Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

22341500 .. 22348694

Gene Structure 7195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGATAGAGCAGAAACAAGCCCAGCTGATCGATCACTTTGTGAAGCAAGCCTCTACTCTCCAAGGCTCTTCTCTCGTCAGCCTCATCGTCCAACTCACCTCTCACAATTCCCTCTTCGCTTTCTCTGAGATTCTGGCCGTCCCCAATGTCCTCCAGTTTTGGCTTCAAGGAACCGAATATGCTGTATACATTGATATGCTTCGCCTCTTTGCTCATGGTACATGGAGCGATTATAAAAGTAATGCTAGCCTTCTTCCACCACTAGTCCCAGATCAAATCAACAAGCTGAAGCAACTTACTGTGCTGTCTCTAGCTGAGGCGAACAAGGTTCTATCCTATGATCAACTCCTTGAGCAACTTGATCTTTCAAATGTACGTGAACTTGAAGACTTTCTTATCAATGAATGCATGTATATGGGCATAATCAAAGGGAAGTTGGATCATTTGAAAAGATCTGTTGAGGTTCAGTTTGCAGCTGGGAGGGATCTGAAACCTGGACAGCTTGGGAATATAATAGAGACCTTAACGGATTGGTTAGCCACTACCGACAATGTACTTCTCACAATTGAGGAGAAGATCAAATGGGCAGATAAGAAGTGTGAGTTGAATGCAACACACCAAAAGGAAGTCAAGGACAGAGTAGAAGAAGTGAAGAAGTCTCTTAGTCACAACAGGTTGCCTCGTGAATATCGTGTTGAAGACTTTATGTTTGGTGAACCAGCTGGATTAATGGACTATGAAGAAGATCGAACCCGAATGAAGAGGAGAAGGTCGCCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

262

Amino Acids

30.27

Weight (kDa)

