Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

19927918 .. 19934554

Gene Structure 6637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG215200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCAGCTTCAAGGAACCGAATATGCTGTATACATTGATATGCTTCGCCTCTTTGCTCATGGTACATGGAGCGATTATAAAAGTAATGCTAGCCTTCTTCCACCACTAGTCCCAGATCAAATCAACAAGCTGAAGCAACTTACTGTGCTGTCTCTAGCTGAGGCGAACAAGGTTCTATCCTATGATCAACTCCTTGAGCAACTTGATCTTTCAAATGTACGTGAACTTGAAGACTTTCTTATCAATGAATGCATGTATATGGGCATAATCAAAGGGAAGTTGGATCATTTGAAAAGATCTGTTGAGGTTCAGTTTGCAGCTGGGAGGGATCTGAAACCTGGACAGCTTGGGAATATAATAGAGACCTTAACGGATTGGTTAGCCACTACCGACAATGTACTTCTCACAATTGAGGAGAAGATCAAATGGGCAGATAAGAAGTGTGAGTTGAATGCAACACACCAAAAGGAAGTCAAGGACAGAGTAGAAGAAGTGAAGAAGTCTCTTAGTCACAACAGGTTGCCTCGTGAATATCGTGTTGAAGACTTTATGTTTGGTGAACCAGCTGGATTAATGGACTATGAAGAAGATCGAACCCGAATGAAGAGGAGAAGGTCGCCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

209

Amino Acids

24.36

Weight (kDa)

