Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001997

Physical Location & Seq

Genomic Coordinates Forward (+)

13848366 .. 13852385

Gene Structure 4020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G220500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCGTTTCCTCCTGGAATTCCAACCCCTTGTTCACGCAAATGCCATTCCGCATTTCTCGCTTTTATTATTGTGGGCTTTATAGGCATAAACCCTAAACCCTTTCCCGTACATCTCATCTTATTGACGACTATCTTCATCTTCCTTCCGTATTTTTCTGGTTTTCCAGCATTCACAAATATGAATATGAAAAATATGAAAGTTCCCAAAGTGCCTGGTCGTGGGATTGCTACTTTGCTTACAGTGGGAGTTGTTGGTACTCTTGGTATATATGGAATCAACAATAGTCTCTACAATGTCGATGGAGGGCATCGGGCCATTGTGTTCAATCGTCTTGTTGGTATCAAAGACAAGGTTTATCCTGAAGGGACACACCTGATAATCCCATGGTTTGAGAGGCCAGTCATCTATGATGTCCGTGCACGACCACATCTAGTGGAGAGTACTTCTGGAAGCCGTGACCTCCAGATGGTGAAAATAGCACTTCGAGTTCTGACCCGCCCTGTGCCAGACCAGTTACCTACAGTGTATCGAACTCTTGGGGAGAATTATAATGAGAGGGTCCTGCCTTCAATTATCCATGAAACTTTGAAAGCTGTTGTTGCACAGTATAATGCCAGTCAACTCATTACTCAGAGAGAGGCTGTTAGTAGGGAAATAAGGAAAATTTTGACAGAGAGGGCAGCATATTTCAATATCGCGATGGATGATGTGTCGATTACTAGCCTGACTTTTGGAAAGGAGTTTATGATTGCAATTGAAGCCAAGCAGGTGGCTGCACAAGAAGCTGAGAGGGCTAAGTTTGTTGTGGATAAAGCTGAACAAGACAAGAAAAGTGCTGTTATCAGAGCAGAGGGTGAAGCGACAAGTGCCAAGCTCATTGGTGAAGCCATTGCCAACAATCCGGCATTTATCACTCTCAGGAAGATTGAGGCTGCAAGAGAAATTGCGCAAGTTATCTCCAATTCATCAAACAAGGTTTTCTTGAACTCCGAAGATCTTTTGTTAAACCTTCAGGAGATGAATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

344

Amino Acids

38.08

Weight (kDa)

