Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005650.1

Orthogroup ID

OG0001997

Physical Location & Seq

Genomic Coordinates Reverse (-)

60040 .. 63281

Gene Structure 3242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005650.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgaatttcaacaagaatatgaaagttccgaaagtgccagttcgcgggattggtactttgcttactgtgggagttattggtggtcttggtgtttatggacttaacaatggtctatacaatgttgaaggagggagccgggctattgtgttcaaccgcattactggtgtcaaagacaaggtctatccggaagggacacacctaataattccatggtttgagaggccaatcatctatgatgtccgcgcacgaccccattttgtggacagcattgctggaagccgtgacctccagatggtgaaaatagggcttcgagttctggtccgtcctgtgcctgaccaattacctacaatttatcgtactttaggtgtggattatcttgacaggatcatgaagtcaatcattcatgaaactttgaaagctgtagttgcacaatataatgctagccaactgattactcagagagagactgttagtagggaaattcggaagattttgacagagagggcagccaagttcaatattgcaatggatgatgtatctattaccagcctgacttttgggaaggagtttatgattgcaattgaagcgaaacaagtagctgctcaagaagctgagagggccaagtatgttgtggagaaagctgaacaagacaagaaaagtgctattatcagagccgagggtgaagcaaaaagtgcccagcttataggtgaagccactgccaagaacccagcatttgtcactctaaggaagattgaagctggaagagaaattgcacaaatcatctccaattcagataataaagtttatcttaactccgatagtctgttgctcaaccttcaggagttgaatttgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

285

Amino Acids

31.66

Weight (kDa)

