Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

12142759 .. 12147204

Gene Structure 4446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1107100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGATTGAGCAAAAGCAAGAGGAGGTCATTGATCACTTCGTGAAGCAAGCCTCATCACTCGATGGCTCTGCTCTCGGCCCCCTCGTTGCAGAAGTCACCTCCCACCCTGCCCTTTTTGCCTTTTCGGAAATTATCGCTGTCCCTAATGTTCTTCAGCTTGAAGGAACTGAAAATTCTGTGTACCTCCATGTGCTTCGATTGTTTGCACATGGCACATGGAGTGATTACAAGAGTGATGCCAGTCGTCTTCCACATTTGGTCCCTGATCAAGTCTTAAAGCTGAAACAGCTTACTGTTCTTACACTGGCTGAGACAAACAAGGTACTACCGTATCATCAACTTATGCAGGAGTTAGATGTTATCAATGTACAAGAGCTCGAGGATTTTCTCATTAATGAGTGCATGTATGCGGGCATAATAAGAGGAAAGCTGGACCAGCTGCAAAAATGCTTTGAGCTCCAGTTTGCTGCAGGGAGAGATCCGAGACCTGGACAACTTGGGAGTATGATTCAAACACTGTCAAACTGGTTGGATACCTCAAGCAATCTTCTTATCTCAATTCAAGAAAAGATGAAGTGGGCTGATACTATGACTGAAGTGGCCAAGGAACACAAGAAAGAAGTTGGAAATAGGGTGGAAGAAGTAAAGAAGTCGATTTCCATCAAGGCCGACGTTGACTTCCGGGGGCATGAGGAGATCTACTCCGAACCTGGAGGAGTGATGGACTATGAGGAAGACCGTAGTCGACCAAAGAGGAGACGGCATCCTATATATAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

262

Amino Acids

29.73

Weight (kDa)