9.39

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03860 AT1G03860 AT1G03860 AT2G20530 AT2G20530 AT4G28510 AT5G44140
fragaria_vesca	FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_6g26770 FvH4_6g26770
malus_domestica	MD03G1195500.v1.1 MD05G1030500.v1.1 MD11G1212000.v1.1
prunus_persica	Prupe.3G128200_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1
pyrus_communis	pycom05g02170 pycom10g02030 pycom11g18700
rosa_chinensis	RchiOBHm_Chr0c19g0500161 RchiOBHm_Chr2g0128531 RchiOBHm_Chr5g0041011
rosa_laevigata	RLG00000018992 RLG00000034020
rosa_multiflora	Rmu_sc0005650.1_g000009 Rmu_sc0010062.1_g000004 Rmu_sc0033659.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039690 Rroxscaffold_2G00115640 Rroxscaffold_2G00116110
rosa_rugosa	Rorug02G0278000 Rorug05G0189500 Rorug05G0189600
rosa_samantha	Rh2AG329600 Rh2CG316400 Rh2DG355900 Rh5BG280000 Rh5CG312100 Rh5DG288000
rosa_wichuraiana	Rw2G026720 Rw5G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AarI	CACCTGC	1 cut(s)	760
Acc16I	TGCGCA	1 cut(s)	951
Acc36I	ACCTGC	1 cut(s)	760
AccII	CGCG	1 cut(s)	701
AciI	CCGC	2 cut(s)	51, 499
AcsI	RAATTY	2 cut(s)	18, 666
AcuI	CTGAAG	2 cut(s)	384, 998
AfaI	GTAC	3 cut(s)	111, 259, 445
AfiI	CCNNNNNNNGG	2 cut(s)	221, 469
AgsI	TTSAA	6 cut(s)	328, 573, 592, 694, 761, 988
AjnI	CCWGG	2 cut(s)	13, 214
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
AluBI	AGCT	4 cut(s)	596, 788, 818, 877
AluI	AGCT	4 cut(s)	596, 788, 818, 877
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	293
Alw44I	GTGCAC	1 cut(s)	420
AoxI	GGCC	2 cut(s)	315, 398
ApaLI	GTGCAC	1 cut(s)	420
ApeKI	GCWGC	3 cut(s)	683, 776, 935
ApoI	RAATTY	2 cut(s)	18, 666
AspLEI	GCGC	1 cut(s)	952
AspS9I	GGNCC	2 cut(s)	315, 562
AsuHPI	GGTGA	3 cut(s)	484, 869, 896
AvaII	GGWCC	1 cut(s)	562
BaeGI	GKGCMC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	3 cut(s)	695, 763, 922
BccI	CCATC	3 cut(s)	296, 463, 697
BceAI	ACGGC	1 cut(s)	441
BciT130I	CCWGG	2 cut(s)	15, 216
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	434, 723
BfmI	CTRYAG	2 cut(s)	522, 1028
BfuAI	ACCTGC	1 cut(s)	760
BglII	AGATCT	1 cut(s)	997
BisI	GCNGC	3 cut(s)	684, 777, 936
BlsI	GCNGC	3 cut(s)	685, 778, 937
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	2 cut(s)	15, 216
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	2 cut(s)	315, 562
BmiI	GGNNCC	1 cut(s)	563
BmrFI	CCNGG	2 cut(s)	15, 216
BmsI	GCATC	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 469
Bse1I	ACTGG	3 cut(s)	401, 514, 618
Bse3DI	GCAATG	1 cut(s)	891
BseBI	CCWGG	2 cut(s)	15, 216
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	1 cut(s)	712
BseLI	CCNNNNNNNGG	2 cut(s)	221, 469
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	3 cut(s)	647, 780, 934
BseNI	ACTGG	3 cut(s)	401, 514, 618
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	3 cut(s)	695, 763, 922
BsgI	GTGCAG	1 cut(s)	762
Bsh1236I	CGCG	1 cut(s)	701
BshFI	GGCC	2 cut(s)	317, 400
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	905
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	221, 469
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	317, 400
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	1 cut(s)	997
Bsp19I	CCATGG	1 cut(s)	386
Bsp68I	TCGCGA	1 cut(s)	701
BspACI	CCGC	2 cut(s)	51, 499
BspANI	GGCC	2 cut(s)	317, 400
BspCNI	CTCAG	3 cut(s)	646, 781, 933
BspFNI	CGCG	1 cut(s)	701
BspLI	GGNNCC	1 cut(s)	563
BspMI	ACCTGC	1 cut(s)	760
BsrDI	GCAATG	1 cut(s)	891
BsrI	ACTGG	3 cut(s)	401, 514, 618
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	1 cut(s)	997
BssT1I	CCWWGG	1 cut(s)	386
Bst2UI	CCWGG	2 cut(s)	15, 216
Bst4CI	ACNGT	3 cut(s)	244, 526, 609
BstDEI	CTNAG	4 cut(s)	633, 789, 798, 920
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	712
BstFNI	CGCG	1 cut(s)	701
BstHHI	GCGC	1 cut(s)	952
BstKTI	GATC	1 cut(s)	1000
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	997
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 84, 602, 761, 785, 794, 869
BstNI	CCWGG	2 cut(s)	15, 216
BstSCI	CCNGG	2 cut(s)	13, 214
BstSFI	CTRYAG	2 cut(s)	522, 1028
BstSLI	GKGCMC	1 cut(s)	424
