Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001997

Physical Location & Seq

Genomic Coordinates Reverse (-)

979307 .. 982002

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAGTTTCAACAAAGTTCCCAACATTCCTGGAGCTCCTGCTCTCTCTGCCCTTCTTAAGGTCAGCGTTATTGGTGGGCTCGGTGTCTATGCCCTTACTAATAGTCTCTACAATGTCGATGGAGGACACCGTGCTGTCATGTTCAACCGATTAACTGGTATCAAGGAAAAGGTGTACCCAGAAGGCACACATTTTATGGTGCCATGGTTTGAAAGGCCAATCATCTATGACGTTCGTGCACGACCTTACCTTGTAGAGAGCACCACTGGTAGTCATGATCTTCAGATGGTGAAAATTGGATTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCTCAGATTTACCGAACCCTTGGCGAGAACTACAGCGAAAGGGTTCTTCCTTCCATCATCCATGAAACCCTAAAAGCAGTGGTAGCTCAGTACAATGCAAGCCAGCTCATTACCCAGAGAGAAGCTGTGAGCAGAGAGATACGCAAGATTCTGACAGAGCGGGCTTCTAACTTTGACATTGCTCTTGATGATGTCTCCATCACGACTCTGACATTCGGCAAAGAGTTCACCGCAGCTATCGAGGCAAAACAAGTTGCTGCTCAGGAAGCTGAACGGGCTAAGTTCATTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAGGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAGGCATTCATCACTCTGAGAAAGATTGAAGCTGCGAGAGAGATTGCACAGACCATTGCACAATCTGCTAACAAGGTTTACCTGAGCTCCAACGATCTGTTGCTTAACCTTCAAGAAATGAACTTGGAGCCTAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019866 GO:0030054 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0055044 GO:0070469 GO:0071944 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

286

Amino Acids

31.81

Weight (kDa)

