Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

12055927 .. 12057623

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1106400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCACAAGGGTATTTTTTGTGTGAATCTTTTCCTTAAAAATGGGGGTCGTCCATTGGTACTTTTAAATTATAACACACTTCTGACTCTCTTATGTAGATTACTTTTGCACATATACGTGAGATGTCTGATTGTAACTTTATATGTTTTCTCTTGGGGCATAATAAGAGGAAAGCTGGACCAGTTGCGAAAATGCTTTGAGGTCCAGTTTTCTGCAGGGAGAGATCCAAGACCTGGACAACTTGGGAGTATGATTCAAACACTGTCAAACTGGTTGGATACCTCAAGCAATCTTCTTATCTCAATTCAAGAAAAGATGAAGTGGGCTGATACTATGACTGAAGTGGCCAAGGAACACAAGAAAGAAGTTGGAAATAGGGTGGAAGAAGTAAAGAAGTCGATTTCCATCAGGGTCAAAGTTCCCCACTGTAAGCAGGCCGACATTGACTTCCGGGGGCATGAGGAGATCTACTCCGAACCTGGAGGAGTGATGGACTATGAGGAAGACCGTAGTCGACCAAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

176

Amino Acids

20.24

Weight (kDa)

9.24

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	514
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	257, 308
AjnI	CCWGG	2 cut(s)	232, 478
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	345, 435
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	178, 202
AsuC2I	CCSGG	1 cut(s)	452
AvaII	GGWCC	2 cut(s)	178, 202
BalI	TGGCCA	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	510
BccI	CCATC	2 cut(s)	413, 484
BciT130I	CCWGG	2 cut(s)	234, 480
BciVI	GTATCC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	213
BfuI	GTATCC	1 cut(s)	271
BglII	AGATCT	1 cut(s)	465
Bme1390I	CCNGG	3 cut(s)	234, 452, 480
Bme18I	GGWCC	2 cut(s)	178, 202
BmgT120I	GGNCC	2 cut(s)	178, 202
BmrFI	CCNGG	3 cut(s)	234, 452, 480
BoxI	GACNNNNGTC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	510
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	268
BpuMI	CCSGG	1 cut(s)	452
BsaAI	YACGTR	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	348, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	3 cut(s)	181, 205, 275
Bse8I	GATNNNNATC	1 cut(s)	404
BseBI	CCWGG	2 cut(s)	234, 480
BseDI	CCNNGG	2 cut(s)	348, 451
BseJI	GATNNNNATC	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseNI	ACTGG	3 cut(s)	181, 205, 275
BseRI	GAGGAG	2 cut(s)	476, 498
BshFI	GGCC	2 cut(s)	347, 437
BsiSI	CCGG	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	233
BsnI	GGCC	2 cut(s)	347, 437
Bsp143I	GATC	2 cut(s)	223, 465
BspANI	GGCC	2 cut(s)	347, 437
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	1 cut(s)	218
BsrI	ACTGG	3 cut(s)	181, 205, 275
BssECI	CCNNGG	2 cut(s)	348, 451
BssMI	GATC	2 cut(s)	223, 465
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	234, 480
Bst4CI	ACNGT	3 cut(s)	264, 428, 509
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	435
BstKTI	GATC	2 cut(s)	226, 468
BstMBI	GATC	2 cut(s)	223, 465
BstNI	CCWGG	2 cut(s)	234, 480
BstPAI	GACNNNNGTC	1 cut(s)	510
BstSCI	CCNGG	3 cut(s)	232, 450, 478
BstSFI	CTRYAG	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	2 cut(s)	223, 465
BstYI	RGATCY	2 cut(s)	223, 465
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	347, 437
BtsIMutI	CAGTG	2 cut(s)	260, 424
Cac8I	GCNNGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	178, 202
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	1 cut(s)	458
CviJI	RGCY	4 cut(s)	175, 326, 347, 437
CviKI_1	RGCY	4 cut(s)	175, 326, 347, 437
CviQI	GTAC	1 cut(s)	59
DpnI	GATC	2 cut(s)	225, 467
DpnII	GATC	2 cut(s)	223, 465
DraI	TTTAAA	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	178, 202
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	2 cut(s)	232, 478
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	1 cut(s)	461
FatI	CATG	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	514
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	2 cut(s)	347, 437
HapII	CCGG	1 cut(s)	451
Hin1II	CATG	1 cut(s)	461
HincII	GTYRAC	1 cut(s)	515
HindII	GTYRAC	1 cut(s)	515
HinfI	GANTC	3 cut(s)	25, 85, 253
HpaII	CCGG	1 cut(s)	451
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	3 cut(s)	84, 129, 475
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	515
HpyCH4III	ACNGT	3 cut(s)	264, 428, 509
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	4, 109, 215
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	461
Kzo9I	GATC	2 cut(s)	223, 465
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	225, 467
MboI	GATC	2 cut(s)	223, 465
MboII	GAAGA	3 cut(s)	284, 395, 515
MflI	RGATCY	2 cut(s)	223, 465
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	2 cut(s)	67, 303
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	2 cut(s)	255, 349
MnlI	CCTC	7 cut(s)	161, 193, 292, 454, 476, 493, 516
Mox20I	TGGCCA	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	2 cut(s)	36, 65
MslI	CAYNNNNRTG	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	347
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	3 cut(s)	234, 452, 480
MvaI	CCWGG	2 cut(s)	234, 480
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	2 cut(s)	223, 465
NlaIII	CATG	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	25, 253
PflMI	CCANNNNNTGG	1 cut(s)	233
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	510
PsiI	TTATAA	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	232, 478
PspGI	CCWGG	2 cut(s)	232, 478
PspPI	GGNCC	2 cut(s)	178, 202
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	223, 465
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	36, 65
Sau3AI	GATC	2 cut(s)	223, 465
Sau96I	GGNCC	2 cut(s)	178, 202
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	234, 452, 480
SetI	ASST	7 cut(s)	120, 177, 204, 235, 284, 481, 527
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	2 cut(s)	178, 202
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	2 cut(s)	67, 303
StyD4I	CCNGG	3 cut(s)	232, 450, 478
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	264, 428, 509
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	398, 514
TasI	AATT	2 cut(s)	67, 303
TfiI	GAWTC	2 cut(s)	25, 253
Tru1I	TTAA	2 cut(s)	36, 65
Tru9I	TTAA	2 cut(s)	36, 65
TscAI	CASTG	2 cut(s)	267, 431
TspDTI	ATGAA	1 cut(s)	332
TspRI	CASTG	2 cut(s)	267, 431
Van91I	CCANNNNNTGG	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	178, 202
XmiI	GTMKAC	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.