Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001997

Physical Location & Seq

Genomic Coordinates Forward (+)

2481160 .. 2483912

Gene Structure 2753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02170.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGGCCTTTTAAAGGCCCCCTTAAACCTTTCGCGTTCTCTCGCTCGCTGCCTGTAAACCCTAAACCCTTGCATCTGCTGCTGGGGCCTGAATACTCCGCATCATCCTCATCACCGTTTCTCCACCGTTGCGACCGCTACGTTCCTCACCTCTCACTGGTTCCGAGAGTGAATATGAATTTCAACAACGTTAAGGTTCCGAAAGTTCCCGGTGGTGGTGCAGTTTCTGCTTTGCTTAAGGTTGGCATAATTGGTGGGCTTGGCTTGTATGGAGCTGCCAACAGTCTGTACAATGTCGAGGGAGGGCATCGAGCCATTGTGTTCAACCGGATAATCGGTGTCAAGGACAAGGTCTATCCAGAGGGTACACACCTTATCATTCCATGGTTTGAGAGGCCAGTCATTTATGATGTCCGTGCACGACCTCATCTAGTGGAGAGCACTTCTGGGAGCCGTGATCTCCAAATGGTGAAAATTGGGCTTCGAGTGCTGACTCGACCTCTACCAGACCAACTGCCTACAGTTTATAGGACTCTTGGTGAGAATTACAATGAGAGAGTCCTTCCTTCCATTGTTCATGAAACTTTGAAAGCTGTTGTTGCACAGTATAATGCTAGTCAGCTCATTACTCAGAGAGAGACTGTTAGTAGGGAAATACGGAAGATTTTGACTGAAAGGGCTGCCAATTTCAACATTGCGCTGGATGATGTCTCAATTACCACTCTCACTTTTGGGAAGGAGTTCACGGCTGCAATTGAGGCCAAACAAGTGGCTGCACAGGAAGCCGAGAGAGCTAAGTTTGTTGTGGACAAGGCTGAACAAGACAAGAAGAGTGCTATCATCAGAGCAGAGGGAGAGGCGACTAGTGCCAAGCTGATTGGTGAAGCTATTGCAAACAATCCGGCATTTATAACACTGAGGAAGATTGAGGCTGCAAGAGAGATTGCACATACAATCTCAAATTCCGCAAACAAAGTTTTCTTGAACTCAGACGATCTGTTGTTGAACCTTCAGGAGATGAATTTGGATATCAACAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

348

Amino Acids

38.23

Weight (kDa)

