Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001916

Physical Location & Seq

Genomic Coordinates Reverse (-)

39573907 .. 39594606

Gene Structure 20700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG201900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAACCCGAATCTGGAAGTAGCACGAGTAAGGTACAAGACCTCAACTCTAGTCTTCCATTTCATGCTTTTGATTCAGCATCAATATACCGGAGGGCAGACGAATTTCATAAGAAACTAGACTCCATTATGGAGCGGAGAAGAGACGTCTTCGAAAATGAAGGCAGAGAGAGGAAGTCATTTTCTGATTTTGGAGAAGTCTGTTTCAGTCACAAGGAAGATAACCTGCTTGAAGGAACAGAGAATGCTGTGTACCTGGATGTGCTTCGTCTGTTTGCACACGGCACATGGAGTGATTACAAGAGTAATGCCGGTCGTCTTCCACAATTGGTCCCTGATCAAGCACTAAAGCTAAGGCAGTTAACTGTTCTTACACTGGCTGAGACAAACAAGATACTACCATATGATCAGCTAATGCAGGAGTTAGATGTTGCAAATGTACGTGAACTCGAAGATTTTCTCATTAATGAGTGCATGTATGCGGGCATAGTAAGAGGAAAGTTGGACCAGTTAAGAAAATGCTTTGAGGTCCAATTTGCTGCAGGGAGAGATCCGAGACCTGAGCAACTTGGGAGTATGATCCAAACACTATCAAACTGGTTGGTTACGTCAGACAACCTTCTTATCTCAATTCAAGAGAAGATGAGCTGGGCAGATAAAATGACTGAACTGAACAAGCAGCACAAAAAGGAAATTGAAGACAAGGTGGAAGATGTAAAGAGAGCATATTCTATGAAGGCCGACAGTGACTTCCGGGGGCATGAGGAGATCTACTCCGAACCTGGTGGAGTGATGGACTATGAGGAAGACCGAAGTCGACCAAAGAGGAGACGGCATCCGATATATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010387 GO:0016043 GO:0019538 GO:0022607 GO:0034622 GO:0036211 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

283

Amino Acids

32.94

Weight (kDa)

