Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Forward (+)

26963112 .. 26967078

Gene Structure 3967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028719

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGATGTGCTGGAAGGAACAGAGAATGCTGTGTACCTGGATGTGCTTCGTCTGTTTGCACACGGCACATGGAGTGATTACAAGAGTAATGCCGGTCGTCTTCCACAGTTGGTCCCTGATCAAGCACTAAAACTAAGGCAGTTAACTGTTCTTACACTGGCTGAGACAAACAAGATACTACCATATGATCAGCTAATGCAGGAGTTAGATGTTGCAAATGTACGTGAACTCGAAGATTTTCTCATTAATGAGTGCATGTATGCGGGCATAGTAAGAGGAAAGTTGGACCAGTTAAGAAAATGCTTTGAGGTCCAATTTGCTGCAGGGAGAGATCCGAGACCTGAGCAACTTGGGAGTATGATCCAAACACTATCAAACTGGTTGGTTACGTCAGACAACCTTCTTATCTCAATTCAAGAGAAGATGAGCTGGGCAGATAAAATGACTGAACTGAACAAGCAGCACAAAAAGGAAATTGAAGACAAGGTGGAAGATGTAAAGAGAGCATATTCAATGAAGGCCGACAGTGACTTCCGGGGGCATGAGGAGATCTACTCCGAACCTGGTGGAGTGATGGACTATGAGGAAGACCGAAGTCGACCAAAGAGGAGACGGCATCCGATATATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

211

Amino Acids

24.44

Weight (kDa)