9.55

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03860 AT1G03860 AT1G03860 AT2G20530 AT2G20530 AT4G28510 AT5G44140
fragaria_vesca	FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_6g26770 FvH4_6g26770
malus_domestica	MD03G1195500.v1.1 MD05G1030500.v1.1 MD11G1212000.v1.1
prunus_persica	Prupe.3G128200_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1
pyrus_communis	pycom05g02170 pycom10g02030 pycom11g18700
rosa_chinensis	RchiOBHm_Chr0c19g0500161 RchiOBHm_Chr2g0128531 RchiOBHm_Chr5g0041011
rosa_laevigata	RLG00000018992 RLG00000034020
rosa_multiflora	Rmu_sc0005650.1_g000009 Rmu_sc0010062.1_g000004 Rmu_sc0033659.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039690 Rroxscaffold_2G00115640 Rroxscaffold_2G00116110
rosa_rugosa	Rorug02G0278000 Rorug05G0189500 Rorug05G0189600
rosa_samantha	Rh2AG329600 Rh2CG316400 Rh2DG355900 Rh5BG280000 Rh5CG312100 Rh5DG288000
rosa_wichuraiana	Rw2G026720 Rw5G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	911
AccII	CGCG	1 cut(s)	35
AciI	CCGC	3 cut(s)	99, 136, 966
AclI	AACGTT	1 cut(s)	189
AcsI	RAATTY	3 cut(s)	178, 961, 1021
AcuI	CTGAAG	1 cut(s)	995
AfaI	GTAC	2 cut(s)	290, 367
AfiI	CCNNNNNNNGG	3 cut(s)	14, 157, 215
AflII	CTTAAG	1 cut(s)	236
AgsI	TTSAA	6 cut(s)	184, 325, 589, 691, 985, 1006
AhlI	ACTAGT	1 cut(s)	863
AluBI	AGCT	6 cut(s)	275, 593, 622, 794, 874, 887
AluI	AGCT	6 cut(s)	275, 593, 622, 794, 874, 887
Alw21I	GWGCWC	2 cut(s)	421, 443
Alw26I	GTCTC	2 cut(s)	632, 715
Alw44I	GTGCAC	1 cut(s)	417
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	5 cut(s)	5, 16, 86, 395, 759
ApaLI	GTGCAC	1 cut(s)	417
ApeKI	GCWGC	7 cut(s)	49, 79, 275, 680, 749, 773, 932
ApoI	RAATTY	3 cut(s)	178, 961, 1021
Asp700I	GAANNNNTTC	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	700
AspS9I	GGNCC	3 cut(s)	5, 17, 86
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	5 cut(s)	105, 140, 481, 551, 893
BaeGI	GKGCMC	1 cut(s)	421
Bbv12I	GWGCWC	2 cut(s)	421, 443
BbvI	GCAGC	7 cut(s)	36, 66, 262, 667, 736, 760, 919
BceAI	ACGGC	2 cut(s)	438, 762
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	632, 715
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	3 cut(s)	431, 615, 864
BfmI	CTRYAG	1 cut(s)	519
BfrI	CTTAAG	1 cut(s)	236
BisI	GCNGC	7 cut(s)	50, 80, 276, 681, 750, 774, 933
BlsI	GCNGC	7 cut(s)	51, 81, 277, 682, 751, 775, 934
Bme1390I	CCNGG	1 cut(s)	210
BmgT120I	GGNCC	3 cut(s)	5, 17, 86
BmiI	GGNNCC	6 cut(s)	6, 19, 87, 162, 198, 452
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	3 cut(s)	82, 110, 316
BpuMI	CCSGG	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	383
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 157, 215
Bse1I	ACTGG	2 cut(s)	162, 398
Bse3DI	GCAATG	1 cut(s)	693
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	2 cut(s)	104, 709
BseLI	CCNNNNNNNGG	3 cut(s)	14, 157, 215
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	3 cut(s)	644, 908, 1002
BseNI	ACTGG	2 cut(s)	162, 398
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	7 cut(s)	36, 66, 262, 667, 736, 760, 919
BseYI	CCCAGC	1 cut(s)	82
BsgI	GTGCAG	2 cut(s)	240, 759
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	5 cut(s)	7, 18, 88, 397, 761
