Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

38260831 .. 38265196

Gene Structure 4366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGACATCGAGCAAAAGCAAGAGGAGCTGATCGATCACTTCGTCAAGCAAGCCTCCTCTCTCACCGGCTCCGCCCTCTCCTCCGTCGTCGCCGACGCCACCTCCCACCCTTCCCTCTTCGCCTTCTCCGAGATTCTCGCCCTCCCTAATCTTCTTCAGCTTGAAGGAACAGAGAATGCTGTGTACCTGGATGTGCTTCGTCTGTTTGCTCACGGCACATGGAGTGATTACAAGAGTAATGCCGGTCGTCTTCCACAATTGGTCCCTGATCAAGCACTAAAGCTAAGGCAGTTAACTGTTCTTACACTGGCTGAGACAAACAAGATACTACCATATGATCAGCTAATGCAGGAGTTAGATGTTGCAAATGTACGTGAACTCGAAGATTTTCTCATTAATGAGTGCATGTATGCGGGCATAGTAAGAGGAAAGTTGGACCAGTTAAGAAAATGCTTTGAGGTCCAATTTGCTGCAGGGAGAGATCCGAGACCTGAGCAACTTGGGAGTATGATCCAAACACTATCAAACTGGTTGGTTACGTCAGACAACCTTCTTATCTCAATTCAAGAGAAGATGAGCTGGGCAGATAAAATGACTGAACTGAACAAGCAGCACAAAAAGGAAATTGAAGACAAGGTGGAAGATGTAAAGAGAGCATATTCTATGAAGGCCGACGGTGACTTCCGGGGGCATGAGGAGATCTACTCCGAACCTGGTGGAGTGATGGACTATGAGGAAGACCGAAGTCGACCAAAGAGGAGACGGCATCCGATATATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

260

Amino Acids

29.77

Weight (kDa)

