Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001997

Physical Location & Seq

Genomic Coordinates Reverse (-)

20879265 .. 20882516

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g18700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAAAGTCCCCAAACTTCCTGGAGCTCGTGGCATTGCTGCTTTGCTTACGGTGGGAGTTGTTGGTAGTCTTGGTGTATATGGACTTAACAATAGTCTCTACAATGTCGATGGAGGGCATAGGTCCATTGTGTTCAGTCGTCTTGTTGGTGTCAAAGACAAGGTTTATCCTGAAGGGACACACCTTATAATTCCATGGTTTGAAAGGCCGGTCATCTATGATGTTCGTGCAAAACCTTATGTAGTGGAGAGTAAAGCTGGAAGCCGTGACCTCCAGATGGTATTAGTAGGTCTTCGAGTGCTAACCCGTCCCGTGCCAGACGAATTACCTACAGTTTATCGAACTCTGGGTGAGAATTATGTTGAGAGGGTCATGCCTTCAATTATCCATGAAACTTTGAAAGCTGTAGTTGCACAGTATAATGCCAGCCAACTTATTACTCAGAGAGAGGCCGTCAGTAGGGAGATACGGAAAATTTTGACAGAGAGGGCAGCAAATTTTAACATTGCACTGGATGATGTGTCTATCACTAACCTGACTTTTGGAAAGGAGTTTCTGACTGCAATTGAAGCAAAACAGGTAGCTGCACAAGAGGCTGAGAGGGCAAAATTTGTTGTGGAGAAAGCCGAACAAGACAAGAAAAGTGCTGTTATCAGAGCAGAGGGTGAAGCAACAAGTGCGAAGCTGATTGGTCAAGCCATTGCCAACAATCCAGCATTTATCACTCTACGGAAGATTGAGGCTGCAAGAGAAATCGCGCAGGTTATCTCAGATTCCAAAAACAAGGTTTACTTGAACGCCGATGAACTTTTGCTGAACATTCAGGGGAATGTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

280

Amino Acids

30.69

Weight (kDa)

9.24

Isoelectric Point (pI)