9.39

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	38 - 213	1.2e-32	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03860 AT1G03860 AT1G03860 AT2G20530 AT2G20530 AT4G28510 AT5G44140
fragaria_vesca	FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_6g26770 FvH4_6g26770
malus_domestica	MD03G1195500.v1.1 MD05G1030500.v1.1 MD11G1212000.v1.1
prunus_persica	Prupe.3G128200_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1
pyrus_communis	pycom05g02170 pycom10g02030 pycom11g18700
rosa_chinensis	RchiOBHm_Chr0c19g0500161 RchiOBHm_Chr2g0128531 RchiOBHm_Chr5g0041011
rosa_laevigata	RLG00000018992 RLG00000034020
rosa_multiflora	Rmu_sc0005650.1_g000009 Rmu_sc0010062.1_g000004 Rmu_sc0033659.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039690 Rroxscaffold_2G00115640 Rroxscaffold_2G00116110
rosa_rugosa	Rorug02G0278000 Rorug05G0189500 Rorug05G0189600
rosa_samantha	Rh2AG329600 Rh2CG316400 Rh2DG355900 Rh5BG280000 Rh5CG312100 Rh5DG288000
rosa_wichuraiana	Rw2G026720 Rw5G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	669
AccB1I	GGYRCC	1 cut(s)	199
AccBSI	CCGCTC	1 cut(s)	496
AciI	CCGC	3 cut(s)	496, 567, 656
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	2 cut(s)	176, 428
AfiI	CCNNNNNNNGG	2 cut(s)	58, 670
AflII	CTTAAG	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	5 cut(s)	10, 145, 212, 749, 833
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	28
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
Alw21I	GWGCWC	5 cut(s)	37, 241, 263, 691, 809
Alw26I	GTCTC	2 cut(s)	110, 535
Alw44I	GTGCAC	1 cut(s)	237
AoxI	GGCC	1 cut(s)	215
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	569, 593, 752
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	670
AsuHPI	GGTGA	3 cut(s)	301, 338, 556
BaeGI	GKGCMC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	3 cut(s)	37, 81, 809
Bbv12I	GWGCWC	5 cut(s)	37, 241, 263, 691, 809
BbvI	GCAGC	3 cut(s)	580, 581, 739
BccI	CCATC	4 cut(s)	113, 280, 398, 542
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	110, 535
BfmI	CTRYAG	1 cut(s)	367
BfrI	CTTAAG	1 cut(s)	56
BisI	GCNGC	3 cut(s)	570, 594, 753
BlpI	GCTNAGC	1 cut(s)	690
BlsI	GCNGC	3 cut(s)	571, 595, 754
Bme1390I	CCNGG	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	317
BmiI	GGNNCC	2 cut(s)	201, 849
BmrFI	CCNGG	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	51
Bpu10I	CCTNAGC	2 cut(s)	597, 803
Bpu1102I	GCTNAGC	1 cut(s)	690
BsaJI	CCNNGG	3 cut(s)	203, 321, 355
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 670
Bse1I	ACTGG	2 cut(s)	160, 271
Bse3DI	GCAATG	2 cut(s)	513, 774
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	203, 321, 355
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	58, 670
BseMI	GCAATG	2 cut(s)	513, 774
BseMII	CTCAG	6 cut(s)	353, 437, 611, 704, 728, 794
BseNI	ACTGG	2 cut(s)	160, 271
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	580, 581, 739
BshFI	GGCC	1 cut(s)	217
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	5 cut(s)	37, 241, 263, 691, 809
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	58, 670
BsmAI	GTCTC	2 cut(s)	110, 535
BsmFI	GGGAC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	725
BsnI	GGCC	1 cut(s)	217
Bsp1286I	GDGCHC	6 cut(s)	37, 81, 241, 263, 691, 809
Bsp143I	GATC	2 cut(s)	277, 814
Bsp1720I	GCTNAGC	1 cut(s)	690
Bsp19I	CCATGG	2 cut(s)	203, 321
BspACI	CCGC	3 cut(s)	496, 567, 656
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	6 cut(s)	352, 436, 610, 703, 729, 795
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	201, 849
BspT107I	GGYRCC	1 cut(s)	199
BspTI	CTTAAG	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	496
BsrDI	GCAATG	2 cut(s)	513, 774
BsrI	ACTGG	2 cut(s)	160, 271
BssECI	CCNNGG	3 cut(s)	203, 321, 355
BssMI	GATC	2 cut(s)	277, 814
BssT1I	CCWWGG	3 cut(s)	203, 321, 355
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	131, 332
BstAFI	CTTAAG	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstC8I	GCNNGC	3 cut(s)	436, 440, 498
BstDEI	CTNAG	8 cut(s)	339, 423, 597, 615, 690, 737, 803, 852
BstDSI	CCRYGG	2 cut(s)	203, 321
BstEII	GGTNACC	1 cut(s)	326
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	2 cut(s)	280, 817
BstMAI	GTCTC	2 cut(s)	110, 535
BstMBI	GATC	2 cut(s)	277, 814
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 419, 578, 602, 611, 686, 785
BstNI	CCWGG	1 cut(s)	30
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	241
BstV1I	GCAGC	3 cut(s)	580, 581, 739
BsuRI	GGCC	1 cut(s)	217
BtgI	CCRYGG	2 cut(s)	203, 321
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	393
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	264, 420