5.19

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN7_HB_subdom	PF22061	13 - 43	9.9e-07	CSN7 helical bundle subdomain
PCI	PF01399	84 - 155	6.1e-07	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	748
AciI	CCGC	2 cut(s)	72, 413
AclWI	GGATC	2 cut(s)	476, 505
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	185, 372
AgsI	TTSAA	3 cut(s)	164, 566, 629
AjnI	CCWGG	2 cut(s)	186, 712
AluBI	AGCT	5 cut(s)	28, 160, 283, 343, 579
AluI	AGCT	5 cut(s)	28, 160, 283, 343, 579
Alw26I	GTCTC	3 cut(s)	308, 481, 754
AlwI	GGATC	2 cut(s)	476, 505
AoxI	GGCC	1 cut(s)	669
ApeKI	GCWGC	2 cut(s)	470, 610
AseI	ATTAAT	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	387
AspS9I	GGNCC	3 cut(s)	262, 436, 460
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	2 cut(s)	55, 689
AvaII	GGWCC	3 cut(s)	262, 436, 460
BbsI	GAAGAC	3 cut(s)	242, 636, 744
BbvI	GCAGC	2 cut(s)	457, 622
BccI	CCATC	1 cut(s)	718
BceAI	ACGGC	2 cut(s)	229, 779
BciT130I	CCWGG	2 cut(s)	188, 714
BclI	TGATCA	2 cut(s)	268, 337
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	3 cut(s)	308, 481, 754
BfmI	CTRYAG	1 cut(s)	471
BglII	AGATCT	1 cut(s)	699
BisI	GCNGC	2 cut(s)	471, 611
BlsI	GCNGC	2 cut(s)	472, 612
Bme1390I	CCNGG	3 cut(s)	188, 686, 714
Bme18I	GGWCC	3 cut(s)	262, 436, 460
BmgT120I	GGNCC	3 cut(s)	262, 436, 460
BmiI	GGNNCC	2 cut(s)	70, 264
BmrFI	CCNGG	3 cut(s)	188, 686, 714
BmsI	GCATC	1 cut(s)	775
BoxI	GACNNNNGTC	1 cut(s)	744
BpiI	GAAGAC	3 cut(s)	242, 636, 744
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
Bpu10I	CCTNAGC	2 cut(s)	284, 492
BpuMI	CCSGG	1 cut(s)	686
Bsa29I	ATCGAT	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	685
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bse118I	RCCGGY	2 cut(s)	65, 242
Bse1I	ACTGG	3 cut(s)	312, 439, 533
BseBI	CCWGG	2 cut(s)	188, 714
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	685
BseGI	GGATG	2 cut(s)	196, 766
BseMII	CTCAG	2 cut(s)	303, 483
BseNI	ACTGG	3 cut(s)	312, 439, 533
BseRI	GAGGAG	5 cut(s)	38, 46, 70, 710, 772
BseXI	GCAGC	2 cut(s)	457, 622
BseYI	CCCAGC	1 cut(s)	579
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	671
BshVI	ATCGAT	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	247
BsiSI	CCGG	3 cut(s)	66, 243, 685
BslFI	GGGAC	1 cut(s)	248
BsmAI	GTCTC	3 cut(s)	308, 481, 754
BsmBI	CGTCTC	1 cut(s)	754
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	671
Bso31I	GGTCTC	1 cut(s)	481
Bsp143I	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 699
BspACI	CCGC	2 cut(s)	72, 413
BspANI	GGCC	1 cut(s)	671
BspCNI	CTCAG	2 cut(s)	304, 484
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	70, 264
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	2 cut(s)	476, 505
BspTNI	GGTCTC	1 cut(s)	481
BsrFI	RCCGGY	2 cut(s)	65, 242
BsrI	ACTGG	3 cut(s)	312, 439, 533
BssAI	RCCGGY	2 cut(s)	65, 242
BssECI	CCNNGG	1 cut(s)	685
BssMI	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 699
BssNI	GRCGYC	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	188, 714
Bst4CI	ACNGT	2 cut(s)	298, 677
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	51, 415
BstDEI	CTNAG	3 cut(s)	284, 312, 492
BstF5I	GGATG	2 cut(s)	196, 766
BstKTI	GATC	7 cut(s)	33, 37, 271, 340, 484, 513, 702
BstMAI	GTCTC	3 cut(s)	308, 481, 754
BstMBI	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 699
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	188, 714
BstNSI	RCATGY	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	744
BstSCI	CCNGG	3 cut(s)	186, 684, 712
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	457, 622
BstV2I	GAAGAC	3 cut(s)	242, 636, 744
BstX2I	RGATCY	2 cut(s)	481, 699
BstYI	RGATCY	2 cut(s)	481, 699
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	671
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	196, 766
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	51, 415
Cfr10I	RCCGGY	2 cut(s)	65, 242
Cfr13I	GGNCC	3 cut(s)	262, 436, 460
ClaI	ATCGAT	1 cut(s)	33
CseI	GACGC	1 cut(s)	104
CsiI	ACCWGGT	1 cut(s)	712
Csp6I	GTAC	2 cut(s)	184, 371
CviAII	CATG	3 cut(s)	219, 406, 692
CviJI	RGCY	9 cut(s)	28, 53, 69, 160, 283, 311, 343, 579, 671
CviKI_1	RGCY	9 cut(s)	28, 53, 69, 160, 283, 311, 343, 579, 671
CviQI	GTAC	2 cut(s)	184, 371
DdeI	CTNAG	3 cut(s)	284, 312, 492
