motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02090 AT1G02090 AT1G02090 |
| fragaria_vesca | FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 |
| malus_domestica | MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1 |
| prunus_persica | Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1 |
| pyrus_communis | pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110 |
| rosa_chinensis | RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651 |
| rosa_laevigata | RLG00000003442 RLG00000028719 |
| rosa_multiflora | Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00252910 Rroxscaffold_4G00307510 |
| rosa_rugosa | Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200 |
| rosa_samantha | Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800 |
| rosa_wichuraiana | Rw1G017280 Rw7G018650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 2 cut(s) | 106, 533 |
| AciI | CCGC | 1 cut(s) | 115 |
| AclWI | GGATC | 1 cut(s) | 10 |
| AcsI | RAATTY | 3 cut(s) | 122, 210, 434 |
| AcuI | CTGAAG | 2 cut(s) | 207, 537 |
| AfaI | GTAC | 1 cut(s) | 384 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 177 |
| AgsI | TTSAA | 5 cut(s) | 64, 236, 267, 406, 439 |
| AjnI | CCWGG | 1 cut(s) | 378 |
| AlwI | GGATC | 1 cut(s) | 10 |
| Ama87I | CYCGRG | 1 cut(s) | 194 |
| Aor13HI | TCCGGA | 2 cut(s) | 106, 533 |
| ApoI | RAATTY | 3 cut(s) | 122, 210, 434 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 277, 309 |
| AspS9I | GGNCC | 1 cut(s) | 104 |
| AsuHPI | GGTGA | 1 cut(s) | 25 |
| AvaI | CYCGRG | 1 cut(s) | 194 |
| AvaII | GGWCC | 1 cut(s) | 104 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 262, 294 |
| BccI | CCATC | 3 cut(s) | 75, 481, 531 |
| BceAI | ACGGC | 1 cut(s) | 493 |
| BciT130I | CCWGG | 1 cut(s) | 380 |
| BfaI | CTAG | 1 cut(s) | 386 |
| BglII | AGATCT | 1 cut(s) | 190 |
| Bme1390I | CCNGG | 1 cut(s) | 380 |
| Bme18I | GGWCC | 1 cut(s) | 104 |
| BmeT110I | CYCGRG | 1 cut(s) | 194 |
| BmgT120I | GGNCC | 1 cut(s) | 104 |
| BmrFI | CCNGG | 1 cut(s) | 380 |
| BoxI | GACNNNNGTC | 1 cut(s) | 518 |
| BsaJI | CCNNGG | 1 cut(s) | 9 |
| BsaWI | WCCGGW | 3 cut(s) | 106, 335, 533 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 22, 28, 52, 58 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 177 |
| BseAI | TCCGGA | 2 cut(s) | 106, 533 |
| BseBI | CCWGG | 1 cut(s) | 380 |
| BseDI | CCNNGG | 1 cut(s) | 9 |
| BseGI | GGATG | 2 cut(s) | 67, 542 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 177 |
| BseMII | CTCAG | 1 cut(s) | 83 |
| BseRI | GAGGAG | 6 cut(s) | 16, 30, 33, 36, 39, 42 |
| BsiHKCI | CYCGRG | 1 cut(s) | 194 |