5.43

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	82 - 154	3.2e-07	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	748
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	140, 618
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	3 cut(s)	185, 327, 372
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	3 cut(s)	164, 515, 566
AjnI	CCWGG	2 cut(s)	490, 712
AluBI	AGCT	7 cut(s)	160, 283, 292, 379, 433, 442, 460
AluI	AGCT	7 cut(s)	160, 283, 292, 379, 433, 442, 460
Alw21I	GWGCWC	2 cut(s)	381, 462
Alw26I	GTCTC	3 cut(s)	308, 481, 754
AlwI	GGATC	1 cut(s)	476
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	3 cut(s)	79, 603, 669
ApeKI	GCWGC	2 cut(s)	442, 470
ApoI	RAATTY	1 cut(s)	175
AseI	ATTAAT	1 cut(s)	396
AspS9I	GGNCC	3 cut(s)	80, 262, 436
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	262, 436
BaeI	ACNNNNGTAYC	4 cut(s)	317, 317, 350, 350
BalI	TGGCCA	1 cut(s)	605
BanII	GRGCYC	2 cut(s)	381, 462
BbsI	GAAGAC	2 cut(s)	242, 744
Bbv12I	GWGCWC	2 cut(s)	381, 462
BbvI	GCAGC	2 cut(s)	429, 457
BccI	CCATC	3 cut(s)	59, 671, 718
BceAI	ACGGC	1 cut(s)	779
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	2 cut(s)	492, 714
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	2 cut(s)	34, 268
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	3 cut(s)	308, 481, 754
BfmI	CTRYAG	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	529
BglII	AGATCT	1 cut(s)	699
BisI	GCNGC	2 cut(s)	443, 471
BlsI	GCNGC	2 cut(s)	444, 472
Bme1390I	CCNGG	3 cut(s)	492, 686, 714
Bme18I	GGWCC	2 cut(s)	262, 436
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	3 cut(s)	80, 262, 436
BmiI	GGNNCC	2 cut(s)	82, 264
BmrFI	CCNGG	3 cut(s)	492, 686, 714
BmsI	GCATC	2 cut(s)	229, 775
BoxI	GACNNNNGTC	1 cut(s)	744
BpiI	GAAGAC	2 cut(s)	242, 744
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
BpmI	CTGGAG	2 cut(s)	446, 735
BpuEI	CTTGAG	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	686
BsaBI	GATNNNNATC	1 cut(s)	662
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	606, 685
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	4 cut(s)	243, 312, 463, 533
Bse8I	GATNNNNATC	1 cut(s)	662
BseBI	CCWGG	2 cut(s)	492, 714
BseDI	CCNNGG	2 cut(s)	606, 685
BseGI	GGATG	1 cut(s)	766
BseJI	GATNNNNATC	1 cut(s)	662
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	4 cut(s)	243, 312, 463, 533
BseRI	GAGGAG	4 cut(s)	38, 710, 732, 772
BseXI	GCAGC	2 cut(s)	429, 457
BshFI	GGCC	3 cut(s)	81, 605, 671
BsiHKAI	GWGCWC	2 cut(s)	381, 462
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	685
BslFI	GGGAC	2 cut(s)	128, 248
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	3 cut(s)	308, 481, 754
BsmBI	CGTCTC	1 cut(s)	754
BsmFI	GGGAC	2 cut(s)	128, 248
BsnI	GGCC	3 cut(s)	81, 605, 671
Bso31I	GGTCTC	1 cut(s)	481
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	2 cut(s)	381, 462
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	4 cut(s)	34, 268, 481, 699
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	3 cut(s)	81, 605, 671
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	82, 264
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	481
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	4 cut(s)	243, 312, 463, 533
BssECI	CCNNGG	2 cut(s)	606, 685
BssMI	GATC	4 cut(s)	34, 268, 481, 699
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	492, 714
Bst4CI	ACNGT	4 cut(s)	298, 333, 522, 743
BstAUI	TGTACA	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	51, 415
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	766
BstKTI	GATC	4 cut(s)	37, 271, 484, 702
BstMAI	GTCTC	3 cut(s)	308, 481, 754
BstMBI	GATC	4 cut(s)	34, 268, 481, 699
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 289, 439
BstNI	CCWGG	2 cut(s)	492, 714
BstNSI	RCATGY	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	744
BstSCI	CCNGG	3 cut(s)	490, 684, 712
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	429, 457
BstV2I	GAAGAC	2 cut(s)	242, 744
BstX2I	RGATCY	2 cut(s)	481, 699
BstYI	RGATCY	2 cut(s)	481, 699
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	3 cut(s)	81, 605, 671
BtsCI	GGATG	1 cut(s)	766
BtsIMutI	CAGTG	2 cut(s)	305, 518
Cac8I	GCNNGC	2 cut(s)	51, 415
Cfr13I	GGNCC	3 cut(s)	80, 262, 436
Csp6I	GTAC	3 cut(s)	184, 326, 371
CviAII	CATG	5 cut(s)	191, 212, 219, 406, 692
CviQI	GTAC	3 cut(s)	184, 326, 371
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	4 cut(s)	36, 270, 483, 701
