Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003918.1

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 677

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003918.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 235 bp

atggacatcgagcaaaagcaagaggagctgatcgatcacttcgtcaagcaagcctcctctctcaccggctccgccctctcctccgtcgtctccgacgccacctcccacccttccctcttcgccttctccgagattctcgccctccctaatcttcttcagcttgaaggaacagagaatgctgtgtacctggatgtgcttcgtctgtttgcacacggcacatggagtgattacaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

78

Amino Acids

8.62

Weight (kDa)

4.52

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	2 cut(s)	28, 160
AluI	AGCT	2 cut(s)	28, 160
Alw26I	GTCTC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bse118I	RCCGGY	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	33
BseGI	GGATG	1 cut(s)	196
BseRI	GAGGAG	3 cut(s)	38, 46, 70
BshVI	ATCGAT	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	30, 34
BspACI	CCGC	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	2 cut(s)	30, 34
BssNI	GRCGYC	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	33, 37
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	2 cut(s)	30, 34
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	33
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	65
ClaI	ATCGAT	1 cut(s)	33
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	4 cut(s)	28, 53, 69, 160
CviKI_1	RGCY	4 cut(s)	28, 53, 69, 160
CviQI	GTAC	1 cut(s)	184
DpnI	GATC	2 cut(s)	32, 36
DpnII	GATC	2 cut(s)	30, 34
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	222
FaiI	YATR	1 cut(s)	220
FatI	CATG	1 cut(s)	218
FokI	GGATG	1 cut(s)	203
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	222
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	94, 130
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	2 cut(s)	89, 98
HpyAV	CCTTC	3 cut(s)	120, 133, 158
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	30, 34
LmnI	GCTCC	2 cut(s)	25, 74
LpnPI	CCDG	3 cut(s)	79, 173, 200
MalI	GATC	2 cut(s)	32, 36
MboI	GATC	2 cut(s)	30, 34
MboII	GAAGA	3 cut(s)	109, 143, 146
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	8 cut(s)	16, 64, 67, 86, 91, 112, 125, 152
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	2 cut(s)	30, 34
NlaIII	CATG	1 cut(s)	222
NlaIV	GGNNCC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 126
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	70
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
Sau3AI	GATC	2 cut(s)	30, 34
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	4 cut(s)	30, 104, 162, 189
SsiI	CCGC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	186
TaqI	TCGA	2 cut(s)	9, 33
TfiI	GAWTC	1 cut(s)	133
TspGWI	ACGGA	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.