	RGATCY	2 cut(s)	481, 719
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	605
MluCI	AATT	3 cut(s)	132, 175, 561
MluNI	TGGCCA	1 cut(s)	605
MmeI	TCCRAC	2 cut(s)	513, 607
Mox20I	TGGCCA	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	605
MseI	TTAA	2 cut(s)	278, 396
MslI	CAYNNNNRTG	1 cut(s)	410
Msp20I	TGGCCA	1 cut(s)	605
MspI	CCGG	1 cut(s)	705
MspR9I	CCNGG	3 cut(s)	492, 706, 734
MvaI	CCWGG	2 cut(s)	492, 734
MwoI	GCNNNNNNNGC	2 cut(s)	119, 289
NciI	CCSGG	1 cut(s)	706
NdeII	GATC	4 cut(s)	34, 268, 481, 719
NlaIII	CATG	4 cut(s)	215, 222, 409, 715
NlaIV	GGNNCC	2 cut(s)	70, 264
NmuCI	GTSAC	1 cut(s)	97
NspI	RCATGY	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	472
Ppu21I	YACGTR	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	490, 732
PspGI	CCWGG	2 cut(s)	490, 732
PspN4I	GGNNCC	2 cut(s)	70, 264
PspPI	GGNCC	4 cut(s)	80, 262, 436, 460
PspXI	VCTCGAGB	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	481, 719
RsaI	GTAC	3 cut(s)	185, 327, 372
RsaNI	GTAC	3 cut(s)	184, 326, 371
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	278, 396
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	4 cut(s)	34, 268, 481, 719
Sau96I	GGNCC	4 cut(s)	80, 262, 436, 460
ScrFI	CCNGG	3 cut(s)	492, 706, 734
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	471
Sfr274I	CTCGAG	1 cut(s)	380
SinI	GGWCC	4 cut(s)	80, 262, 436, 460
SlaI	CTCGAG	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	2 cut(s)	380, 541
SmoI	CTYRAG	2 cut(s)	380, 541
Sse9I	AATT	3 cut(s)	132, 175, 561
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	3 cut(s)	490, 704, 732
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	4 cut(s)	298, 333, 522, 682
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	189, 199, 381, 656
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	3 cut(s)	132, 175, 561
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	2 cut(s)	278, 396
Tru9I	TTAA	2 cut(s)	278, 396
TscAI	CASTG	2 cut(s)	312, 525
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	590
TspRI	CASTG	2 cut(s)	312, 525
VpaK11BI	GGWCC	4 cut(s)	80, 262, 436, 460
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	380
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.