Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Forward (+)

4841045 .. 4847633

Gene Structure 6589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05130.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGGTAGAGCAGAAGCAAGCCCAGGTGATCGAGCACTTCGTGAAGCAAGCCTCTAGTCTCCAGGGGTCCTCTCTCGTCAGCCTCATAGTCCAACTCACCTCTCATTCTTCTCTCTTCGTTTTCTCCGAGATTTTGGCTGTCCCCAATGTGCTCGAGCTTCAAGGAACAGGATTTGCTGTATACATTGATCTGCTTCGTCTCTTTGCTCATGGAACATGGAGTGACTATAAGAGTAATGCTAGCCTTCTTCCACCACTAGTCCCAGATCAAATCACCAAGCTGAAGCAACTTACTGTGCTTTCTCTAGCTGAGATGAACCGGGTTTTATCATATGATCAACTTCTTGAACAGCTTGATCTTTCAAATGTGCGTGAACTCGAAGACTTTCTTATCAATGATTGCATGTATGCGGGCATAGTCAAAGGGAAGTTGGATCATTTGAGAAGATCTTTTGAGGTTCAATTTGCAGCTGGGAGGGATTTGAGACCTGGACAACTAGGGAATCTTATACAGACTTTAGATGATTGGTTAGACACTACAAACAATGCGCTTCTCACAATTGAAGAGAAGATCGATGGGCAGATAAAAAGTGTGAGTTGGATGCAATACACAAAAAGGCAGTCAATGACAGGGTGGAAGAAGTCAAGAAGTCTGTCAATAACAAGGGTGGGCGAGACTTCCAAGCCTTTGATGACATTCTGTTTGGTGAAACAGCTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

242

Amino Acids

27.22

Weight (kDa)