| BsiSI | CCGG | 3 cut(s) | 107, 336, 534 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 177 |
| BsmI | GAATGC | 1 cut(s) | 326 |
| BsoBI | CYCGRG | 1 cut(s) | 194 |
| Bsp13I | TCCGGA | 2 cut(s) | 106, 533 |
| Bsp143I | GATC | 3 cut(s) | 15, 190, 388 |
| Bsp19I | CCATGG | 1 cut(s) | 9 |
| BspACI | CCGC | 1 cut(s) | 115 |
| BspCNI | CTCAG | 1 cut(s) | 84 |
| BspEI | TCCGGA | 2 cut(s) | 106, 533 |
| BspPI | GGATC | 1 cut(s) | 10 |
| BssECI | CCNNGG | 1 cut(s) | 9 |
| BssMI | GATC | 3 cut(s) | 15, 190, 388 |
| BssT1I | CCWWGG | 1 cut(s) | 9 |
| Bst2UI | CCWGG | 1 cut(s) | 380 |
| BstDEI | CTNAG | 1 cut(s) | 92 |
| BstDSI | CCRYGG | 1 cut(s) | 9 |
| BstF5I | GGATG | 2 cut(s) | 67, 542 |
| BstKTI | GATC | 3 cut(s) | 18, 193, 391 |
| BstMBI | GATC | 3 cut(s) | 15, 190, 388 |
| BstNI | CCWGG | 1 cut(s) | 380 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 518 |
| BstSCI | CCNGG | 1 cut(s) | 378 |
| BstX2I | RGATCY | 1 cut(s) | 190 |
| BstYI | RGATCY | 1 cut(s) | 190 |
| BtgI | CCRYGG | 1 cut(s) | 9 |
| BtgZI | GCGATG | 1 cut(s) | 328 |
| BtsCI | GGATG | 2 cut(s) | 67, 542 |
| Cfr13I | GGNCC | 1 cut(s) | 104 |
| CsiI | ACCWGGT | 1 cut(s) | 378 |
| Csp6I | GTAC | 1 cut(s) | 383 |
| CviAII | CATG | 3 cut(s) | 10, 288, 425 |
| CviJI | RGCY | 1 cut(s) | 5 |
| CviKI_1 | RGCY | 1 cut(s) | 5 |
| CviQI | GTAC | 1 cut(s) | 383 |
| DdeI | CTNAG | 1 cut(s) | 92 |
| DpnI | GATC | 3 cut(s) | 17, 192, 390 |
| DpnII | GATC | 3 cut(s) | 15, 190, 388 |
| DraI | TTTAAA | 1 cut(s) | 546 |
| Eco130I | CCWWGG | 1 cut(s) | 9 |
| Eco47I | GGWCC | 1 cut(s) | 104 |
| Eco57I | CTGAAG | 2 cut(s) | 207, 537 |
| Eco88I | CYCGRG | 1 cut(s) | 194 |
| EcoRI | GAATTC | 1 cut(s) | 434 |
| EcoRII | CCWGG | 1 cut(s) | 378 |
| EcoT14I | CCWWGG | 1 cut(s) | 9 |
| EcoT22I | ATGCAT | 1 cut(s) | 326 |
| ErhI | CCWWGG | 1 cut(s) | 9 |
| FaeI | CATG | 3 cut(s) | 13, 291, 428 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 398, 430 |
| FatI | CATG | 3 cut(s) | 9, 287, 424 |
| FokI | GGATG | 2 cut(s) | 54, 549 |
| FspBI | CTAG | 1 cut(s) | 386 |
| HapII | CCGG | 3 cut(s) | 107, 336, 534 |
| Hin1II | CATG | 3 cut(s) | 13, 291, 428 |
| HincII | GTYRAC | 1 cut(s) | 513 |
| HindII | GTYRAC | 1 cut(s) | 513 |
| HinfI | GANTC | 2 cut(s) | 182, 339 |
| HpaII | CCGG | 3 cut(s) | 107, 336, 534 |
| HphI | GGTGA | 1 cut(s) | 25 |
| Hpy166II | GTNNAC | 1 cut(s) | 513 |
| Hpy188I | TCNGA | 2 cut(s) | 93, 187 |
| Hpy188III | TCNNGA | 6 cut(s) | 107, 158, 194, 392, 406, 534 |
| Hpy8I | GTNNAC | 1 cut(s) | 513 |
| HpyAV | CCTTC | 2 cut(s) | 155, 389 |
| HpyCH4V | TGCA | 2 cut(s) | 251, 324 |
| HpyF3I | CTNAG | 1 cut(s) | 92 |
| Hsp92II | CATG | 3 cut(s) | 13, 291, 428 |