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	421, 443
BsiSI	CCGG	3 cut(s)	210, 328, 902
BslI	CCNNNNNNNGG	3 cut(s)	14, 157, 215
BsmAI	GTCTC	2 cut(s)	632, 715
BsnI	GGCC	5 cut(s)	7, 18, 88, 397, 761
Bsp1286I	GDGCHC	2 cut(s)	421, 443
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	457, 994
Bsp19I	CCATGG	1 cut(s)	383
BspACI	CCGC	3 cut(s)	99, 136, 966
BspANI	GGCC	5 cut(s)	7, 18, 88, 397, 761
BspCNI	CTCAG	3 cut(s)	643, 909, 1001
BspFNI	CGCG	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	6 cut(s)	6, 19, 87, 162, 198, 452
BspTI	CTTAAG	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	693
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	162, 398
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	2 cut(s)	457, 994
BssT1I	CCWWGG	1 cut(s)	383
Bst4CI	ACNGT	6 cut(s)	117, 128, 284, 523, 606, 643
Bst6I	CTCTTC	1 cut(s)	824
BstAFI	CTTAAG	1 cut(s)	236
BstAPI	GCANNNNNTGC	2 cut(s)	79, 227
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	4 cut(s)	630, 795, 917, 988
BstDSI	CCRYGG	1 cut(s)	383
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	104, 709
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	700
BstKTI	GATC	2 cut(s)	460, 997
BstMAI	GTCTC	2 cut(s)	632, 715
BstMBI	GATC	2 cut(s)	457, 994
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	9 cut(s)	79, 85, 227, 487, 599, 758, 782, 791, 866
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	421
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	7 cut(s)	36, 66, 262, 667, 736, 760, 919
BstXI	CCANNNNNNTGG	1 cut(s)	769
BsuRI	GGCC	5 cut(s)	7, 18, 88, 397, 761
BtgI	CCRYGG	1 cut(s)	383
BtsCI	GGATG	2 cut(s)	104, 709
BtsIMutI	CAGTG	2 cut(s)	155, 914
Cac8I	GCNNGC	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	1 cut(s)	700
Cfr13I	GGNCC	3 cut(s)	5, 17, 86
Csp6I	GTAC	2 cut(s)	289, 366
CviAII	CATG	2 cut(s)	384, 578
CviQI	GTAC	2 cut(s)	289, 366
DdeI	CTNAG	4 cut(s)	630, 795, 917, 988
DpnI	GATC	2 cut(s)	459, 996
DpnII	GATC	2 cut(s)	457, 994
DraI	TTTAAA	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	824
EarI	CTCTTC	1 cut(s)	824
Eco130I	CCWWGG	1 cut(s)	383
Eco32I	GATATC	1 cut(s)	1030
Eco57I	CTGAAG	1 cut(s)	995
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	3 cut(s)	5, 17, 86
EcoRV	GATATC	1 cut(s)	1030
EcoT14I	CCWWGG	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	2 cut(s)	387, 581
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	2 cut(s)	383, 577
Fnu4HI	GCNGC	7 cut(s)	50, 80, 276, 681, 750, 774, 933
FokI	GGATG	2 cut(s)	91, 716
Fsp4HI	GCNGC	7 cut(s)	50, 80, 276, 681, 750, 774, 933
FspBI	CTAG	3 cut(s)	431, 615, 864
GlaI	GCGC	1 cut(s)	699
GluI	GCNGC	7 cut(s)	50, 80, 276, 681, 750, 774, 933
GsaI	CCCAGC	1 cut(s)	86
HaeIII	GGCC	5 cut(s)	7, 18, 88, 397, 761
HapII	CCGG	3 cut(s)	210, 328, 902
HhaI	GCGC	1 cut(s)	700
Hin1II	CATG	2 cut(s)	387, 581
Hin6I	GCGC	1 cut(s)	698
HinP1I	GCGC	1 cut(s)	698
HinfI	GANTC	3 cut(s)	493, 532, 558
HpaII	CCGG	3 cut(s)	210, 328, 902
HphI	GGTGA	5 cut(s)	105, 140, 481, 551, 893
Hpy166II	GTNNAC	5 cut(s)	58, 368, 419, 744, 808
Hpy188I	TCNGA	5 cut(s)	165, 201, 633, 845, 991
Hpy188III	TCNNGA	4 cut(s)	359, 578, 982, 1013
Hpy8I	GTNNAC	5 cut(s)	58, 368, 419, 744, 808