5.43

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	107 - 178	7.2e-07	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02090 AT1G02090 AT1G02090
fragaria_vesca	FvH4_5g19860 FvH4_5g19860 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110 FvH4_7g10110
malus_domestica	MD00G1221600.v1.1 MD02G1211700.v1.1 MD02G1237200.v1.1 MD04G1057800.v1.1 MD07G1106400.v1.1 MD07G1106500.v1.1 MD07G1107100.v1.1
prunus_persica	Prupe.2G129800_v2.0.a1 Prupe.5G061700_v2.0.a1
pyrus_communis	pycom02g17690 pycom04g05130 pycom06g04340 pycom07g09110
rosa_chinensis	RchiOBHm_Chr1g0347681 RchiOBHm_Chr1g0355181 RchiOBHm_Chr7g0204651
rosa_laevigata	RLG00000003442 RLG00000028719
rosa_multiflora	Rmu_co8460557.1_g000001 Rmu_sc0003221.1_g000071 Rmu_sc0003236.1_g000003 Rmu_sc0003918.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252910 Rroxscaffold_4G00307510
rosa_rugosa	Rorug01G0188700 Rorug01G0188800 Rorug01G0188900 Rorug07G0085200
rosa_samantha	Rh1BG172000 Rh1CG191200 Rh1DG201900 Rh7AG215200 Rh7BG212400 Rh7CG228200 Rh7DG222800
rosa_wichuraiana	Rw1G017280 Rw7G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	234
AccBSI	CCGCTC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	817
AciI	CCGC	2 cut(s)	136, 482
AclWI	GGATC	2 cut(s)	545, 574
AcsI	RAATTY	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	3 cut(s)	36, 254, 441
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	233, 635, 698
AjnI	CCWGG	2 cut(s)	255, 781
AluBI	AGCT	3 cut(s)	352, 412, 648
AluI	AGCT	3 cut(s)	352, 412, 648
Alw26I	GTCTC	4 cut(s)	138, 377, 550, 823
AlwI	GGATC	2 cut(s)	545, 574
AoxI	GGCC	1 cut(s)	738
ApeKI	GCWGC	2 cut(s)	539, 679
ApoI	RAATTY	1 cut(s)	104
AseI	ATTAAT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	456
AspS9I	GGNCC	3 cut(s)	331, 505, 529
AsuC2I	CCSGG	1 cut(s)	755
AsuII	TTCGAA	1 cut(s)	153
AvaII	GGWCC	3 cut(s)	331, 505, 529
BauI	CACGAG	1 cut(s)	25
BbsI	GAAGAC	5 cut(s)	47, 142, 311, 705, 813
BbvI	GCAGC	2 cut(s)	526, 691
BccI	CCATC	1 cut(s)	787
BceAI	ACGGC	2 cut(s)	298, 848
BciT130I	CCWGG	2 cut(s)	257, 783
BclI	TGATCA	2 cut(s)	337, 406
BcnI	CCSGG	1 cut(s)	755
BcoDI	GTCTC	4 cut(s)	138, 377, 550, 823
BfaI	CTAG	2 cut(s)	51, 119
BfmI	CTRYAG	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	234
BglII	AGATCT	1 cut(s)	768
BisI	GCNGC	2 cut(s)	540, 680
BlsI	GCNGC	2 cut(s)	541, 681
Bme1390I	CCNGG	3 cut(s)	257, 755, 783
Bme18I	GGWCC	3 cut(s)	331, 505, 529
BmgT120I	GGNCC	3 cut(s)	331, 505, 529
BmiI	GGNNCC	2 cut(s)	6, 333
BmrFI	CCNGG	3 cut(s)	257, 755, 783
BmsI	GCATC	2 cut(s)	89, 844
BoxI	GACNNNNGTC	1 cut(s)	813
BpiI	GAAGAC	5 cut(s)	47, 142, 311, 705, 813
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
Bpu10I	CCTNAGC	2 cut(s)	353, 561
Bpu14I	TTCGAA	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	755
BsaAI	YACGTR	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	754
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	3 cut(s)	381, 508, 602
BseBI	CCWGG	2 cut(s)	257, 783
BseDI	CCNNGG	1 cut(s)	754
BseGI	GGATG	2 cut(s)	265, 835
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	372, 552
BseNI	ACTGG	3 cut(s)	381, 508, 602
BseRI	GAGGAG	2 cut(s)	779, 841
BseXI	GCAGC	2 cut(s)	526, 691
