Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

22643280 .. 22649191

Gene Structure 5912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1211700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGATTGAGCAAAAGCAAGAGGAGGTCATCGATCACTTCGTGAAGCAAGCCTCATCTCTCGACGGCTCCGCCCTCGGCCCCCTCGTCGCGGAAGCCACCTCCCACCCTGCGCTTTTCGCCTTTTCGGAGATTATCGCCGTACCTAATATTCTTCAGCTTGAAGGAACTGAAAATTCTGTGTACCTGGATCTGCTTCGATTGTTTGCACACGGCACATGGAGCGATTACAAGAGTGATGCCAGTCGCCTACCACAGTTGGTCCCTGATCAAGTCTTAAAGCTGAAGCAGCTCACTGTTCTTACACTGGCTGAGACAAACAAGGTACTACCGTATGATCAACTTATACAGGAGTTAGATGTTATTAATGTACGTGGGCTCGAGGATTTTCTCATTAATGAGTGCATGTATTCGGGCATAATAAGAGGAAAGCTGGATCAGCTGCGAAAATGCTTTGAGGTACAGTTTGCTGCTGGGAGAGATCCGAGACCTGGACAACTTGGGAGTATGATTCAAACACTGTCAAACTGGTTGGATACCTCGAACAATCTTCTTATCTCAATTCAAGAAAAGATTAAGTGGGCTGATGCTATGACTGAAGTAGCCAAGGAACACAAAAGAGAGGTTGAAAATAGGGTGGAAGAAGTAAAGAAGTCGATTTCCATGAAGGCCGACGTTGACCTCCGGGGGCACGAGGAGACCTACTCCGAACCTGGTGGAGTGATGGACTATGAGGAAGACCGAAGTCGACCAAAGAGGAGACGGCATCCAATATATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

261

Amino Acids

29.64

Weight (kDa)

