Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

9526488 .. 9531999

Gene Structure 5512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGACATGGAGCAAAAGCAAGAGGAGCTCATCGATCACTTCGTCAAGCAAGCCTCGTCTCTCACCGGCGCCTCCCTCGCCTCCCTCGTCTCCGAGGCAACCTCCCACCCTTCCCTCTTCGCCTTCTCCGAGATTCTCTCCGCCCCTTCCCTTCTCCAGCTTGAAGGAACAGAGAATTCTGTGTACCTCGATGTGCTTCGTCTGTTTGCGCACGGCACATGGAGTGATTACAAGAGTAATGCCGGTCGTCTTCCACAATTGGTCCCTGATCAAGCACTGAAGCTAAAGCAGTTAACTGTGCTTACACTTGCAGAGACAAACAAGGTACTACCATATGATCAGCTAATGCAACAGTTAGATGTTGCAAATGTACGTGAACTTGAGGATTTTCTCATTAATGAGTGCATGTATGCGGGCATAGTAAGGGGAAAGTTGGACCAGTTAAGAAAATGCTTTGAGGTCCAATTTGCTGCAGGGAGAGATCCGAGACCTGAACAACTTGGGAGTATGATCGAGACACTATCAAATTGGTTGGTTACGTCAGATAACCTTCTTATCTCAATTCAAGAGAAGATGAGCTGGGCTGATAAAATGTCTGAACTGAACAAGAAGCATAAAAAGGAAATTGAAGACAAGGCTGAAGAAGTAAAGAAAACATATTCTTTGAAGGCCGACAATGACTTCCGGGGGCATGAGGAGATATACTCCGAACCTGGTGGAGTGATGGACTATGAGGAAGACCGAAGTCGACCAAAGAGGAGACGTCATCCGATATATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

261

Amino Acids

29.75

Weight (kDa)

