Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Forward (+)

48525519 .. 48530899

Gene Structure 5381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003442

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGATAGAGCAGAAACAAGCCCAGCTGATCGATCAATTTGTGAAGCAAGCCTCTACTCTGCAAGGCTCTTCTCTCGTCAGCCTCATAGTCCAACTCACCTCTCACAATTCCCTCTTCGCTTTCTCTGAGATTCTGGCCGTCCCCAATGTCCTCCAGCTTCAAGGAACCGAATATGCTGTATACATTGATATGCTTCGCCTCTTTGCTCATGGTACATGGAGCGATTATAAAAGTAAGCAACTACTCTTCCAAGTTCTGTCCTATGATCAACTCCTTGAGCAACTTGATCTTTCAAATGTACGTGAACTTGAAGACTTTCTTATCAATGAATGCATGTATATGGGCATAATCAAAGGGAAGTTGGATCATTTGAAAAGATCTGTTGAGGTTCAGTTTGCAGCTGGGAGGGATCTGAAACCTGGACAGCTTGGGAATATAATAGAGACCTTAACGGATTGGTTAGCCACTACCGACAATGTACTTCTCACAATTGAGGAGAAGATCAAATGGGCAGATAAGAAGTGTGAGTTGAATGCAACACACCAAAAGGAAGTCAAGGACAGAGTGGAAGAAGTGAAGAAGTCTCTTAGTCACAACAGGTTGCCTCGTGAATACCGTGTTGAAGACTTTATGTTTGGTGAACCAGCTGGATTAATGGACTATGAAGAAGATCGAACCCGAATGAAGAGGAGAAGGTCGCCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

238

Amino Acids

27.58

Weight (kDa)