5.2

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	748
AccII	CGCG	1 cut(s)	92
AciI	CCGC	2 cut(s)	72, 92
AclWI	GGATC	3 cut(s)	198, 444, 476
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	3 cut(s)	140, 305, 618
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	5 cut(s)	144, 185, 327, 372, 462
AfiI	CCNNNNNNNGG	2 cut(s)	91, 491
AgsI	TTSAA	4 cut(s)	164, 515, 566, 629
AjnI	CCWGG	3 cut(s)	186, 490, 712
AluBI	AGCT	5 cut(s)	160, 283, 292, 433, 442
AluI	AGCT	5 cut(s)	160, 283, 292, 433, 442
Alw26I	GTCTC	4 cut(s)	308, 481, 692, 754
AlwI	GGATC	3 cut(s)	198, 444, 476
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	2 cut(s)	79, 669
ApeKI	GCWGC	3 cut(s)	289, 442, 470
ApoI	RAATTY	1 cut(s)	175
AseI	ATTAAT	2 cut(s)	366, 396
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	80, 262
AsuC2I	CCSGG	1 cut(s)	686
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	693
BaeI	ACNNNNGTAYC	2 cut(s)	317, 350
BanII	GRGCYC	1 cut(s)	381
BauI	CACGAG	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	744
BbvI	GCAGC	3 cut(s)	301, 429, 457
BccI	CCATC	1 cut(s)	718
BceAI	ACGGC	4 cut(s)	82, 125, 229, 779
BciT130I	CCWGG	3 cut(s)	188, 492, 714
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	2 cut(s)	268, 337
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	4 cut(s)	308, 481, 692, 754
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	3 cut(s)	290, 443, 471
BlsI	GCNGC	3 cut(s)	291, 444, 472
Bme1390I	CCNGG	4 cut(s)	188, 492, 686, 714
Bme18I	GGWCC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	80, 262
BmiI	GGNNCC	3 cut(s)	70, 82, 264
BmrFI	CCNGG	4 cut(s)	188, 492, 686, 714
BmsI	GCATC	3 cut(s)	229, 577, 775
BoxI	GACNNNNGTC	1 cut(s)	744
BpiI	GAAGAC	1 cut(s)	744
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
BpuMI	CCSGG	1 cut(s)	686
Bsa29I	ATCGAT	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	374
BsaI	GGTCTC	2 cut(s)	481, 692
BsaJI	CCNNGG	3 cut(s)	76, 606, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 491
Bse1I	ACTGG	3 cut(s)	243, 312, 533
BseBI	CCWGG	3 cut(s)	188, 492, 714
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	3 cut(s)	76, 606, 685
BseGI	GGATG	1 cut(s)	766
BseLI	CCNNNNNNNGG	2 cut(s)	91, 491
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	3 cut(s)	243, 312, 533
BseRI	GAGGAG	3 cut(s)	38, 710, 772
BseSI	GKGCMC	1 cut(s)	693
BseXI	GCAGC	3 cut(s)	301, 429, 457
BseYI	CCCAGC	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	81, 671
BshVI	ATCGAT	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	685
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	91, 491
BsmAI	GTCTC	4 cut(s)	308, 481, 692, 754
BsmBI	CGTCTC	1 cut(s)	754
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	81, 671
Bso31I	GGTCTC	2 cut(s)	481, 692
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	2 cut(s)	381, 693
Bsp143I	GATC	6 cut(s)	34, 190, 268, 337, 436, 481
BspACI	CCGC	2 cut(s)	72, 92
BspANI	GGCC	2 cut(s)	81, 671
BspCNI	CTCAG	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	3 cut(s)	70, 82, 264
BspPI	GGATC	3 cut(s)	198, 444, 476
BspTNI	GGTCTC	2 cut(s)	481, 692
BsrI	ACTGG	3 cut(s)	243, 312, 533
BssECI	CCNNGG	3 cut(s)	76, 606, 685
BssMI	GATC	6 cut(s)	34, 190, 268, 337, 436, 481
BssSI	CACGAG	1 cut(s)	692
BssT1I	CCWWGG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	692
Bst2UI	CCWGG	3 cut(s)	188, 492, 714
Bst4CI	ACNGT	5 cut(s)	258, 298, 333, 465, 522
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	766
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	6 cut(s)	37, 193, 271, 340, 439, 484
BstMAI	GTCTC	4 cut(s)	308, 481, 692, 754
BstMBI	GATC	6 cut(s)	34, 190, 268, 337, 436, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 222, 289, 439
BstNI	CCWGG	3 cut(s)	188, 492, 714
BstNSI	RCATGY	1 cut(s)	409
BstPAI	GACNNNNGTC	1 cut(s)	744
BstSCI	CCNGG	4 cut(s)	186, 490, 684, 712
BstSLI	GKGCMC	1 cut(s)	693
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	301, 429, 457
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	2 cut(s)	190, 481
BstYI	RGATCY	2 cut(s)	190, 481
Bsu15I	ATCGAT	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	81, 671
BsuTUI	ATCGAT	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	766
BtsIMutI	CAGTG	3 cut(s)	294, 305, 518
Cac8I	GCNNGC	1 cut(s)	51
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	80, 262
ClaI	ATCGAT	1 cut(s)	33
CsiI	ACCWGGT	1 cut(s)	712
Csp6I	GTAC	5 cut(s)	143, 184, 326, 371, 461
CviAII	CATG	3 cut(s)	219, 406, 664