HpyAV	CCTTC	4 cut(s)	572, 576, 730, 1019
HpyCH4III	ACNGT	6 cut(s)	117, 128, 284, 523, 606, 643
HpyCH4IV	ACGT	2 cut(s)	141, 189
HpyCH4V	TGCA	9 cut(s)	73, 221, 419, 602, 752, 776, 893, 935, 947
HpyF10VI	GCNNNNNNNGC	9 cut(s)	79, 85, 227, 487, 599, 758, 782, 791, 866
HpyF3I	CTNAG	4 cut(s)	630, 795, 917, 988
HpySE526I	ACGT	2 cut(s)	141, 189
Hsp92II	CATG	2 cut(s)	387, 581
HspAI	GCGC	1 cut(s)	698
Kzo9I	GATC	2 cut(s)	457, 994
LmnI	GCTCC	2 cut(s)	272, 450
Lsp1109I	GCAGC	7 cut(s)	36, 66, 262, 667, 736, 760, 919
LweI	GCATC	3 cut(s)	82, 110, 316
MaeI	CTAG	3 cut(s)	431, 615, 864
MaeII	ACGT	2 cut(s)	141, 189
MalI	GATC	2 cut(s)	459, 996
MboI	GATC	2 cut(s)	457, 994
MboII	GAAGA	3 cut(s)	673, 841, 934
MfeI	CAATTG	1 cut(s)	753
MhlI	GDGCHC	2 cut(s)	421, 443
MluCI	AATT	9 cut(s)	178, 249, 474, 544, 685, 714, 753, 961, 1021
MlyI	GAGTC	3 cut(s)	487, 526, 567
MroXI	GAANNNNTTC	1 cut(s)	740
MseI	TTAA	4 cut(s)	12, 24, 192, 237
MspCI	CTTAAG	1 cut(s)	236
MspI	CCGG	3 cut(s)	210, 328, 902
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	753
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	9 cut(s)	79, 85, 227, 487, 599, 758, 782, 791, 866
NciI	CCSGG	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	383
NdeII	GATC	2 cut(s)	457, 994
NlaIII	CATG	2 cut(s)	387, 581
NlaIV	GGNNCC	6 cut(s)	6, 19, 87, 162, 198, 452
NmeAIII	GCCGAG	1 cut(s)	811
PagI	TCATGA	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	740
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	7 cut(s)	51, 81, 277, 682, 751, 775, 934
PleI	GAGTC	3 cut(s)	487, 526, 566
PpsI	GAGTC	3 cut(s)	487, 526, 566
PsiI	TTATAA	1 cut(s)	911
Psp1406I	AACGTT	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	82
PspN4I	GGNNCC	6 cut(s)	6, 19, 87, 162, 198, 452
PspPI	GGNCC	3 cut(s)	5, 17, 86
PstNI	CAGNNNCTG	1 cut(s)	227
PsyI	GACNNNGTC	1 cut(s)	350
RsaI	GTAC	2 cut(s)	290, 367
RsaNI	GTAC	2 cut(s)	289, 366
SaqAI	TTAA	4 cut(s)	12, 24, 192, 237
SatI	GCNGC	7 cut(s)	50, 80, 276, 681, 750, 774, 933
Sau3AI	GATC	2 cut(s)	457, 994
Sau96I	GGNCC	3 cut(s)	5, 17, 86
SchI	GAGTC	3 cut(s)	487, 526, 567
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	421, 443
SfaNI	GCATC	3 cut(s)	82, 110, 316
SfcI	CTRYAG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	863
Sse9I	AATT	9 cut(s)	178, 249, 474, 544, 685, 714, 753, 961, 1021
SsiI	CCGC	3 cut(s)	99, 136, 966
SspMI	CTAG	3 cut(s)	431, 615, 864
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	6 cut(s)	117, 128, 284, 523, 606, 643
TaiI	ACGT	2 cut(s)	144, 192
TaqI	TCGA	4 cut(s)	297, 310, 484, 496
TasI	AATT	9 cut(s)	178, 249, 474, 544, 685, 714, 753, 961, 1021
TatI	WGTACW	1 cut(s)	288
Tru1I	TTAA	4 cut(s)	12, 24, 192, 237
Tru9I	TTAA	4 cut(s)	12, 24, 192, 237
TscAI	CASTG	2 cut(s)	162, 921
TseI	GCWGC	7 cut(s)	49, 79, 275, 680, 749, 773, 932
TspDTI	ATGAA	4 cut(s)	191, 566, 594, 1034
TspGWI	ACGGA	2 cut(s)	404, 673
TspRI	CASTG	2 cut(s)	162, 921
Tth111I	GACNNNGTC	1 cut(s)	350
Vha464I	CTTAAG	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	417
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	3 cut(s)	178, 961, 1021
XmnI	GAANNNNTTC	1 cut(s)	740
XspI	CTAG	3 cut(s)	431, 615, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.