Cac8I	GCNNGC	3 cut(s)	436, 440, 498
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	1 cut(s)	670
Csp6I	GTAC	2 cut(s)	175, 427
CviAII	CATG	5 cut(s)	139, 204, 275, 322, 398
CviQI	GTAC	2 cut(s)	175, 427
DdeI	CTNAG	8 cut(s)	339, 423, 597, 615, 690, 737, 803, 852
DpnI	GATC	2 cut(s)	279, 816
DpnII	GATC	2 cut(s)	277, 814
Ecl136II	GAGCTC	2 cut(s)	35, 807
Eco130I	CCWWGG	3 cut(s)	203, 321, 355
Eco24I	GRGCYC	3 cut(s)	37, 81, 809
Eco53kI	GAGCTC	2 cut(s)	35, 807
Eco57I	CTGAAG	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	326
EcoICRI	GAGCTC	2 cut(s)	35, 807
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoO65I	GGTNACC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	3 cut(s)	203, 321, 355
EcoT38I	GRGCYC	3 cut(s)	37, 81, 809
ErhI	CCWWGG	3 cut(s)	203, 321, 355
FaeI	CATG	5 cut(s)	142, 207, 278, 325, 401
FaiI	YATR	8 cut(s)	90, 140, 197, 205, 228, 276, 323, 399
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	5 cut(s)	138, 203, 274, 321, 397
FauI	CCCGC	1 cut(s)	489
Fnu4HI	GCNGC	3 cut(s)	570, 594, 753
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	3 cut(s)	37, 81, 809
Fsp4HI	GCNGC	3 cut(s)	570, 594, 753
FspI	TGCGCA	1 cut(s)	669
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	3 cut(s)	570, 594, 753
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	5 cut(s)	142, 207, 278, 325, 401
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HinfI	GANTC	2 cut(s)	484, 541
HphI	GGTGA	3 cut(s)	301, 338, 556
Hpy166II	GTNNAC	4 cut(s)	175, 239, 564, 799
Hpy188I	TCNGA	6 cut(s)	285, 342, 489, 546, 701, 738
Hpy188III	TCNNGA	5 cut(s)	275, 521, 538, 599, 833
Hpy8I	GTNNAC	4 cut(s)	175, 239, 564, 799
HpyAV	CCTTC	4 cut(s)	62, 176, 396, 839
HpyCH4III	ACNGT	2 cut(s)	131, 332
HpyCH4IV	ACGT	2 cut(s)	231, 316
HpyCH4V	TGCA	4 cut(s)	239, 434, 767, 779
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 419, 578, 602, 611, 686, 785
HpyF3I	CTNAG	8 cut(s)	339, 423, 597, 615, 690, 737, 803, 852
HpySE526I	ACGT	2 cut(s)	231, 316
Hsp92II	CATG	5 cut(s)	142, 207, 278, 325, 401
HspAI	GCGC	1 cut(s)	668
Kzo9I	GATC	2 cut(s)	277, 814
LmnI	GCTCC	4 cut(s)	32, 40, 812, 847
Lsp1109I	GCAGC	3 cut(s)	580, 581, 739
MaeII	ACGT	2 cut(s)	231, 316
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	279, 816
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	2 cut(s)	277, 814
MboII	GAAGA	2 cut(s)	272, 374
MfeI	CAATTG	1 cut(s)	708
MhlI	GDGCHC	6 cut(s)	37, 81, 241, 263, 691, 809
MluCI	AATT	2 cut(s)	294, 708
MlyI	GAGTC	1 cut(s)	535
MmeI	TCCRAC	1 cut(s)	834
MnlI	CCTC	3 cut(s)	116, 348, 571
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	4 cut(s)	57, 152, 302, 825
MspCI	CTTAAG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	30
MunI	CAATTG	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	725
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	7 cut(s)	47, 419, 578, 602, 611, 686, 785
NcoI	CCATGG	2 cut(s)	203, 321
NdeII	GATC	2 cut(s)	277, 814
NlaIII	CATG	5 cut(s)	142, 207, 278, 325, 401
NlaIV	GGNNCC	2 cut(s)	201, 849
NmuCI	GTSAC	1 cut(s)	326
NsbI	TGCGCA	1 cut(s)	669
PagI	TCATGA	1 cut(s)	274
PctI	GAATGC	1 cut(s)	725
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	484
PfoI	TCCNGGA	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	571, 595, 754
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Psp124BI	GAGCTC	2 cut(s)	37, 809
Psp6I	CCWGG	1 cut(s)	28
PspEI	GGTNACC	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	201, 849
RsaI	GTAC	2 cut(s)	176, 428
RsaNI	GTAC	2 cut(s)	175, 427
SacI	GAGCTC	2 cut(s)	37, 809
SaqAI	TTAA	4 cut(s)	57, 152, 302, 825
SatI	GCNGC	3 cut(s)	570, 594, 753
Sau3AI	GATC	2 cut(s)	277, 814
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	6 cut(s)	37, 81, 241, 263, 691, 809
SfcI	CTRYAG	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	2 cut(s)	294, 708
SsiI	CCGC	3 cut(s)	496, 567, 656
SstI	GAGCTC	2 cut(s)	37, 809
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	3 cut(s)	203, 321, 355
TaaI	ACNGT	2 cut(s)	131, 332
TaiI	ACGT	2 cut(s)	234, 319
TaqI	TCGA	2 cut(s)	117, 576
TasI	AATT	2 cut(s)	294, 708
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	4 cut(s)	57, 152, 302, 825
Tru9I	TTAA	4 cut(s)	57, 152, 302, 825
TscAI	CASTG	2 cut(s)	271, 420
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	3 cut(s)	569, 593, 752
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	4 cut(s)	414, 610, 718, 854
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	2 cut(s)	271, 420
Vha464I	CTTAAG	1 cut(s)	56
VneI	GTGCAC	1 cut(s)	237
XagI	CCTNNNNNAGG	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.