29.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03860 AT1G03860 AT1G03860 AT2G20530 AT2G20530 AT4G28510 AT5G44140
fragaria_vesca	FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_6g26770 FvH4_6g26770
malus_domestica	MD03G1195500.v1.1 MD05G1030500.v1.1 MD11G1212000.v1.1
prunus_persica	Prupe.3G128200_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1
pyrus_communis	pycom05g02170 pycom10g02030 pycom11g18700
rosa_chinensis	RchiOBHm_Chr0c19g0500161 RchiOBHm_Chr2g0128531 RchiOBHm_Chr5g0041011
rosa_laevigata	RLG00000018992 RLG00000034020
rosa_multiflora	Rmu_sc0005650.1_g000009 Rmu_sc0010062.1_g000004 Rmu_sc0033659.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039690 Rroxscaffold_2G00115640 Rroxscaffold_2G00116110
rosa_rugosa	Rorug02G0278000 Rorug05G0189500 Rorug05G0189600
rosa_samantha	Rh2AG329600 Rh2CG316400 Rh2DG355900 Rh5BG280000 Rh5CG312100 Rh5DG288000
rosa_wichuraiana	Rw2G026720 Rw5G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	751
AccII	CGCG	1 cut(s)	758
AcsI	RAATTY	3 cut(s)	474, 496, 608
AcuI	CTGAAG	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	277, 459
AgsI	TTSAA	5 cut(s)	203, 381, 400, 569, 796
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	5 cut(s)	26, 257, 404, 584, 685
AluI	AGCT	5 cut(s)	26, 257, 404, 584, 685
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	101
AoxI	GGCC	2 cut(s)	206, 450
ApeKI	GCWGC	4 cut(s)	38, 491, 584, 743
ApoI	RAATTY	3 cut(s)	474, 496, 608
AspLEI	GCGC	1 cut(s)	760
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	362, 677
AvaII	GGWCC	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	4 cut(s)	25, 503, 571, 730
BccI	CCATC	2 cut(s)	104, 271
BceAI	ACGGC	2 cut(s)	249, 437
BciT130I	CCWGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	101
BfmI	CTRYAG	2 cut(s)	330, 405
BfuAI	ACCTGC	1 cut(s)	751
BisI	GCNGC	4 cut(s)	39, 492, 585, 744
BlsI	GCNGC	4 cut(s)	40, 493, 586, 745
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	2 cut(s)	42, 257
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 459
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	3 cut(s)	33, 504, 699
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	2 cut(s)	277, 459
BseMI	GCAATG	3 cut(s)	33, 504, 699
BseMII	CTCAG	3 cut(s)	455, 588, 783
BseNI	ACTGG	1 cut(s)	516
BseXI	GCAGC	4 cut(s)	25, 503, 571, 730
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	758
BshFI	GGCC	2 cut(s)	208, 452
BsiHKAI	GWGCWC	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	2 cut(s)	190, 294
BslI	CCNNNNNNNGG	2 cut(s)	277, 459
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	190, 294
BsnI	GGCC	2 cut(s)	208, 452
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp19I	CCATGG	1 cut(s)	194
BspANI	GGCC	2 cut(s)	208, 452
BspCNI	CTCAG	3 cut(s)	454, 589, 782
BspFNI	CGCG	1 cut(s)	758
BspMI	ACCTGC	1 cut(s)	751
BsrDI	GCAATG	3 cut(s)	33, 504, 699
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	194
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	194
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	52, 334, 417
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	3 cut(s)	441, 597, 769
BstDSI	CCRYGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	520
BstFNI	CGCG	1 cut(s)	758
BstHHI	GCGC	1 cut(s)	760
BstMAI	GTCTC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	5 cut(s)	410, 569, 593, 602, 677
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstSFI	CTRYAG	2 cut(s)	330, 405
BstUI	CGCG	1 cut(s)	758
BstV1I	GCAGC	4 cut(s)	25, 503, 571, 730
BstV2I	GAAGAC	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	208, 452
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	509
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	1 cut(s)	427
CfoI	GCGC	1 cut(s)	760
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	123
CviAII	CATG	3 cut(s)	195, 373, 389
DdeI	CTNAG	3 cut(s)	441, 597, 769
Ecl136II	GAGCTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	3 cut(s)	198, 376, 392
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FaqI	GGGAC	2 cut(s)	190, 294
FatI	CATG	3 cut(s)	194, 372, 388
Fnu4HI	GCNGC	4 cut(s)	39, 492, 585, 744
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	4 cut(s)	39, 492, 585, 744
GlaI	GCGC	1 cut(s)	759
GluI	GCNGC	4 cut(s)	39, 492, 585, 744
GsuI	CTGGAG	2 cut(s)	42, 257
HaeIII	GGCC	2 cut(s)	208, 452
HapII	CCGG	1 cut(s)	209
HhaI	GCGC	1 cut(s)	760
Hin1II	CATG	3 cut(s)	198, 376, 392
Hin6I	GCGC	1 cut(s)	758
HinP1I	GCGC	1 cut(s)	758
HinfI	GANTC	1 cut(s)	773
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	362, 677
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	4 cut(s)	444, 558, 656, 772
Hpy188III	TCNNGA	2 cut(s)	170, 274
Hpy8I	GTNNAC	1 cut(s)	790
HpyAV	CCTTC	2 cut(s)	167, 387
HpyCH4III	ACNGT	3 cut(s)	52, 334, 417
HpyCH4V	TGCA	7 cut(s)	230, 413, 509, 563, 587, 746, 835
HpyF10VI	GCNNNNNNNGC	5 cut(s)	410, 569, 593, 602, 677
HpyF3I	CTNAG	3 cut(s)	441, 597, 769
Hsp92II	CATG	3 cut(s)	198, 376, 392
HspAI	GCGC	1 cut(s)	758
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	4 cut(s)	25, 503, 571, 730
MaeIII	GTNAC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	284, 745
MfeI	CAATTG	1 cut(s)	564
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	8 cut(s)	189, 323, 355, 381, 474, 496, 564, 608
MnlI	CCTC	9 cut(s)	107, 281, 360, 442, 480, 586, 594, 655, 733
MseI	TTAA	2 cut(s)	87, 501
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	21
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	21
MvnI	CGCG	1 cut(s)	758
MwoI	GCNNNNNNNGC	5 cut(s)	410, 569, 593, 602, 677
NcoI	CCATGG	1 cut(s)	194
NlaIII	CATG	3 cut(s)	198, 376, 392
NmuCI	GTSAC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	773
PfoI	TCCNGGA	1 cut(s)	19
PkrI	GCNGC	4 cut(s)	40, 493, 586, 745
PsiI	TTATAA	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	87, 501
SatI	GCNGC	4 cut(s)	39, 492, 585, 744
Sau96I	GGNCC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	330, 405
SinI	GGWCC	1 cut(s)	123
Sse9I	AATT	8 cut(s)	189, 323, 355, 381, 474, 496, 564, 608
SstI	GAGCTC	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	3 cut(s)	52, 334, 417
TaqI	TCGA	3 cut(s)	108, 295, 340
TasI	AATT	8 cut(s)	189, 323, 355, 381, 474, 496, 564, 608
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	2 cut(s)	87, 501
Tru9I	TTAA	2 cut(s)	87, 501
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	4 cut(s)	38, 491, 584, 743
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	17, 405, 819
TspGWI	ACGGA	2 cut(s)	484, 745
TspRI	CASTG	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	3 cut(s)	474, 496, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.