BseYI	CCCAGC	1 cut(s)	648
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	740
BsiEI	CGRYCG	1 cut(s)	316
BsiSI	CCGG	3 cut(s)	91, 312, 754
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	4 cut(s)	138, 377, 550, 823
BsmBI	CGTCTC	2 cut(s)	138, 823
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	740
Bso31I	GGTCTC	1 cut(s)	550
Bsp119I	TTCGAA	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	337, 406, 550, 579, 768
BspACI	CCGC	2 cut(s)	136, 482
BspANI	GGCC	1 cut(s)	740
BspCNI	CTCAG	2 cut(s)	373, 553
BspLI	GGNNCC	2 cut(s)	6, 333
BspMAI	CTGCAG	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	545, 574
BspT104I	TTCGAA	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	550
BsrBI	CCGCTC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	3 cut(s)	381, 508, 602
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	754
BssMI	GATC	5 cut(s)	337, 406, 550, 579, 768
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	25
Bst2UI	CCWGG	2 cut(s)	257, 783
Bst4CI	ACNGT	2 cut(s)	367, 746
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	3 cut(s)	353, 381, 561
BstF5I	GGATG	2 cut(s)	265, 835
BstKTI	GATC	5 cut(s)	340, 409, 553, 582, 771
BstMAI	GTCTC	4 cut(s)	138, 377, 550, 823
BstMBI	GATC	5 cut(s)	337, 406, 550, 579, 768
BstMCI	CGRYCG	1 cut(s)	316
BstNI	CCWGG	2 cut(s)	257, 783
BstNSI	RCATGY	1 cut(s)	478
BstPAI	GACNNNNGTC	1 cut(s)	813
BstSCI	CCNGG	3 cut(s)	255, 753, 781
BstSFI	CTRYAG	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	526, 691
BstV2I	GAAGAC	5 cut(s)	47, 142, 311, 705, 813
BstX2I	RGATCY	2 cut(s)	550, 768
BstYI	RGATCY	2 cut(s)	550, 768
BsuRI	GGCC	1 cut(s)	740
BtsCI	GGATG	2 cut(s)	265, 835
BtsIMutI	CAGTG	2 cut(s)	374, 751
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	331, 505, 529
CsiI	ACCWGGT	1 cut(s)	781
Csp6I	GTAC	3 cut(s)	35, 253, 440
CviAII	CATG	4 cut(s)	65, 288, 475, 761
CviJI	RGCY	5 cut(s)	352, 380, 412, 648, 740
CviKI_1	RGCY	5 cut(s)	352, 380, 412, 648, 740
CviQI	GTAC	3 cut(s)	35, 253, 440
DdeI	CTNAG	3 cut(s)	353, 381, 561
DpnI	GATC	5 cut(s)	339, 408, 552, 581, 770
DpnII	GATC	5 cut(s)	337, 406, 550, 579, 768
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	550
Eco47I	GGWCC	3 cut(s)	331, 505, 529
EcoRII	CCWGG	2 cut(s)	255, 781
Esp3I	CGTCTC	2 cut(s)	138, 823
FaeI	CATG	4 cut(s)	68, 291, 478, 764
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	4 cut(s)	64, 287, 474, 760
FauI	CCCGC	1 cut(s)	475
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	2 cut(s)	337, 406
FblI	GTMKAC	1 cut(s)	817
Fnu4HI	GCNGC	2 cut(s)	540, 680
FokI	GGATG	2 cut(s)	272, 822
Fsp4HI	GCNGC	2 cut(s)	540, 680
FspBI	CTAG	2 cut(s)	51, 119
GluI	GCNGC	2 cut(s)	540, 680
GsaI	CCCAGC	1 cut(s)	652
HaeIII	GGCC	1 cut(s)	740
HapII	CCGG	3 cut(s)	91, 312, 754
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	68, 291, 478, 764
HincII	GTYRAC	2 cut(s)	363, 818
HindII	GTYRAC	2 cut(s)	363, 818
HinfI	GANTC	3 cut(s)	11, 74, 122
HpaI	GTTAAC	1 cut(s)	363
HpaII	CCGG	3 cut(s)	91, 312, 754
Hpy166II	GTNNAC	4 cut(s)	253, 363, 446, 818
Hpy188I	TCNGA	5 cut(s)	187, 555, 613, 778, 840
Hpy188III	TCNNGA	2 cut(s)	15, 635
Hpy8I	GTNNAC	4 cut(s)	253, 363, 446, 818
HpyAV	CCTTC	4 cut(s)	155, 227, 629, 730