5.85

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	444
AcuI	CTGAAG	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	43
AgsI	TTSAA	5 cut(s)	164, 350, 366, 464, 566
AhlI	ACTAGT	1 cut(s)	259
AjnI	CCWGG	3 cut(s)	24, 63, 490
AluBI	AGCT	6 cut(s)	160, 283, 311, 355, 473, 718
AluI	AGCT	6 cut(s)	160, 283, 311, 355, 473, 718
Alw21I	GWGCWC	2 cut(s)	39, 156
Alw26I	GTCTC	4 cut(s)	65, 206, 481, 671
AlwI	GGATC	1 cut(s)	444
Ama87I	CYCGRG	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	470
ArsI	GACNNNNNNTTYG	4 cut(s)	608, 640, 688, 720
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	40, 91, 268, 721
AsuNHI	GCTAGC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	39, 156
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	1 cut(s)	572
BciT130I	CCWGG	3 cut(s)	26, 65, 492
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	4 cut(s)	65, 206, 481, 671
BcuI	ACTAGT	1 cut(s)	259
BfaI	CTAG	5 cut(s)	57, 243, 260, 308, 500
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	4 cut(s)	26, 65, 323, 492
Bme18I	GGWCC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	4 cut(s)	26, 65, 323, 492
BmsI	GCATC	1 cut(s)	594
BmtI	GCTAGC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	576
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	24, 64
BseBI	CCWGG	3 cut(s)	26, 65, 492
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	24, 64
BseGI	GGATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	482
BseYI	CCCAGC	1 cut(s)	473
BshVI	ATCGAT	1 cut(s)	576
BsiHKAI	GWGCWC	2 cut(s)	39, 156
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	2 cut(s)	128, 248
BsmAI	GTCTC	4 cut(s)	65, 206, 481, 671
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	128, 248
Bso31I	GGTCTC	1 cut(s)	481
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	39, 156
Bsp143I	GATC	8 cut(s)	30, 190, 268, 337, 358, 436, 449, 573
BspACI	CCGC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	576
BspLI	GGNNCC	1 cut(s)	70
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	24, 64
BssMI	GATC	8 cut(s)	30, 190, 268, 337, 358, 436, 449, 573
BssNAI	GTATAC	1 cut(s)	184
Bst1107I	GTATAC	1 cut(s)	184
Bst2UI	CCWGG	3 cut(s)	26, 65, 492
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	2 cut(s)	122, 561
BstC8I	GCNNGC	4 cut(s)	21, 51, 244, 415
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	609
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	8 cut(s)	33, 193, 271, 340, 361, 439, 452, 576
BstMAI	GTCTC	4 cut(s)	65, 206, 481, 671
BstMBI	GATC	8 cut(s)	30, 190, 268, 337, 358, 436, 449, 573
BstNI	CCWGG	3 cut(s)	26, 65, 492
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	4 cut(s)	24, 63, 321, 490
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	449
BstZ17I	GTATAC	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	576
BsuTUI	ATCGAT	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	609
Cac8I	GCNNGC	4 cut(s)	21, 51, 244, 415
CfoI	GCGC	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	69
ClaI	ATCGAT	1 cut(s)	576
CviAII	CATG	3 cut(s)	212, 219, 406
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	8 cut(s)	32, 192, 270, 339, 360, 438, 451, 575
DpnII	GATC	8 cut(s)	30, 190, 268, 337, 358, 436, 449, 573
DraIII	CACNNNGTG	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	122, 561
EarI	CTCTTC	2 cut(s)	122, 561
Eco31I	GGTCTC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	24, 63, 490
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	3 cut(s)	215, 222, 409
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	2 cut(s)	128, 248
FatI	CATG	3 cut(s)	211, 218, 405
FauI	CCCGC	1 cut(s)	406
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	1 cut(s)	616
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	5 cut(s)	57, 243, 260, 308, 500
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	471
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	47
HapII	CCGG	1 cut(s)	322
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	3 cut(s)	215, 222, 409
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HinfI	GANTC	1 cut(s)	505
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	4 cut(s)	40, 91, 268, 721
Hpy166II	GTNNAC	2 cut(s)	184, 377
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	3 cut(s)	43, 347, 648
Hpy8I	GTNNAC	2 cut(s)	184, 377
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	405, 470, 607
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	215, 222, 409
HspAI	GCGC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	8 cut(s)	30, 190, 268, 337, 358, 436, 449, 573
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	1 cut(s)	594
MaeI	CTAG	5 cut(s)	57, 243, 260, 308, 500
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	8 cut(s)	32, 192, 270, 339, 360, 438, 451, 575
MboI	GATC	8 cut(s)	30, 190, 268, 337, 358, 436, 449, 573
MboII	GAAGA	8 cut(s)	102, 109, 242, 395, 459, 578, 583, 652
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	449
MhlI	GDGCHC	2 cut(s)	39, 156
MluCI	AATT	2 cut(s)	464, 561
MmeI	TCCRAC	3 cut(s)	118, 414, 581
MnlI	CCTC	6 cut(s)	64, 82, 95, 112, 451, 471
MroXI	GAANNNNTTC	1 cut(s)	387
MspA1I	CMGCKG	2 cut(s)	473, 718
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	4 cut(s)	26, 65, 323, 492
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	3 cut(s)	26, 65, 492
NciI	CCSGG	1 cut(s)	323
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	8 cut(s)	30, 190, 268, 337, 358, 436, 449, 573
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	3 cut(s)	215, 222, 409
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 126
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	69
Psp6I	CCWGG	3 cut(s)	24, 63, 490
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	3 cut(s)	24, 63, 490
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	69
PspPPI	RGGWCCY	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	449
PvuII	CAGCTG	2 cut(s)	473, 718
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	8 cut(s)	30, 190, 268, 337, 358, 436, 449, 573
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	4 cut(s)	26, 65, 323, 492
SduI	GDGCHC	2 cut(s)	39, 156
SfaNI	GCATC	1 cut(s)	594
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SpeI	ACTAGT	1 cut(s)	259
Sse9I	AATT	2 cut(s)	464, 561
SsiI	CCGC	1 cut(s)	413
SspMI	CTAG	5 cut(s)	57, 243, 260, 308, 500
StyD4I	CCNGG	4 cut(s)	24, 63, 321, 490
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	4 cut(s)	33, 156, 381, 576
TasI	AATT	2 cut(s)	464, 561
TfiI	GAWTC	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	69
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	5 cut(s)	57, 243, 260, 308, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.