Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

28412742 .. 28414048

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1237200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTATGCAGGCATAGTCAAGGGGAAGTTGGATCATTTGAGAAGATCTTTCGAGGTTCAGTTTGCAGCTGGGAGGGATTTGAGACCTGGACAACTAGGAAATCTGATACAGACTTTAGATGATTGGCTAGACACTACGAACAATGCGCTTCTGACAATTGAAGAGAAGATCAAATGGGCAGATAAAAAGTGTGAGTTAGATGCAATACACAAAAAGGCAGTCAAGGACAGGGTGGAAGAAGTAAAGAAGTCTGTCAATAACAAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

90

Amino Acids

10.16

Weight (kDa)

9.1

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspLEI	GCGC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	95, 128
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	77
BseYI	CCCAGC	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	76
Bsp143I	GATC	3 cut(s)	31, 44, 168
BspPI	GGATC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	76
BssMI	GATC	3 cut(s)	31, 44, 168
Bst2UI	CCWGG	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	3 cut(s)	34, 47, 171
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	3 cut(s)	31, 44, 168
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	148
CviJI	RGCY	2 cut(s)	68, 127
CviKI_1	RGCY	2 cut(s)	68, 127
DpnI	GATC	3 cut(s)	33, 46, 170
DpnII	GATC	3 cut(s)	31, 44, 168
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	85
FaiI	YATR	3 cut(s)	6, 14, 268
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	2 cut(s)	95, 128
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	66
GsaI	CCCAGC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	105, 153
HpyCH4V	TGCA	3 cut(s)	8, 65, 203
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	31, 44, 168
LpnPI	CCDG	4 cut(s)	54, 72, 99, 214
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	95, 128
MalI	GATC	3 cut(s)	33, 46, 170
MboI	GATC	3 cut(s)	31, 44, 168
MboII	GAAGA	4 cut(s)	54, 173, 178, 248
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	2 cut(s)	46, 66
MspA1I	CMGCKG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	31, 44, 168
PkrI	GCNGC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	68
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	3 cut(s)	31, 44, 168
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	3 cut(s)	57, 70, 88
SfaNI	GCATC	1 cut(s)	190
Sse9I	AATT	1 cut(s)	156
SspMI	CTAG	2 cut(s)	95, 128
StyD4I	CCNGG	1 cut(s)	85
TaqI	TCGA	1 cut(s)	51
TasI	AATT	1 cut(s)	156
TseI	GCWGC	1 cut(s)	65
XspI	CTAG	2 cut(s)	95, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.