HpyCH4III	ACNGT	2 cut(s)	367, 746
HpyCH4IV	ACGT	3 cut(s)	147, 442, 608
HpyCH4V	TGCA	5 cut(s)	278, 418, 434, 474, 542
HpyF3I	CTNAG	3 cut(s)	353, 381, 561
HpySE526I	ACGT	3 cut(s)	147, 442, 608
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	68, 291, 478, 764
Ksp22I	TGATCA	2 cut(s)	337, 406
KspAI	GTTAAC	1 cut(s)	363
Kzo9I	GATC	5 cut(s)	337, 406, 550, 579, 768
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	2 cut(s)	526, 691
LweI	GCATC	2 cut(s)	89, 844
MabI	ACCWGGT	1 cut(s)	781
MaeI	CTAG	2 cut(s)	51, 119
MaeII	ACGT	3 cut(s)	147, 442, 608
MaeIII	GTNAC	3 cut(s)	209, 604, 746
MalI	GATC	5 cut(s)	339, 408, 552, 581, 770
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	5 cut(s)	337, 406, 550, 579, 768
MfeI	CAATTG	1 cut(s)	326
MflI	RGATCY	2 cut(s)	550, 768
MluCI	AATT	5 cut(s)	104, 326, 533, 630, 693
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	8 cut(s)	53, 87, 165, 488, 520, 757, 796, 819
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	3 cut(s)	362, 465, 512
MspI	CCGG	3 cut(s)	91, 312, 754
MspR9I	CCNGG	3 cut(s)	257, 755, 783
MunI	CAATTG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	2 cut(s)	257, 783
NciI	CCSGG	1 cut(s)	755
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	5 cut(s)	337, 406, 550, 579, 768
NlaIII	CATG	4 cut(s)	68, 291, 478, 764
NlaIV	GGNNCC	2 cut(s)	6, 333
NmuCI	GTSAC	2 cut(s)	209, 746
NspI	RCATGY	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	153
PctI	GAATGC	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	11, 74
PkrI	GCNGC	2 cut(s)	541, 681
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	443
PshAI	GACNNNNGTC	1 cut(s)	813
PshBI	ATTAAT	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	255, 781
PspFI	CCCAGC	1 cut(s)	648
PspGI	CCWGG	2 cut(s)	255, 781
PspN4I	GGNNCC	2 cut(s)	6, 333
PspPI	GGNCC	3 cut(s)	331, 505, 529
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	2 cut(s)	550, 768
RsaI	GTAC	3 cut(s)	36, 254, 441
RsaNI	GTAC	3 cut(s)	35, 253, 440
SalI	GTCGAC	1 cut(s)	816
SaqAI	TTAA	3 cut(s)	362, 465, 512
SatI	GCNGC	2 cut(s)	540, 680
Sau3AI	GATC	5 cut(s)	337, 406, 550, 579, 768
Sau96I	GGNCC	3 cut(s)	331, 505, 529
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	3 cut(s)	257, 755, 783
SexAI	ACCWGGT	1 cut(s)	781
SfaNI	GCATC	2 cut(s)	89, 844
SfcI	CTRYAG	1 cut(s)	540
SfuI	TTCGAA	1 cut(s)	153
SinI	GGWCC	3 cut(s)	331, 505, 529
Sse9I	AATT	5 cut(s)	104, 326, 533, 630, 693
SsiI	CCGC	2 cut(s)	136, 482
SspMI	CTAG	2 cut(s)	51, 119
StyD4I	CCNGG	3 cut(s)	255, 753, 781
TaaI	ACNGT	2 cut(s)	367, 746
TaiI	ACGT	3 cut(s)	150, 445, 611
TaqI	TCGA	3 cut(s)	153, 450, 817
TaqII	GACCGA	1 cut(s)	825
TasI	AATT	5 cut(s)	104, 326, 533, 630, 693
TfiI	GAWTC	2 cut(s)	11, 74
Tru1I	TTAA	3 cut(s)	362, 465, 512
Tru9I	TTAA	3 cut(s)	362, 465, 512
TscAI	CASTG	2 cut(s)	381, 751
TseFI	GTSAC	2 cut(s)	209, 746
TseI	GCWGC	2 cut(s)	539, 679
Tsp45I	GTSAC	2 cut(s)	209, 746
TspDTI	ATGAA	4 cut(s)	53, 98, 174, 749
TspRI	CASTG	2 cut(s)	381, 751
VpaK11BI	GGWCC	3 cut(s)	331, 505, 529
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	817
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	2 cut(s)	51, 119
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.