5.65

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSN7_HB_subdom	PF22061	13 - 43	1.9e-06	CSN7 helical bundle subdomain
CSN7a_helixI	PF18392	144 - 190	8.3e-06	COP9 signalosome complex subunit 7a helix I domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	183
AclWI	GGATC	2 cut(s)	375, 420
AcoI	YGGCCR	1 cut(s)	138
AfaI	GTAC	3 cut(s)	217, 303, 483
AgsI	TTSAA	6 cut(s)	164, 297, 314, 376, 535, 626
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	5 cut(s)	28, 160, 404, 430, 650
AluI	AGCT	5 cut(s)	28, 160, 404, 430, 650
Alw26I	GTCTC	2 cut(s)	440, 591
AlwI	GGATC	2 cut(s)	375, 420
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	401
ArsI	GACNNNNNNTTYG	2 cut(s)	620, 652
AseI	ATTAAT	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	91, 653
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	2 cut(s)	321, 633
BbvI	GCAGC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	423
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	440, 591
BglII	AGATCT	1 cut(s)	380
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	423
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	423
BpiI	GAAGAC	2 cut(s)	321, 633
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	2 cut(s)	512, 706
BseXI	GCAGC	1 cut(s)	413
BseYI	CCCAGC	2 cut(s)	24, 404
BshFI	GGCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	440, 591
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	2 cut(s)	338, 541
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	440
Bsp143I	GATC	9 cut(s)	30, 34, 268, 289, 367, 380, 412, 504, 673
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	121
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	2 cut(s)	375, 420
BspQI	GCTCTTC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	440
BssMI	GATC	9 cut(s)	30, 34, 268, 289, 367, 380, 412, 504, 673
BssNAI	GTATAC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	609
Bst1107I	GTATAC	1 cut(s)	184
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	4 cut(s)	76, 122, 254, 683
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	129, 590
BstKTI	GATC	9 cut(s)	33, 37, 271, 292, 370, 383, 415, 507, 676
BstMAI	GTCTC	2 cut(s)	440, 591
BstMBI	GATC	9 cut(s)	30, 34, 268, 289, 367, 380, 412, 504, 673
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	2 cut(s)	321, 633
BstX2I	RGATCY	2 cut(s)	380, 412
BstYI	RGATCY	2 cut(s)	380, 412
BstZ17I	GTATAC	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	3 cut(s)	216, 302, 482
CviAII	CATG	3 cut(s)	212, 219, 337
CviQI	GTAC	3 cut(s)	216, 302, 482
DdeI	CTNAG	2 cut(s)	129, 590
DpnI	GATC	9 cut(s)	32, 36, 270, 291, 369, 382, 414, 506, 675
DpnII	GATC	9 cut(s)	30, 34, 268, 289, 367, 380, 412, 504, 673
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	4 cut(s)	76, 122, 254, 683
EarI	CTCTTC	4 cut(s)	76, 122, 254, 683
Eco31I	GGTCTC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	421
EcoT22I	ATGCAT	1 cut(s)	338
FaeI	CATG	3 cut(s)	215, 222, 340
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	211, 218, 336
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	402
GsaI	CCCAGC	2 cut(s)	28, 408
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	215, 222, 340
HinfI	GANTC	1 cut(s)	133
HphI	GGTGA	2 cut(s)	91, 653
Hpy166II	GTNNAC	3 cut(s)	184, 308, 644
Hpy188I	TCNGA	2 cut(s)	130, 417
Hpy188III	TCNNGA	1 cut(s)	611
Hpy8I	GTNNAC	3 cut(s)	184, 308, 644
HpyAV	CCTTC	1 cut(s)	690
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	4 cut(s)	64, 336, 401, 539
HpyF3I	CTNAG	2 cut(s)	129, 590
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	3 cut(s)	215, 222, 340
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	9 cut(s)	30, 34, 268, 289, 367, 380, 412, 504, 673
LguI	GCTCTTC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	9 cut(s)	38, 122, 170, 390, 408, 435, 586, 636, 660
Lsp1109I	GCAGC	1 cut(s)	413
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	9 cut(s)	32, 36, 270, 291, 369, 382, 414, 506, 675
MboI	GATC	9 cut(s)	30, 34, 268, 289, 367, 380, 412, 504, 673
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	2 cut(s)	380, 412
MluCI	AATT	3 cut(s)	38, 109, 492
MmeI	TCCRAC	2 cut(s)	118, 345
Mph1103I	ATGCAT	1 cut(s)	338
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	2 cut(s)	452, 656
MslI	CAYNNNNRTG	2 cut(s)	191, 341
MspA1I	CMGCKG	3 cut(s)	28, 404, 650
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	2 cut(s)	338, 541
MvaI	CCWGG	1 cut(s)	423
NdeII	GATC	9 cut(s)	30, 34, 268, 289, 367, 380, 412, 504, 673
NlaIII	CATG	3 cut(s)	215, 222, 340
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	593
NsiI	ATGCAT	1 cut(s)	338
NspI	RCATGY	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	616
PctI	GAATGC	2 cut(s)	338, 541
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	403
Ppu21I	YACGTR	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	656
PsiI	TTATAA	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	421
PspFI	CCCAGC	2 cut(s)	24, 404
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	380, 412
PvuII	CAGCTG	3 cut(s)	28, 404, 650
RsaI	GTAC	3 cut(s)	217, 303, 483
RsaNI	GTAC	3 cut(s)	216, 302, 482
RseI	CAYNNNNRTG	2 cut(s)	191, 341
SapI	GCTCTTC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	452, 656
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	9 cut(s)	30, 34, 268, 289, 367, 380, 412, 504, 673
ScrFI	CCNGG	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	191, 341
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	3 cut(s)	38, 109, 492
StyD4I	CCNGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	620
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	2 cut(s)	33, 676
TasI	AATT	3 cut(s)	38, 109, 492
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	452, 656
Tru9I	TTAA	2 cut(s)	452, 656
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	3 cut(s)	345, 681, 701
TspGWI	ACGGA	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	656
XceI	RCATGY	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	318
Zsp2I	ATGCAT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.