5.37

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	34 - 105	4e-07	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	598
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	2 cut(s)	326, 355
AfaI	GTAC	2 cut(s)	35, 222
AgsI	TTSAA	3 cut(s)	416, 479, 513
AjnI	CCWGG	2 cut(s)	36, 562
AluBI	AGCT	2 cut(s)	193, 429
AluI	AGCT	2 cut(s)	193, 429
Alw26I	GTCTC	3 cut(s)	158, 331, 604
AlwI	GGATC	2 cut(s)	326, 355
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	2 cut(s)	320, 460
AseI	ATTAAT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	237
AspS9I	GGNCC	3 cut(s)	112, 286, 310
AsuC2I	CCSGG	1 cut(s)	536
AvaII	GGWCC	3 cut(s)	112, 286, 310
BbsI	GAAGAC	3 cut(s)	92, 486, 594
BbvI	GCAGC	2 cut(s)	307, 472
BccI	CCATC	1 cut(s)	568
BceAI	ACGGC	2 cut(s)	79, 629
BciT130I	CCWGG	2 cut(s)	38, 564
BclI	TGATCA	2 cut(s)	118, 187
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	3 cut(s)	158, 331, 604
BfmI	CTRYAG	1 cut(s)	321
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	2 cut(s)	321, 461
BlsI	GCNGC	2 cut(s)	322, 462
Bme1390I	CCNGG	3 cut(s)	38, 536, 564
Bme18I	GGWCC	3 cut(s)	112, 286, 310
BmgT120I	GGNCC	3 cut(s)	112, 286, 310
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	3 cut(s)	38, 536, 564
BmsI	GCATC	1 cut(s)	625
BoxI	GACNNNNGTC	1 cut(s)	594
BpiI	GAAGAC	3 cut(s)	92, 486, 594
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
Bpu10I	CCTNAGC	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	535
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	3 cut(s)	162, 289, 383
BseBI	CCWGG	2 cut(s)	38, 564
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	3 cut(s)	10, 46, 616
BseMII	CTCAG	2 cut(s)	153, 333
BseNI	ACTGG	3 cut(s)	162, 289, 383
BseRI	GAGGAG	2 cut(s)	560, 622
BseXI	GCAGC	2 cut(s)	307, 472
BseYI	CCCAGC	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	521
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	93, 535
BslFI	GGGAC	1 cut(s)	98
BsmAI	GTCTC	3 cut(s)	158, 331, 604
BsmBI	CGTCTC	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	521
Bso31I	GGTCTC	1 cut(s)	331
Bsp143I	GATC	5 cut(s)	118, 187, 331, 360, 549
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	2 cut(s)	154, 334
BspLI	GGNNCC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	2 cut(s)	326, 355
BspTNI	GGTCTC	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	162, 289, 383
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	5 cut(s)	118, 187, 331, 360, 549
Bst2UI	CCWGG	2 cut(s)	38, 564
Bst4CI	ACNGT	3 cut(s)	108, 148, 527
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	3 cut(s)	134, 162, 342
BstF5I	GGATG	3 cut(s)	10, 46, 616
BstKTI	GATC	5 cut(s)	121, 190, 334, 363, 552
BstMAI	GTCTC	3 cut(s)	158, 331, 604
BstMBI	GATC	5 cut(s)	118, 187, 331, 360, 549
BstMCI	CGRYCG	1 cut(s)	97
BstNI	CCWGG	2 cut(s)	38, 564
BstNSI	RCATGY	1 cut(s)	259
BstPAI	GACNNNNGTC	1 cut(s)	594
BstSCI	CCNGG	3 cut(s)	36, 534, 562
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	307, 472
BstV2I	GAAGAC	3 cut(s)	92, 486, 594
BstX2I	RGATCY	2 cut(s)	331, 549
BstYI	RGATCY	2 cut(s)	331, 549
BsuRI	GGCC	1 cut(s)	521
BtsCI	GGATG	3 cut(s)	10, 46, 616
BtsIMutI	CAGTG	2 cut(s)	155, 532
Cac8I	GCNNGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	112, 286, 310
CsiI	ACCWGGT	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	34, 221
CviAII	CATG	3 cut(s)	69, 256, 542
CviJI	RGCY	4 cut(s)	161, 193, 429, 521
CviKI_1	RGCY	4 cut(s)	161, 193, 429, 521
CviQI	GTAC	2 cut(s)	34, 221
DdeI	CTNAG	3 cut(s)	134, 162, 342
DpnI	GATC	5 cut(s)	120, 189, 333, 362, 551
DpnII	GATC	5 cut(s)	118, 187, 331, 360, 549
Eco31I	GGTCTC	1 cut(s)	331
Eco47I	GGWCC	3 cut(s)	112, 286, 310
EcoRII	CCWGG	2 cut(s)	36, 562
Esp3I	CGTCTC	1 cut(s)	604
FaeI	CATG	3 cut(s)	72, 259, 545
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	68, 255, 541
FauI	CCCGC	1 cut(s)	256
FauNDI	CATATG	1 cut(s)	184
FbaI	TGATCA	2 cut(s)	118, 187
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	2 cut(s)	321, 461
FokI	GGATG	3 cut(s)	17, 53, 603
Fsp4HI	GCNGC	2 cut(s)	321, 461
GluI	GCNGC	2 cut(s)	321, 461
GsaI	CCCAGC	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	2 cut(s)	93, 535
Hin1II	CATG	3 cut(s)	72, 259, 545
HincII	GTYRAC	2 cut(s)	144, 599
HindII	GTYRAC	2 cut(s)	144, 599
HpaI	GTTAAC	1 cut(s)	144
HpaII	CCGG	2 cut(s)	93, 535
Hpy166II	GTNNAC	4 cut(s)	34, 144, 227, 599
Hpy188I	TCNGA	4 cut(s)	336, 394, 559, 621
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	4 cut(s)	34, 144, 227, 599
HpyAV	CCTTC	3 cut(s)	8, 410, 511
HpyCH4III	ACNGT	3 cut(s)	108, 148, 527
HpyCH4IV	ACGT	2 cut(s)	223, 389
HpyCH4V	TGCA	5 cut(s)	59, 199, 215, 255, 323
HpyF3I	CTNAG	3 cut(s)	134, 162, 342
HpySE526I	ACGT	2 cut(s)	223, 389
Hsp92II	CATG	3 cut(s)	72, 259, 545
Ksp22I	TGATCA	2 cut(s)	118, 187
KspAI	GTTAAC	1 cut(s)	144
Kzo9I	GATC	5 cut(s)	118, 187, 331, 360, 549
Lsp1109I	GCAGC	2 cut(s)	307, 472
LweI	GCATC	1 cut(s)	625
MabI	ACCWGGT	1 cut(s)	562
MaeII	ACGT	2 cut(s)	223, 389
MaeIII	GTNAC	2 cut(s)	385, 527
MalI	GATC	5 cut(s)	120, 189, 333, 362, 551
MboI	GATC	5 cut(s)	118, 187, 331, 360, 549
MboII	GAAGA	6 cut(s)	92, 245, 433, 491, 503, 599
MflI	RGATCY	2 cut(s)	331, 549
MluCI	AATT	3 cut(s)	314, 411, 474
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	269, 301, 538, 577, 600
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	3 cut(s)	143, 246, 293
MspI	CCGG	2 cut(s)	93, 535
MspR9I	CCNGG	3 cut(s)	38, 536, 564
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	2 cut(s)	38, 564
NciI	CCSGG	1 cut(s)	536
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	5 cut(s)	118, 187, 331, 360, 549
NlaIII	CATG	3 cut(s)	72, 259, 545
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	527
NspI	RCATGY	1 cut(s)	259
PctI	GAATGC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	322, 462
Ppu21I	YACGTR	1 cut(s)	224
PshAI	GACNNNNGTC	1 cut(s)	594
PshBI	ATTAAT	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	36, 562
PspFI	CCCAGC	1 cut(s)	429
PspGI	CCWGG	2 cut(s)	36, 562
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	3 cut(s)	112, 286, 310
PstI	CTGCAG	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	331, 549
RsaI	GTAC	2 cut(s)	35, 222
RsaNI	GTAC	2 cut(s)	34, 221
SalI	GTCGAC	1 cut(s)	597
SaqAI	TTAA	3 cut(s)	143, 246, 293
SatI	GCNGC	2 cut(s)	321, 461
Sau3AI	GATC	5 cut(s)	118, 187, 331, 360, 549
Sau96I	GGNCC	3 cut(s)	112, 286, 310
ScrFI	CCNGG	3 cut(s)	38, 536, 564
SexAI	ACCWGGT	1 cut(s)	562
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	3 cut(s)	112, 286, 310
Sse9I	AATT	3 cut(s)	314, 411, 474
SsiI	CCGC	1 cut(s)	263
StyD4I	CCNGG	3 cut(s)	36, 534, 562
TaaI	ACNGT	3 cut(s)	108, 148, 527
TaiI	ACGT	2 cut(s)	226, 392
TaqI	TCGA	2 cut(s)	231, 598
TaqII	GACCGA	1 cut(s)	606
TasI	AATT	3 cut(s)	314, 411, 474
Tru1I	TTAA	3 cut(s)	143, 246, 293
Tru9I	TTAA	3 cut(s)	143, 246, 293
TscAI	CASTG	2 cut(s)	162, 532
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	2 cut(s)	320, 460
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	1 cut(s)	530
TspRI	CASTG	2 cut(s)	162, 532
VpaK11BI	GGWCC	3 cut(s)	112, 286, 310
VspI	ATTAAT	1 cut(s)	246
XceI	RCATGY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.