Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8460557.1

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1826

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8460557.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 347 bp

atgggcatagtaagaggaaagttggaccagttaagaaaatgctttgaggtccaatttgctgcagggagagatccgagacctgagcaacttgggagtatgatccaaactctatcaaactggttggttacgtcagacaaccttcttatctcaattcaagagaagatgagctgggcagataaaatgactgaactgaacaagcagcacaaaaaggaaattgaagacaaggtggaagatgtaaagagagcatattctatgaaggccgacagtgacttccgggggcatgaggagatctactccgaacctggtggagtgatggactatgaggaagaccgaagtcgaccaaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

115

Amino Acids

13.37

Weight (kDa)

5.45

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	337
AclWI	GGATC	2 cut(s)	65, 94
AgsI	TTSAA	2 cut(s)	155, 218
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	65, 94
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	59, 199
AspS9I	GGNCC	2 cut(s)	25, 49
AsuC2I	CCSGG	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	25, 49
BbsI	GAAGAC	2 cut(s)	225, 333
BbvI	GCAGC	2 cut(s)	46, 211
BccI	CCATC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	70
BfmI	CTRYAG	1 cut(s)	60
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	2 cut(s)	60, 200
BlsI	GCNGC	2 cut(s)	61, 201
Bme1390I	CCNGG	2 cut(s)	275, 303
Bme18I	GGWCC	2 cut(s)	25, 49
BmgT120I	GGNCC	2 cut(s)	25, 49
BmrFI	CCNGG	2 cut(s)	275, 303
BoxI	GACNNNNGTC	1 cut(s)	333
BpiI	GAAGAC	2 cut(s)	225, 333
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	28, 122
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	28, 122
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	46, 211
BseYI	CCCAGC	1 cut(s)	168
BshFI	GGCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	260
Bso31I	GGTCTC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	70, 99, 288
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	2 cut(s)	65, 94
BspTNI	GGTCTC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	28, 122
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	3 cut(s)	70, 99, 288
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	73, 102, 291
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	70, 99, 288
BstNI	CCWGG	1 cut(s)	303
BstPAI	GACNNNNGTC	1 cut(s)	333
BstSCI	CCNGG	2 cut(s)	273, 301
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	46, 211
BstV2I	GAAGAC	2 cut(s)	225, 333
BstX2I	RGATCY	2 cut(s)	70, 288
BstYI	RGATCY	2 cut(s)	70, 288
BsuRI	GGCC	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	25, 49
CsiI	ACCWGGT	1 cut(s)	301
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	2 cut(s)	168, 260
CviKI_1	RGCY	2 cut(s)	168, 260
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	3 cut(s)	72, 101, 290
DpnII	GATC	3 cut(s)	70, 99, 288
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	25, 49
EcoRII	CCWGG	1 cut(s)	301
FaeI	CATG	1 cut(s)	284
FaiI	YATR	6 cut(s)	8, 98, 247, 254, 282, 321
FatI	CATG	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	60, 200
Fsp4HI	GCNGC	2 cut(s)	60, 200
GluI	GCNGC	2 cut(s)	60, 200
GsaI	CCCAGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	338
HindII	GTYRAC	1 cut(s)	338
HpaII	CCGG	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	3 cut(s)	75, 133, 298
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	149, 250
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	284
Kzo9I	GATC	3 cut(s)	70, 99, 288
LpnPI	CCDG	8 cut(s)	41, 48, 93, 103, 154, 287, 288, 315
Lsp1109I	GCAGC	2 cut(s)	46, 211
MabI	ACCWGGT	1 cut(s)	301
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	124, 266
MalI	GATC	3 cut(s)	72, 101, 290
MboI	GATC	3 cut(s)	70, 99, 288
MboII	GAAGA	4 cut(s)	172, 230, 242, 338
MflI	RGATCY	2 cut(s)	70, 288
MluCI	AATT	3 cut(s)	53, 150, 213
MnlI	CCTC	4 cut(s)	8, 40, 277, 316
MseI	TTAA	1 cut(s)	32
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	2 cut(s)	275, 303
MvaI	CCWGG	1 cut(s)	303
NciI	CCSGG	1 cut(s)	275
NdeII	GATC	3 cut(s)	70, 99, 288
NlaIII	CATG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	61, 201
PshAI	GACNNNNGTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	301
PspPI	GGNCC	2 cut(s)	25, 49
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	70, 288
SalI	GTCGAC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	2 cut(s)	60, 200
Sau3AI	GATC	3 cut(s)	70, 99, 288
Sau96I	GGNCC	2 cut(s)	25, 49
ScrFI	CCNGG	2 cut(s)	275, 303
SetI	ASST	7 cut(s)	51, 82, 131, 141, 170, 228, 304
SexAI	ACCWGGT	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	2 cut(s)	25, 49
Sse9I	AATT	3 cut(s)	53, 150, 213
StyD4I	CCNGG	2 cut(s)	273, 301
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	337
TaqII	GACCGA	1 cut(s)	345
TasI	AATT	3 cut(s)	53, 150, 213
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	2 cut(s)	59, 199
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	2 cut(s)	25, 49
XmiI	GTMKAC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.