5.89

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	31 - 104	5.2e-08	PCI domain
CSN7a_helixI	PF18392	116 - 162	6.7e-06	COP9 signalosome complex subunit 7a helix I domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	30
AclWI	GGATC	2 cut(s)	291, 336
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	3 cut(s)	64, 219, 399
AgsI	TTSAA	6 cut(s)	11, 213, 230, 292, 451, 542
AhlI	ACTAGT	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	6 cut(s)	7, 130, 158, 320, 346, 566
AluI	AGCT	6 cut(s)	7, 130, 158, 320, 346, 566
Alw26I	GTCTC	3 cut(s)	156, 356, 507
AlwI	GGATC	2 cut(s)	291, 336
ApeKI	GCWGC	2 cut(s)	4, 317
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AseI	ATTAAT	1 cut(s)	572
Asp700I	GAANNNNTTC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	569
AsuNHI	GCTAGC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	525
BbsI	GAAGAC	2 cut(s)	237, 549
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	16, 329
BciT130I	CCWGG	1 cut(s)	339
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	3 cut(s)	156, 356, 507
BcuI	ACTAGT	1 cut(s)	106
BfaI	CTAG	3 cut(s)	90, 107, 155
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	2 cut(s)	5, 318
BlsI	GCNGC	2 cut(s)	6, 319
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	339
BmtI	GCTAGC	1 cut(s)	93
BpiI	GAAGAC	2 cut(s)	237, 549
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	150
BseRI	GAGGAG	2 cut(s)	428, 622
BseXI	GCAGC	2 cut(s)	16, 329
BseYI	CCCAGC	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	95
BsmAI	GTCTC	3 cut(s)	156, 356, 507
BsmFI	GGGAC	1 cut(s)	95
BsmI	GAATGC	2 cut(s)	254, 457
Bso31I	GGTCTC	1 cut(s)	356
Bsp143I	GATC	8 cut(s)	115, 184, 205, 283, 296, 328, 420, 589
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	16
BspOI	GCTAGC	1 cut(s)	93
BspPI	GGATC	2 cut(s)	291, 336
BspTNI	GGTCTC	1 cut(s)	356
BssMI	GATC	8 cut(s)	115, 184, 205, 283, 296, 328, 420, 589
BssNAI	GTATAC	1 cut(s)	31
BssSI	CACGAG	1 cut(s)	525
Bst1107I	GTATAC	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	599
BstBAI	YACGTR	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	159, 506
BstKTI	GATC	8 cut(s)	118, 187, 208, 286, 299, 331, 423, 592
BstMAI	GTCTC	3 cut(s)	156, 356, 507
BstMBI	GATC	8 cut(s)	115, 184, 205, 283, 296, 328, 420, 589
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	16, 329
BstV2I	GAAGAC	2 cut(s)	237, 549
BstX2I	RGATCY	2 cut(s)	296, 328
BstYI	RGATCY	2 cut(s)	296, 328
BstZ17I	GTATAC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	63, 218, 398
CviAII	CATG	3 cut(s)	59, 66, 253
CviJI	RGCY	8 cut(s)	7, 93, 130, 158, 320, 346, 383, 566
CviKI_1	RGCY	8 cut(s)	7, 93, 130, 158, 320, 346, 383, 566
CviQI	GTAC	3 cut(s)	63, 218, 398
DdeI	CTNAG	2 cut(s)	159, 506
DpnI	GATC	8 cut(s)	117, 186, 207, 285, 298, 330, 422, 591
DpnII	GATC	8 cut(s)	115, 184, 205, 283, 296, 328, 420, 589
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	254
FaeI	CATG	3 cut(s)	62, 69, 256
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	3 cut(s)	58, 65, 252
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	5, 318
Fsp4HI	GCNGC	2 cut(s)	5, 318
FspBI	CTAG	3 cut(s)	90, 107, 155
GluI	GCNGC	2 cut(s)	5, 318
GsaI	CCCAGC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	62, 69, 256
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	3 cut(s)	31, 224, 560
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	1 cut(s)	527
Hpy8I	GTNNAC	3 cut(s)	31, 224, 560
HpyAV	CCTTC	2 cut(s)	104, 606
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	4 cut(s)	4, 252, 317, 455
HpyF3I	CTNAG	2 cut(s)	159, 506
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	3 cut(s)	62, 69, 256
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	8 cut(s)	115, 184, 205, 283, 296, 328, 420, 589
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	126, 306, 324, 351, 502, 552, 576
Lsp1109I	GCAGC	2 cut(s)	16, 329
MaeI	CTAG	3 cut(s)	90, 107, 155
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	8 cut(s)	117, 186, 207, 285, 298, 330, 422, 591
MboI	GATC	8 cut(s)	115, 184, 205, 283, 296, 328, 420, 589
MboII	GAAGA	9 cut(s)	89, 242, 430, 500, 508, 554, 596, 599, 616
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	2 cut(s)	296, 328
MluCI	AATT	1 cut(s)	408
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	7 cut(s)	59, 154, 298, 318, 406, 534, 600
Mph1103I	ATGCAT	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	2 cut(s)	368, 572
MslI	CAYNNNNRTG	2 cut(s)	38, 257
MspA1I	CMGCKG	2 cut(s)	320, 566
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	2 cut(s)	254, 457
MvaI	CCWGG	1 cut(s)	339
NdeII	GATC	8 cut(s)	115, 184, 205, 283, 296, 328, 420, 589
NheI	GCTAGC	1 cut(s)	89
NlaIII	CATG	3 cut(s)	62, 69, 256
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	254
NspI	RCATGY	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	532
PctI	GAATGC	2 cut(s)	254, 457
PdmI	GAANNNNTTC	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	6, 319
Ppu21I	YACGTR	1 cut(s)	221
PshBI	ATTAAT	1 cut(s)	572
PsiI	TTATAA	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	16
PsuI	RGATCY	2 cut(s)	296, 328
PvuII	CAGCTG	2 cut(s)	320, 566
RsaI	GTAC	3 cut(s)	64, 219, 399
RsaNI	GTAC	3 cut(s)	63, 218, 398
RseI	CAYNNNNRTG	2 cut(s)	38, 257
SaqAI	TTAA	2 cut(s)	368, 572
SatI	GCNGC	2 cut(s)	5, 318
Sau3AI	GATC	8 cut(s)	115, 184, 205, 283, 296, 328, 420, 589
ScrFI	CCNGG	1 cut(s)	339
SmiMI	CAYNNNNRTG	2 cut(s)	38, 257
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	106
Sse9I	AATT	1 cut(s)	408
SspMI	CTAG	3 cut(s)	90, 107, 155
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	592
TasI	AATT	1 cut(s)	408
TatI	WGTACW	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	368, 572
Tru9I	TTAA	2 cut(s)	368, 572
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	2 cut(s)	4, 317
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	3 cut(s)	261, 597, 617
TspGWI	ACGGA	1 cut(s)	386
VspI	ATTAAT	1 cut(s)	572
XceI	RCATGY	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	90, 107, 155
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.