| Kpn2I | TCCGGA | 2 cut(s) | 106, 533 |
| Kzo9I | GATC | 3 cut(s) | 15, 190, 388 |
| LpnPI | CCDG | 9 cut(s) | 120, 185, 349, 365, 366, 392, 416, 538, 547 |
| MabI | ACCWGGT | 1 cut(s) | 378 |
| MaeI | CTAG | 1 cut(s) | 386 |
| MaeIII | GTNAC | 1 cut(s) | 269 |
| MalI | GATC | 3 cut(s) | 17, 192, 390 |
| MboI | GATC | 3 cut(s) | 15, 190, 388 |
| MboII | GAAGA | 2 cut(s) | 200, 273 |
| MfeI | CAATTG | 1 cut(s) | 231 |
| MflI | RGATCY | 1 cut(s) | 190 |
| MluCI | AATT | 6 cut(s) | 122, 146, 210, 231, 246, 434 |
| MlyI | GAGTC | 1 cut(s) | 333 |
| Mph1103I | ATGCAT | 1 cut(s) | 326 |
| MroI | TCCGGA | 2 cut(s) | 106, 533 |
| MseI | TTAA | 1 cut(s) | 545 |
| MslI | CAYNNNNRTG | 2 cut(s) | 452, 485 |
| MspI | CCGG | 3 cut(s) | 107, 336, 534 |
| MspR9I | CCNGG | 1 cut(s) | 380 |
| MunI | CAATTG | 1 cut(s) | 231 |
| Mva1269I | GAATGC | 1 cut(s) | 326 |
| MvaI | CCWGG | 1 cut(s) | 380 |
| NcoI | CCATGG | 1 cut(s) | 9 |
| NdeII | GATC | 3 cut(s) | 15, 190, 388 |
| NlaIII | CATG | 3 cut(s) | 13, 291, 428 |
| NsiI | ATGCAT | 1 cut(s) | 326 |
| PaeR7I | CTCGAG | 1 cut(s) | 194 |
| PctI | GAATGC | 1 cut(s) | 326 |
| PfeI | GAWTC | 1 cut(s) | 182 |
| PleI | GAGTC | 1 cut(s) | 333 |
| PpsI | GAGTC | 1 cut(s) | 333 |
| PshAI | GACNNNNGTC | 1 cut(s) | 518 |
| Psp6I | CCWGG | 1 cut(s) | 378 |
| PspGI | CCWGG | 1 cut(s) | 378 |
| PspPI | GGNCC | 1 cut(s) | 104 |
| PsuI | RGATCY | 1 cut(s) | 190 |
| RsaI | GTAC | 1 cut(s) | 384 |
| RsaNI | GTAC | 1 cut(s) | 383 |
| RseI | CAYNNNNRTG | 2 cut(s) | 452, 485 |
| SaqAI | TTAA | 1 cut(s) | 545 |
| Sau3AI | GATC | 3 cut(s) | 15, 190, 388 |
| Sau96I | GGNCC | 1 cut(s) | 104 |
| SchI | GAGTC | 1 cut(s) | 333 |
| ScrFI | CCNGG | 1 cut(s) | 380 |
| SetI | ASST | 6 cut(s) | 26, 61, 106, 176, 384, 557 |
| SexAI | ACCWGGT | 1 cut(s) | 378 |
| Sfr274I | CTCGAG | 1 cut(s) | 194 |
| SinI | GGWCC | 1 cut(s) | 104 |
| SlaI | CTCGAG | 1 cut(s) | 194 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 452, 485 |
| SmlI | CTYRAG | 1 cut(s) | 194 |
| SmoI | CTYRAG | 1 cut(s) | 194 |
| Sse9I | AATT | 6 cut(s) | 122, 146, 210, 231, 246, 434 |
| SsiI | CCGC | 1 cut(s) | 115 |
| SspMI | CTAG | 1 cut(s) | 386 |
| StyD4I | CCNGG | 1 cut(s) | 378 |
| StyI | CCWWGG | 1 cut(s) | 9 |
| TaqI | TCGA | 4 cut(s) | 195, 242, 284, 318 |
| TasI | AATT | 6 cut(s) | 122, 146, 210, 231, 246, 434 |
| TfiI | GAWTC | 1 cut(s) | 182 |
| Tru1I | TTAA | 1 cut(s) | 545 |
| Tru9I | TTAA | 1 cut(s) | 545 |
| TspDTI | ATGAA | 1 cut(s) | 441 |
| VpaK11BI | GGWCC | 1 cut(s) | 104 |
| XapI | RAATTY | 3 cut(s) | 122, 210, 434 |
| XhoI | CTCGAG | 1 cut(s) | 194 |
| XspI | CTAG | 1 cut(s) | 386 |
| Zsp2I | ATGCAT | 1 cut(s) | 326 |