9.5

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03860 AT1G03860 AT1G03860 AT2G20530 AT2G20530 AT4G28510 AT5G44140
fragaria_vesca	FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_6g26770 FvH4_6g26770
malus_domestica	MD03G1195500.v1.1 MD05G1030500.v1.1 MD11G1212000.v1.1
prunus_persica	Prupe.3G128200_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1
pyrus_communis	pycom05g02170 pycom10g02030 pycom11g18700
rosa_chinensis	RchiOBHm_Chr0c19g0500161 RchiOBHm_Chr2g0128531 RchiOBHm_Chr5g0041011
rosa_laevigata	RLG00000018992 RLG00000034020
rosa_multiflora	Rmu_sc0005650.1_g000009 Rmu_sc0010062.1_g000004 Rmu_sc0033659.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039690 Rroxscaffold_2G00115640 Rroxscaffold_2G00116110
rosa_rugosa	Rorug02G0278000 Rorug05G0189500 Rorug05G0189600
rosa_samantha	Rh2AG329600 Rh2CG316400 Rh2DG355900 Rh5BG280000 Rh5CG312100 Rh5DG288000
rosa_wichuraiana	Rw2G026720 Rw5G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccII	CGCG	2 cut(s)	45, 243
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	3 cut(s)	45, 154, 241
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	3 cut(s)	4, 480, 847
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	2 cut(s)	55, 358
AfiI	CCNNNNNNNGG	3 cut(s)	44, 259, 292
AgsI	TTSAA	8 cut(s)	10, 125, 151, 415, 517, 584, 755, 847
AluBI	AGCT	6 cut(s)	419, 599, 611, 641, 700, 758
AluI	AGCT	6 cut(s)	419, 599, 611, 641, 700, 758
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	1 cut(s)	392
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	221, 618
ApeKI	GCWGC	2 cut(s)	506, 599
ApoI	RAATTY	3 cut(s)	4, 480, 847
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	2 cut(s)	319, 618
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	307, 692, 719
AsuNHI	GCTAGC	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	697
BbvI	GCAGC	2 cut(s)	518, 586
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	420
BisI	GCNGC	2 cut(s)	507, 600
BlsI	GCNGC	2 cut(s)	508, 601
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	319, 618
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	137
BmtI	GCTAGC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	588
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	209, 675
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 259, 292
Bse1I	ACTGG	2 cut(s)	38, 166
Bse3DI	GCAATG	2 cut(s)	267, 531
BseAI	TCCGGA	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	209, 675
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	3 cut(s)	44, 259, 292
BseMI	GCAATG	2 cut(s)	267, 531
BseMII	CTCAG	2 cut(s)	470, 603
BseNI	ACTGG	2 cut(s)	38, 166
BseSI	GKGCMC	1 cut(s)	697
BseXI	GCAGC	2 cut(s)	518, 586
BseYI	CCCAGC	2 cut(s)	696, 727
Bsh1236I	CGCG	2 cut(s)	45, 243
BshFI	GGCC	2 cut(s)	223, 620
BsiSI	CCGG	2 cut(s)	136, 185
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	3 cut(s)	44, 259, 292
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	223, 620
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	3 cut(s)	45, 154, 241
BspANI	GGCC	2 cut(s)	223, 620
BspCNI	CTCAG	2 cut(s)	469, 604
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	2 cut(s)	45, 243
BspHI	TCATGA	2 cut(s)	387, 403
BspLI	GGNNCC	1 cut(s)	134
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	267, 531
BsrI	ACTGG	2 cut(s)	38, 166
BssECI	CCNNGG	2 cut(s)	209, 675
BssMI	GATC	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	67, 469
Bst6I	CTCTTC	1 cut(s)	757
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	3 cut(s)	456, 612, 743
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	2 cut(s)	45, 243
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	5 cut(s)	425, 584, 608, 617, 692
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	697
BstUI	CGCG	2 cut(s)	45, 243
BstV1I	GCAGC	2 cut(s)	518, 586
BsuRI	GGCC	2 cut(s)	223, 620
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	535
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	1 cut(s)	714
Cac8I	GCNNGC	1 cut(s)	442
CciI	TCATGA	2 cut(s)	387, 403
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	319, 618
Csp6I	GTAC	2 cut(s)	54, 357
CviAII	CATG	3 cut(s)	210, 388, 404
CviQI	GTAC	2 cut(s)	54, 357
DdeI	CTNAG	3 cut(s)	456, 612, 743
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	757
EarI	CTCTTC	1 cut(s)	757
Eco130I	CCWWGG	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	821
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	3 cut(s)	213, 391, 407
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	3 cut(s)	209, 387, 403
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	2 cut(s)	507, 600
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	507, 600
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	2 cut(s)	507, 600
GsaI	CCCAGC	2 cut(s)	700, 731
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	223, 620
HapII	CCGG	2 cut(s)	136, 185
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	213, 391, 407
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HpaII	CCGG	2 cut(s)	136, 185
HphI	GGTGA	3 cut(s)	307, 692, 719
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	6 cut(s)	30, 459, 486, 671, 793, 817
Hpy188III	TCNNGA	7 cut(s)	185, 289, 377, 388, 404, 605, 839
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	4 cut(s)	119, 182, 556, 845
HpyCH4III	ACNGT	2 cut(s)	67, 469
HpyCH4V	TGCA	4 cut(s)	428, 524, 578, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	425, 584, 608, 617, 692
HpyF3I	CTNAG	3 cut(s)	456, 612, 743
Hsp92II	CATG	3 cut(s)	213, 391, 407
HspAI	GCGC	1 cut(s)	243
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	2 cut(s)	518, 586
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	281, 736
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	3 cut(s)	499, 760, 774
MfeI	CAATTG	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	9 cut(s)	4, 204, 338, 348, 480, 579, 768, 787, 847
MnlI	CCTC	6 cut(s)	122, 213, 296, 495, 609, 670
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	3 cut(s)	102, 810, 856
MspI	CCGG	2 cut(s)	136, 185
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	579
MvnI	CGCG	2 cut(s)	45, 243
MwoI	GCNNNNNNNGC	5 cut(s)	425, 584, 608, 617, 692
NciI	CCSGG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	1 cut(s)	384
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	3 cut(s)	213, 391, 407
NlaIV	GGNNCC	1 cut(s)	134
NmeAIII	GCCGAG	1 cut(s)	700
NmuCI	GTSAC	2 cut(s)	281, 736
PagI	TCATGA	2 cut(s)	387, 403
PflFI	GACNNNGTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	508, 601
PspFI	CCCAGC	2 cut(s)	696, 727
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	319, 618
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	2 cut(s)	55, 358
RsaNI	GTAC	2 cut(s)	54, 357
SaqAI	TTAA	3 cut(s)	102, 810, 856
SatI	GCNGC	2 cut(s)	507, 600
Sau3AI	GATC	1 cut(s)	384
Sau96I	GGNCC	2 cut(s)	319, 618
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	697
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	603
SmoI	CTYRAG	1 cut(s)	603
Sse9I	AATT	9 cut(s)	4, 204, 338, 348, 480, 579, 768, 787, 847
SsiI	CCGC	3 cut(s)	45, 154, 241
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	2 cut(s)	67, 469
TaqI	TCGA	1 cut(s)	310
TasI	AATT	9 cut(s)	4, 204, 338, 348, 480, 579, 768, 787, 847
Tru1I	TTAA	3 cut(s)	102, 810, 856
Tru9I	TTAA	3 cut(s)	102, 810, 856
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	2 cut(s)	281, 736
TseI	GCWGC	2 cut(s)	506, 599
Tsp45I	GTSAC	2 cut(s)	281, 736
TspDTI	ATGAA	5 cut(s)	17, 35, 392, 404, 420
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	1 cut(s)	721
Tth111I	GACNNNGTC	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	3 cut(s)	4, 480, 847
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.