5.3

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN7_HB_subdom	PF22061	13 - 43	5.1e-08	CSN7 helical bundle subdomain
PCI	PF01399	84 - 155	6.5e-07	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	766
Acc16I	TGCGCA	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	748
AciI	CCGC	2 cut(s)	141, 413
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	299, 660
AcyI	GRCGYC	2 cut(s)	69, 763
AfaI	GTAC	3 cut(s)	185, 327, 372
AgsI	TTSAA	4 cut(s)	164, 566, 629, 667
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	5 cut(s)	28, 160, 283, 343, 579
AluI	AGCT	5 cut(s)	28, 160, 283, 343, 579
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	6 cut(s)	63, 94, 308, 481, 509, 754
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	1 cut(s)	669
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	175
AseI	ATTAAT	1 cut(s)	396
AspLEI	GCGC	2 cut(s)	71, 211
AspS9I	GGNCC	3 cut(s)	262, 436, 460
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	3 cut(s)	262, 436, 460
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	30
BbsI	GAAGAC	3 cut(s)	242, 636, 744
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	718
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	714
BclI	TGATCA	2 cut(s)	268, 337
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	6 cut(s)	63, 94, 308, 481, 509, 754
BfmI	CTRYAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	2 cut(s)	686, 714
Bme18I	GGWCC	3 cut(s)	262, 436, 460
BmgT120I	GGNCC	3 cut(s)	262, 436, 460
BmiI	GGNNCC	2 cut(s)	70, 264
BmrFI	CCNGG	2 cut(s)	686, 714
BoxI	GACNNNNGTC	1 cut(s)	744
BpiI	GAAGAC	3 cut(s)	242, 636, 744
BplI	GAGNNNNNCTC	6 cut(s)	86, 118, 122, 154, 689, 721
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	686
Bsa29I	ATCGAT	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	374
BsaHI	GRCGYC	2 cut(s)	69, 763
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	93, 685
Bse118I	RCCGGY	2 cut(s)	65, 242
Bse1I	ACTGG	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	714
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	93, 685
BseGI	GGATG	1 cut(s)	766
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	3 cut(s)	38, 710, 772
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	579
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	671
BshNI	GGYRCC	1 cut(s)	68
BshVI	ATCGAT	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	3 cut(s)	66, 243, 685
BslFI	GGGAC	1 cut(s)	248
BsmAI	GTCTC	6 cut(s)	63, 94, 308, 481, 509, 754
BsmBI	CGTCTC	3 cut(s)	63, 94, 754
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	671
Bso31I	GGTCTC	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	5 cut(s)	34, 268, 337, 481, 510
BspACI	CCGC	2 cut(s)	141, 413
BspANI	GGCC	1 cut(s)	671
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	70, 264
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	481
BsrFI	RCCGGY	2 cut(s)	65, 242
BsrI	ACTGG	1 cut(s)	439
BssAI	RCCGGY	2 cut(s)	65, 242
BssECI	CCNNGG	2 cut(s)	93, 685
BssMI	GATC	5 cut(s)	34, 268, 337, 481, 510
BssNI	GRCGYC	2 cut(s)	69, 763
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	2 cut(s)	298, 354
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	2 cut(s)	69, 763
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	51, 415
BstF5I	GGATG	1 cut(s)	766
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	2 cut(s)	71, 211
BstKTI	GATC	5 cut(s)	37, 271, 340, 484, 513
BstMAI	GTCTC	6 cut(s)	63, 94, 308, 481, 509, 754
BstMBI	GATC	5 cut(s)	34, 268, 337, 481, 510
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 77
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	744
BstSCI	CCNGG	2 cut(s)	684, 712
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	3 cut(s)	242, 636, 744
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	671
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	766
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	51, 415
CfoI	GCGC	2 cut(s)	71, 211
Cfr10I	RCCGGY	2 cut(s)	65, 242
Cfr13I	GGNCC	3 cut(s)	262, 436, 460
ClaI	ATCGAT	1 cut(s)	33
CsiI	ACCWGGT	1 cut(s)	712
Csp6I	GTAC	3 cut(s)	184, 326, 371
CviAII	CATG	4 cut(s)	7, 219, 406, 692
CviJI	RGCY	9 cut(s)	28, 53, 160, 283, 343, 579, 584, 638, 671
CviKI_1	RGCY	9 cut(s)	28, 53, 160, 283, 343, 579, 584, 638, 671
CviQI	GTAC	3 cut(s)	184, 326, 371
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	5 cut(s)	36, 270, 339, 483, 512
DpnII	GATC	5 cut(s)	34, 268, 337, 481, 510