5.76

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN7_HB_subdom	PF22061	13 - 43	9.5e-06	CSN7 helical bundle subdomain
PCI	PF01399	84 - 157	8.2e-08	PCI domain
CSN7a_helixI	PF18392	169 - 215	9.8e-06	COP9 signalosome complex subunit 7a helix I domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	189
AclWI	GGATC	2 cut(s)	450, 495
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	311
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	3 cut(s)	223, 378, 558
AgsI	TTSAA	6 cut(s)	170, 372, 389, 451, 610, 701
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	6 cut(s)	28, 289, 317, 479, 505, 725
AluI	AGCT	6 cut(s)	28, 289, 317, 479, 505, 725
Alw26I	GTCTC	3 cut(s)	315, 515, 666
AlwI	GGATC	2 cut(s)	450, 495
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	476
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AseI	ATTAAT	1 cut(s)	731
Asp700I	GAANNNNTTC	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	91, 728
AsuNHI	GCTAGC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	684
BbsI	GAAGAC	2 cut(s)	396, 708
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	488
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	498
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	3 cut(s)	315, 515, 666
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	3 cut(s)	249, 266, 314
BglII	AGATCT	1 cut(s)	455
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	1 cut(s)	498
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	498
BmtI	GCTAGC	1 cut(s)	252
BpiI	GAAGAC	2 cut(s)	396, 708
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	120, 309
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	587, 781
BseXI	GCAGC	1 cut(s)	488
BseYI	CCCAGC	2 cut(s)	24, 479
BshFI	GGCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	128, 254
BsmAI	GTCTC	3 cut(s)	315, 515, 666
BsmFI	GGGAC	2 cut(s)	128, 254
BsmI	GAATGC	2 cut(s)	413, 616
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	515
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	2 cut(s)	121, 310
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	175
BspOI	GCTAGC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	450, 495
BspQI	GCTCTTC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	515
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	64
BssNAI	GTATAC	1 cut(s)	190
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	64
Bst1107I	GTATAC	1 cut(s)	190
Bst2BI	CACGAG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	3 cut(s)	76, 122, 758
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	51, 250
BstDEI	CTNAG	3 cut(s)	129, 318, 665
BstMAI	GTCTC	3 cut(s)	315, 515, 666
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	496
BstV1I	GCAGC	1 cut(s)	488
BstV2I	GAAGAC	2 cut(s)	396, 708
BstX2I	RGATCY	2 cut(s)	455, 487
BstYI	RGATCY	2 cut(s)	455, 487
BstZ17I	GTATAC	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	51, 250
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	3 cut(s)	222, 377, 557
CviAII	CATG	3 cut(s)	218, 225, 412
CviQI	GTAC	3 cut(s)	222, 377, 557
DdeI	CTNAG	3 cut(s)	129, 318, 665
DraIII	CACNNNGTG	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	76, 122, 758
EarI	CTCTTC	3 cut(s)	76, 122, 758
Eco130I	CCWWGG	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	3 cut(s)	221, 228, 415
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	2 cut(s)	128, 254
FatI	CATG	3 cut(s)	217, 224, 411
FbaI	TGATCA	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	477
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	3 cut(s)	249, 266, 314
GluI	GCNGC	1 cut(s)	477
GsaI	CCCAGC	2 cut(s)	28, 483
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	221, 228, 415
HinfI	GANTC	1 cut(s)	133
HphI	GGTGA	2 cut(s)	91, 728
Hpy166II	GTNNAC	3 cut(s)	190, 383, 719
Hpy188I	TCNGA	2 cut(s)	130, 492
Hpy188III	TCNNGA	1 cut(s)	686
Hpy8I	GTNNAC	3 cut(s)	190, 383, 719
HpyAV	CCTTC	2 cut(s)	263, 765
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	411, 476, 614
HpyF3I	CTNAG	3 cut(s)	129, 318, 665
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	221, 228, 415
Ksp22I	TGATCA	1 cut(s)	343
LguI	GCTCTTC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	228
Lsp1109I	GCAGC	1 cut(s)	488
MaeI	CTAG	3 cut(s)	249, 266, 314
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	668
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	2 cut(s)	455, 487
MluCI	AATT	2 cut(s)	109, 567
MmeI	TCCRAC	2 cut(s)	118, 420
Mph1103I	ATGCAT	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	2 cut(s)	527, 731
MslI	CAYNNNNRTG	2 cut(s)	197, 416
MspA1I	CMGCKG	3 cut(s)	28, 479, 725
MspR9I	CCNGG	1 cut(s)	498
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	2 cut(s)	413, 616
MvaI	CCWGG	1 cut(s)	498
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	3 cut(s)	221, 228, 415
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	668
NsiI	ATGCAT	1 cut(s)	413
NspI	RCATGY	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	691
PctI	GAATGC	2 cut(s)	413, 616
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	478
Ppu21I	YACGTR	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	731
PsiI	TTATAA	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	496
PspFI	CCCAGC	2 cut(s)	24, 479
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	175
PsuI	RGATCY	2 cut(s)	455, 487
PvuII	CAGCTG	3 cut(s)	28, 479, 725
RsaI	GTAC	3 cut(s)	223, 378, 558
RsaNI	GTAC	3 cut(s)	222, 377, 557
RseI	CAYNNNNRTG	2 cut(s)	197, 416
SapI	GCTCTTC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	527, 731
SatI	GCNGC	1 cut(s)	477
ScrFI	CCNGG	1 cut(s)	498
SmiMI	CAYNNNNRTG	2 cut(s)	197, 416
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	2 cut(s)	109, 567
SspMI	CTAG	3 cut(s)	249, 266, 314
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	33, 751
TasI	AATT	2 cut(s)	109, 567
TatI	WGTACW	1 cut(s)	556
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	527, 731
Tru9I	TTAA	2 cut(s)	527, 731
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	3 cut(s)	420, 756, 776
TspGWI	ACGGA	1 cut(s)	545
VspI	ATTAAT	1 cut(s)	731
XceI	RCATGY	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	3 cut(s)	249, 266, 314
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.