DpnI	GATC	7 cut(s)	32, 36, 270, 339, 483, 512, 701
DpnII	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 699
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	3 cut(s)	262, 436, 460
Eco57I	CTGAAG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	186, 712
Esp3I	CGTCTC	1 cut(s)	754
FaeI	CATG	3 cut(s)	222, 409, 695
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	218, 405, 691
FauI	CCCGC	1 cut(s)	406
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	2 cut(s)	268, 337
FblI	GTMKAC	1 cut(s)	748
Fnu4HI	GCNGC	2 cut(s)	471, 611
FokI	GGATG	2 cut(s)	203, 753
Fsp4HI	GCNGC	2 cut(s)	471, 611
GluI	GCNGC	2 cut(s)	471, 611
GsaI	CCCAGC	1 cut(s)	583
HaeIII	GGCC	1 cut(s)	671
HapII	CCGG	3 cut(s)	66, 243, 685
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	222, 409, 695
HincII	GTYRAC	2 cut(s)	294, 749
HindII	GTYRAC	2 cut(s)	294, 749
HinfI	GANTC	1 cut(s)	133
HpaI	GTTAAC	1 cut(s)	294
HpaII	CCGG	3 cut(s)	66, 243, 685
HphI	GGTGA	2 cut(s)	55, 689
Hpy166II	GTNNAC	4 cut(s)	184, 294, 377, 749
Hpy188I	TCNGA	5 cut(s)	130, 486, 544, 709, 771
Hpy188III	TCNNGA	1 cut(s)	566
Hpy8I	GTNNAC	4 cut(s)	184, 294, 377, 749
Hpy99I	CGWCG	4 cut(s)	89, 92, 98, 677
HpyAV	CCTTC	5 cut(s)	120, 133, 158, 560, 661
HpyCH4III	ACNGT	2 cut(s)	298, 677
HpyCH4IV	ACGT	2 cut(s)	373, 539
HpyCH4V	TGCA	4 cut(s)	349, 365, 405, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	3 cut(s)	284, 312, 492
HpySE526I	ACGT	2 cut(s)	373, 539
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	222, 409, 695
Ksp22I	TGATCA	2 cut(s)	268, 337
KspAI	GTTAAC	1 cut(s)	294
Kzo9I	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 699
LmnI	GCTCC	2 cut(s)	25, 74
Lsp1109I	GCAGC	2 cut(s)	457, 622
LweI	GCATC	1 cut(s)	775
MabI	ACCWGGT	1 cut(s)	712
MaeII	ACGT	2 cut(s)	373, 539
MaeIII	GTNAC	2 cut(s)	535, 677
MalI	GATC	7 cut(s)	32, 36, 270, 339, 483, 512, 701
MboI	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 699
MboII	GAAGA	9 cut(s)	109, 143, 146, 242, 395, 583, 641, 653, 749
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	2 cut(s)	481, 699
MluCI	AATT	4 cut(s)	257, 464, 561, 624
MmeI	TCCRAC	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	3 cut(s)	293, 396, 443
MspI	CCGG	3 cut(s)	66, 243, 685
MspR9I	CCNGG	3 cut(s)	188, 686, 714
MunI	CAATTG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	2 cut(s)	188, 714
MwoI	GCNNNNNNNGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	686
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 699
NlaIII	CATG	3 cut(s)	222, 409, 695
NlaIV	GGNNCC	2 cut(s)	70, 264
NmuCI	GTSAC	1 cut(s)	677
NspI	RCATGY	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 126
PctI	GAATGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	472, 612
Ppu21I	YACGTR	1 cut(s)	374
PshAI	GACNNNNGTC	1 cut(s)	744
PshBI	ATTAAT	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	186, 712
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	2 cut(s)	186, 712
PspN4I	GGNNCC	2 cut(s)	70, 264
PspPI	GGNCC	3 cut(s)	262, 436, 460
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	481, 699
RsaI	GTAC	2 cut(s)	185, 372
RsaNI	GTAC	2 cut(s)	184, 371
SalI	GTCGAC	1 cut(s)	747
SaqAI	TTAA	3 cut(s)	293, 396, 443
SatI	GCNGC	2 cut(s)	471, 611
Sau3AI	GATC	7 cut(s)	30, 34, 268, 337, 481, 510, 699
Sau96I	GGNCC	3 cut(s)	262, 436, 460
ScrFI	CCNGG	3 cut(s)	188, 686, 714
SexAI	ACCWGGT	1 cut(s)	712
SfaNI	GCATC	1 cut(s)	775
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	3 cut(s)	262, 436, 460
Sse9I	AATT	4 cut(s)	257, 464, 561, 624
SsiI	CCGC	2 cut(s)	72, 413
StyD4I	CCNGG	3 cut(s)	186, 684, 712
TaaI	ACNGT	2 cut(s)	298, 677
TaiI	ACGT	2 cut(s)	376, 542
TaqI	TCGA	4 cut(s)	9, 33, 381, 748
TaqII	GACCGA	1 cut(s)	756
TasI	AATT	4 cut(s)	257, 464, 561, 624
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	3 cut(s)	293, 396, 443
Tru9I	TTAA	3 cut(s)	293, 396, 443
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	2 cut(s)	470, 610
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	1 cut(s)	680
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	3 cut(s)	262, 436, 460
VspI	ATTAAT	1 cut(s)	396
XceI	RCATGY	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	748
XmnI	GAANNNNTTC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.