DpnII	GATC	4 cut(s)	34, 268, 481, 699
DraIII	CACNNNGTG	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	603
Ecl136II	GAGCTC	2 cut(s)	379, 460
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	2 cut(s)	381, 462
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	262, 436
Eco53kI	GAGCTC	2 cut(s)	379, 460
Eco57I	CTGAAG	2 cut(s)	140, 618
Eco88I	CYCGRG	1 cut(s)	380
EcoICRI	GAGCTC	2 cut(s)	379, 460
EcoRII	CCWGG	2 cut(s)	490, 712
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	2 cut(s)	381, 462
ErhI	CCWWGG	1 cut(s)	606
Esp3I	CGTCTC	1 cut(s)	754
FaeI	CATG	5 cut(s)	194, 215, 222, 409, 695
FaqI	GGGAC	2 cut(s)	128, 248
FatI	CATG	5 cut(s)	190, 211, 218, 405, 691
FauI	CCCGC	1 cut(s)	406
FbaI	TGATCA	2 cut(s)	34, 268
FblI	GTMKAC	1 cut(s)	748
Fnu4HI	GCNGC	2 cut(s)	443, 471
FokI	GGATG	1 cut(s)	753
FriOI	GRGCYC	2 cut(s)	381, 462
Fsp4HI	GCNGC	2 cut(s)	443, 471
GluI	GCNGC	2 cut(s)	443, 471
GsuI	CTGGAG	2 cut(s)	446, 735
HaeIII	GGCC	3 cut(s)	81, 605, 671
HapII	CCGG	1 cut(s)	685
Hin1II	CATG	5 cut(s)	194, 215, 222, 409, 695
HincII	GTYRAC	2 cut(s)	679, 749
HindII	GTYRAC	2 cut(s)	679, 749
HinfI	GANTC	1 cut(s)	511
HpaII	CCGG	1 cut(s)	685
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	3 cut(s)	184, 679, 749
Hpy188I	TCNGA	3 cut(s)	130, 486, 709
Hpy188III	TCNNGA	2 cut(s)	43, 566
Hpy8I	GTNNAC	3 cut(s)	184, 679, 749
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	4 cut(s)	298, 333, 522, 743
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	6 cut(s)	92, 209, 349, 405, 445, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 289, 439
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	675
Hsp92II	CATG	5 cut(s)	194, 215, 222, 409, 695
Ksp22I	TGATCA	2 cut(s)	34, 268
Kzo9I	GATC	4 cut(s)	34, 268, 481, 699
LmnI	GCTCC	1 cut(s)	465
Lsp1109I	GCAGC	2 cut(s)	429, 457
LweI	GCATC	2 cut(s)	229, 775
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	4 cut(s)	36, 270, 483, 701
MboI	GATC	4 cut(s)	34, 268, 481, 699
MboII	GAAGA	5 cut(s)	146, 242, 542, 653, 749
MflI	RGATCY	2 cut(s)	481, 699
MhlI	GDGCHC	2 cut(s)	381, 462
MlsI	TGGCCA	1 cut(s)	605
MluCI	AATT	3 cut(s)	132, 175, 561
MluNI	TGGCCA	1 cut(s)	605
MmeI	TCCRAC	2 cut(s)	513, 607
Mox20I	TGGCCA	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	605
MseI	TTAA	2 cut(s)	278, 396
Msp20I	TGGCCA	1 cut(s)	605
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	1 cut(s)	685
MspR9I	CCNGG	3 cut(s)	492, 686, 714
MvaI	CCWGG	2 cut(s)	492, 714
MwoI	GCNNNNNNNGC	3 cut(s)	119, 289, 439
NciI	CCSGG	1 cut(s)	686
NdeII	GATC	4 cut(s)	34, 268, 481, 699
NlaIII	CATG	5 cut(s)	194, 215, 222, 409, 695
NlaIV	GGNNCC	2 cut(s)	82, 264
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	97
NspI	RCATGY	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	2 cut(s)	444, 472
PshAI	GACNNNNGTC	1 cut(s)	744
PshBI	ATTAAT	1 cut(s)	396
Psp124BI	GAGCTC	2 cut(s)	381, 462
Psp6I	CCWGG	2 cut(s)	490, 712
PspGI	CCWGG	2 cut(s)	490, 712
PspN4I	GGNNCC	2 cut(s)	82, 264
PspPI	GGNCC	3 cut(s)	80, 262, 436
PspXI	VCTCGAGB	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	481, 699
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	3 cut(s)	185, 327, 372
RsaNI	GTAC	3 cut(s)	184, 326, 371
SacI	GAGCTC	2 cut(s)	381, 462
SalI	GTCGAC	1 cut(s)	747
SaqAI	TTAA	2 cut(s)	278, 396
SatI	GCNGC	2 cut(s)	443, 471
Sau3AI	GATC	4 cut(s)	34, 268, 481, 699
Sau96I	GGNCC	3 cut(s)	80, 262, 436
ScrFI	CCNGG	3 cut(s)	492, 686, 714
SduI	GDGCHC	2 cut(s)	381, 462
SfaNI	GCATC	2 cut(s)	229, 775
SfcI	CTRYAG	1 cut(s)	471
Sfr274I	CTCGAG	1 cut(s)	380
SinI	GGWCC	2 cut(s)	262, 436
SlaI	CTCGAG	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	380, 541
SmoI	CTYRAG	2 cut(s)	380, 541
Sse9I	AATT	3 cut(s)	132, 175, 561
SsiI	CCGC	1 cut(s)	413
SstI	GAGCTC	2 cut(s)	381, 462
StyD4I	CCNGG	3 cut(s)	490, 684, 712
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	4 cut(s)	298, 333, 522, 743
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	5 cut(s)	63, 199, 381, 656, 748
TasI	AATT	3 cut(s)	132, 175, 561
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	2 cut(s)	278, 396
Tru9I	TTAA	2 cut(s)	278, 396
TscAI	CASTG	2 cut(s)	312, 525
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	2 cut(s)	442, 470
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	590
TspRI	CASTG	2 cut(s)	312, 525
VpaK11BI	GGWCC	2 cut(s)	262, 436
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.