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	3 cut(s)	262, 436, 460
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	2 cut(s)	299, 660
EcoICRI	GAGCTC	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	30
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
Esp3I	CGTCTC	3 cut(s)	63, 94, 754
FaeI	CATG	4 cut(s)	10, 222, 409, 695
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	4 cut(s)	6, 218, 405, 691
FauI	CCCGC	1 cut(s)	406
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	2 cut(s)	268, 337
FblI	GTMKAC	1 cut(s)	748
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	1 cut(s)	753
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	471
FspI	TGCGCA	1 cut(s)	210
GlaI	GCGC	2 cut(s)	70, 210
GluI	GCNGC	1 cut(s)	471
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	671
HapII	CCGG	3 cut(s)	66, 243, 685
HhaI	GCGC	2 cut(s)	71, 211
Hin1I	GRCGYC	2 cut(s)	69, 763
Hin1II	CATG	4 cut(s)	10, 222, 409, 695
Hin6I	GCGC	2 cut(s)	69, 209
HinP1I	GCGC	2 cut(s)	69, 209
HincII	GTYRAC	2 cut(s)	294, 749
HindII	GTYRAC	2 cut(s)	294, 749
HinfI	GANTC	1 cut(s)	133
HpaI	GTTAAC	1 cut(s)	294
HpaII	CCGG	3 cut(s)	66, 243, 685
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	4 cut(s)	184, 294, 377, 749
Hpy188I	TCNGA	7 cut(s)	94, 130, 486, 544, 598, 709, 771
Hpy188III	TCNNGA	2 cut(s)	514, 566
Hpy8I	GTNNAC	4 cut(s)	184, 294, 377, 749
HpyAV	CCTTC	7 cut(s)	120, 133, 156, 158, 161, 560, 661
HpyCH4III	ACNGT	2 cut(s)	298, 354
HpyCH4IV	ACGT	3 cut(s)	373, 539, 763
HpyCH4V	TGCA	5 cut(s)	311, 349, 365, 405, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 77
HpySE526I	ACGT	3 cut(s)	373, 539, 763
Hsp92I	GRCGYC	2 cut(s)	69, 763
Hsp92II	CATG	4 cut(s)	10, 222, 409, 695
HspAI	GCGC	2 cut(s)	69, 209
KasI	GGCGCC	1 cut(s)	68
Ksp22I	TGATCA	2 cut(s)	268, 337
KspAI	GTTAAC	1 cut(s)	294
Kzo9I	GATC	5 cut(s)	34, 268, 337, 481, 510
LmnI	GCTCC	2 cut(s)	10, 25
Lsp1109I	GCAGC	1 cut(s)	457
MabI	ACCWGGT	1 cut(s)	712
MaeII	ACGT	3 cut(s)	373, 539, 763
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	5 cut(s)	36, 270, 339, 483, 512
MboI	GATC	5 cut(s)	34, 268, 337, 481, 510
MboII	GAAGA	6 cut(s)	109, 242, 583, 641, 653, 749
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	6 cut(s)	175, 257, 464, 526, 561, 624
Mly113I	GGCGCC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	414
MseI	TTAA	3 cut(s)	293, 396, 443
MspI	CCGG	3 cut(s)	66, 243, 685
MspR9I	CCNGG	2 cut(s)	686, 714
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	25, 77
NarI	GGCGCC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	686
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	5 cut(s)	34, 268, 337, 481, 510
NlaIII	CATG	4 cut(s)	10, 222, 409, 695
NlaIV	GGNNCC	2 cut(s)	70, 264
NsbI	TGCGCA	1 cut(s)	210
NspI	RCATGY	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 84, 126
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	472
PluTI	GGCGCC	1 cut(s)	72
Ppu21I	YACGTR	1 cut(s)	374
PshAI	GACNNNNGTC	1 cut(s)	744
PshBI	ATTAAT	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	712
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	2 cut(s)	70, 264
PspPI	GGNCC	3 cut(s)	262, 436, 460
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	3 cut(s)	185, 327, 372
RsaNI	GTAC	3 cut(s)	184, 326, 371
SacI	GAGCTC	1 cut(s)	30
SalI	GTCGAC	1 cut(s)	747
SaqAI	TTAA	3 cut(s)	293, 396, 443
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	5 cut(s)	34, 268, 337, 481, 510
Sau96I	GGNCC	3 cut(s)	262, 436, 460
ScrFI	CCNGG	2 cut(s)	686, 714
SduI	GDGCHC	1 cut(s)	30
SexAI	ACCWGGT	1 cut(s)	712
SfcI	CTRYAG	1 cut(s)	471
SfoI	GGCGCC	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	65
SinI	GGWCC	3 cut(s)	262, 436, 460
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	6 cut(s)	175, 257, 464, 526, 561, 624
SsiI	CCGC	2 cut(s)	141, 413
SspDI	GGCGCC	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	684, 712
TaaI	ACNGT	2 cut(s)	298, 354
TaiI	ACGT	3 cut(s)	376, 542, 766
TaqI	TCGA	4 cut(s)	33, 189, 513, 748
TaqII	GACCGA	1 cut(s)	756
TasI	AATT	6 cut(s)	175, 257, 464, 526, 561, 624
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	3 cut(s)	293, 396, 443
Tru9I	TTAA	3 cut(s)	293, 396, 443
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	1 cut(s)	470
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	3 cut(s)	262, 436, 460
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	748
ZraI	GACGTC	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.