CviQI	GTAC	5 cut(s)	143, 184, 326, 371, 461
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	6 cut(s)	36, 192, 270, 339, 438, 483
DpnII	GATC	6 cut(s)	34, 190, 268, 337, 436, 481
DraIII	CACNNNGTG	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	381
Eco31I	GGTCTC	2 cut(s)	481, 692
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	3 cut(s)	140, 305, 618
Eco88I	CYCGRG	1 cut(s)	380
EcoRII	CCWGG	3 cut(s)	186, 490, 712
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	606
Esp3I	CGTCTC	1 cut(s)	754
FaeI	CATG	3 cut(s)	222, 409, 667
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	218, 405, 663
FbaI	TGATCA	2 cut(s)	268, 337
FblI	GTMKAC	1 cut(s)	748
Fnu4HI	GCNGC	3 cut(s)	290, 443, 471
FokI	GGATG	1 cut(s)	753
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	3 cut(s)	290, 443, 471
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	3 cut(s)	290, 443, 471
GsaI	CCCAGC	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	81, 671
HapII	CCGG	1 cut(s)	685
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	222, 409, 667
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	2 cut(s)	679, 749
HindII	GTYRAC	2 cut(s)	679, 749
HinfI	GANTC	1 cut(s)	511
HpaII	CCGG	1 cut(s)	685
Hpy166II	GTNNAC	3 cut(s)	184, 679, 749
Hpy188I	TCNGA	3 cut(s)	130, 486, 709
Hpy188III	TCNNGA	3 cut(s)	43, 62, 566
Hpy8I	GTNNAC	3 cut(s)	184, 679, 749
Hpy99I	CGWCG	3 cut(s)	68, 92, 677
HpyAV	CCTTC	2 cut(s)	158, 661
HpyCH4III	ACNGT	5 cut(s)	258, 298, 333, 465, 522
HpyCH4IV	ACGT	2 cut(s)	373, 675
HpyCH4V	TGCA	2 cut(s)	209, 405
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 222, 289, 439
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	2 cut(s)	373, 675
Hsp92II	CATG	3 cut(s)	222, 409, 667
HspAI	GCGC	1 cut(s)	113
Ksp22I	TGATCA	2 cut(s)	268, 337
Kzo9I	GATC	6 cut(s)	34, 190, 268, 337, 436, 481
LmnI	GCTCC	2 cut(s)	74, 222
Lsp1109I	GCAGC	3 cut(s)	301, 429, 457
LweI	GCATC	3 cut(s)	229, 577, 775
MabI	ACCWGGT	1 cut(s)	712
MaeII	ACGT	2 cut(s)	373, 675
MalI	GATC	6 cut(s)	36, 192, 270, 339, 438, 483
MboI	GATC	6 cut(s)	34, 190, 268, 337, 436, 481
MboII	GAAGA	4 cut(s)	146, 542, 653, 749
MflI	RGATCY	2 cut(s)	190, 481
MhlI	GDGCHC	2 cut(s)	381, 693
MluCI	AATT	2 cut(s)	175, 561
MmeI	TCCRAC	1 cut(s)	513
MseI	TTAA	4 cut(s)	278, 366, 396, 576
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	1 cut(s)	685
MspR9I	CCNGG	4 cut(s)	188, 492, 686, 714
MvaI	CCWGG	3 cut(s)	188, 492, 714
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	4 cut(s)	119, 222, 289, 439
NciI	CCSGG	1 cut(s)	686
NdeII	GATC	6 cut(s)	34, 190, 268, 337, 436, 481
NlaIII	CATG	3 cut(s)	222, 409, 667
NlaIV	GGNNCC	3 cut(s)	70, 82, 264
NmeAIII	GCCGAG	1 cut(s)	57
NspI	RCATGY	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 84
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	3 cut(s)	291, 444, 472
Ppu21I	YACGTR	1 cut(s)	374
PshAI	GACNNNNGTC	1 cut(s)	744
PshBI	ATTAAT	2 cut(s)	366, 396
Psp6I	CCWGG	3 cut(s)	186, 490, 712
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	3 cut(s)	186, 490, 712
PspN4I	GGNNCC	3 cut(s)	70, 82, 264
PspPI	GGNCC	2 cut(s)	80, 262
PspXI	VCTCGAGB	1 cut(s)	380
PsuI	RGATCY	2 cut(s)	190, 481
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	5 cut(s)	144, 185, 327, 372, 462
RsaNI	GTAC	5 cut(s)	143, 184, 326, 371, 461
SalI	GTCGAC	1 cut(s)	747
SaqAI	TTAA	4 cut(s)	278, 366, 396, 576
SatI	GCNGC	3 cut(s)	290, 443, 471
Sau3AI	GATC	6 cut(s)	34, 190, 268, 337, 436, 481
Sau96I	GGNCC	2 cut(s)	80, 262
ScrFI	CCNGG	4 cut(s)	188, 492, 686, 714
SduI	GDGCHC	2 cut(s)	381, 693
SexAI	ACCWGGT	1 cut(s)	712
SfaNI	GCATC	3 cut(s)	229, 577, 775
Sfr274I	CTCGAG	1 cut(s)	380
SinI	GGWCC	1 cut(s)	262
SlaI	CTCGAG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	2 cut(s)	175, 561
SsiI	CCGC	2 cut(s)	72, 92
SspI	AATATT	1 cut(s)	151
StyD4I	CCNGG	4 cut(s)	186, 490, 684, 712
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	5 cut(s)	258, 298, 333, 465, 522
TaiI	ACGT	2 cut(s)	376, 678
TaqI	TCGA	7 cut(s)	33, 63, 199, 381, 542, 656, 748
TaqII	GACCGA	1 cut(s)	756
TasI	AATT	2 cut(s)	175, 561
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	4 cut(s)	278, 366, 396, 576
Tru9I	TTAA	4 cut(s)	278, 366, 396, 576
TscAI	CASTG	3 cut(s)	301, 312, 525
TseI	GCWGC	3 cut(s)	289, 442, 470
TspDTI	ATGAA	1 cut(s)	680
TspRI	CASTG	3 cut(s)	301, 312, 525
VpaK11BI	GGWCC	1 cut(s)	262
VspI	ATTAAT	2 cut(s)	366, 396
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.