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	3 cut(s)	695, 763, 922
BstX2I	RGATCY	1 cut(s)	997
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	997
BsuRI	GGCC	2 cut(s)	317, 400
BtgI	CCRYGG	1 cut(s)	386
BtgZI	GCGATG	1 cut(s)	716
BtsCI	GGATG	1 cut(s)	712
BtsIMutI	CAGTG	2 cut(s)	249, 531
BtuMI	TCGCGA	1 cut(s)	701
BveI	ACCTGC	1 cut(s)	760
CfoI	GCGC	1 cut(s)	952
Cfr13I	GGNCC	2 cut(s)	315, 562
Csp6I	GTAC	3 cut(s)	110, 258, 444
CviAII	CATG	2 cut(s)	387, 581
CviQI	GTAC	3 cut(s)	110, 258, 444
DdeI	CTNAG	4 cut(s)	633, 789, 798, 920
DpnI	GATC	1 cut(s)	999
DpnII	GATC	1 cut(s)	997
Eco130I	CCWWGG	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	562
Eco57I	CTGAAG	2 cut(s)	384, 998
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	13, 214
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	2 cut(s)	390, 584
FalI	AAGNNNNNCTT	2 cut(s)	968, 1000
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	2 cut(s)	386, 580
FauI	CCCGC	1 cut(s)	506
Fnu4HI	GCNGC	3 cut(s)	684, 777, 936
FokI	GGATG	1 cut(s)	719
Fsp4HI	GCNGC	3 cut(s)	684, 777, 936
FspBI	CTAG	2 cut(s)	434, 723
FspI	TGCGCA	1 cut(s)	951
GlaI	GCGC	1 cut(s)	951
GluI	GCNGC	3 cut(s)	684, 777, 936
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	2 cut(s)	317, 400
HapII	CCGG	1 cut(s)	905
HhaI	GCGC	1 cut(s)	952
Hin1II	CATG	2 cut(s)	390, 584
Hin6I	GCGC	1 cut(s)	950
HinP1I	GCGC	1 cut(s)	950
HincII	GTYRAC	1 cut(s)	623
HindII	GTYRAC	1 cut(s)	623
HinfI	GANTC	2 cut(s)	276, 1024
HpaII	CCGG	1 cut(s)	905
HphI	GGTGA	3 cut(s)	484, 869, 896
Hpy166II	GTNNAC	3 cut(s)	35, 422, 623
Hpy188I	TCNGA	4 cut(s)	495, 636, 848, 994
Hpy188III	TCNNGA	7 cut(s)	362, 450, 466, 700, 922, 985, 1016
Hpy8I	GTNNAC	3 cut(s)	35, 422, 623
HpyAV	CCTTC	4 cut(s)	155, 359, 579, 1022
HpyCH4III	ACNGT	3 cut(s)	244, 526, 609
HpyCH4V	TGCA	5 cut(s)	422, 605, 755, 779, 938
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 84, 602, 761, 785, 794, 869
HpyF3I	CTNAG	4 cut(s)	633, 789, 798, 920
Hsp92II	CATG	2 cut(s)	390, 584
HspAI	GCGC	1 cut(s)	950
Kzo9I	GATC	1 cut(s)	997
Lsp1109I	GCAGC	3 cut(s)	695, 763, 922
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	2 cut(s)	434, 723
MaeIII	GTNAC	2 cut(s)	458, 516
MalI	GATC	1 cut(s)	999
MboI	GATC	1 cut(s)	997
MboII	GAAGA	4 cut(s)	127, 133, 937, 1007
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	1 cut(s)	997
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	7 cut(s)	18, 547, 573, 666, 756, 945, 964
MmeI	TCCRAC	1 cut(s)	47
MseI	TTAA	1 cut(s)	1007
MslI	CAYNNNNRTG	2 cut(s)	40, 179
MspI	CCGG	1 cut(s)	905
MspR9I	CCNGG	2 cut(s)	15, 216
MunI	CAATTG	1 cut(s)	756
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	2 cut(s)	15, 216
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	7 cut(s)	59, 84, 602, 761, 785, 794, 869
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	1 cut(s)	997
NlaIII	CATG	2 cut(s)	390, 584
NlaIV	GGNNCC	1 cut(s)	563
NmuCI	GTSAC	1 cut(s)	458
NruI	TCGCGA	1 cut(s)	701
NsbI	TGCGCA	1 cut(s)	951
PaqCI	CACCTGC	1 cut(s)	760
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	276, 1024
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	685, 778, 937
PpuMI	RGGWCCY	1 cut(s)	562
PsiI	TTATAA	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	13, 214
PspGI	CCWGG	2 cut(s)	13, 214
PspN4I	GGNNCC	1 cut(s)	563
PspPI	GGNCC	2 cut(s)	315, 562
PspPPI	RGGWCCY	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	997
RruI	TCGCGA	1 cut(s)	701
RsaI	GTAC	3 cut(s)	111, 259, 445
RsaNI	GTAC	3 cut(s)	110, 258, 444
RseI	CAYNNNNRTG	2 cut(s)	40, 179
SaqAI	TTAA	1 cut(s)	1007
SatI	GCNGC	3 cut(s)	684, 777, 936
Sau3AI	GATC	1 cut(s)	997
Sau96I	GGNCC	2 cut(s)	315, 562
ScaI	AGTACT	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	15, 216
SduI	GDGCHC	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	2 cut(s)	522, 1028
SinI	GGWCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	2 cut(s)	40, 179
Sse9I	AATT	7 cut(s)	18, 547, 573, 666, 756, 945, 964
SsiI	CCGC	2 cut(s)	51, 499
SspMI	CTAG	2 cut(s)	434, 723
StyD4I	CCNGG	2 cut(s)	13, 214
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	3 cut(s)	244, 526, 609
TaqI	TCGA	4 cut(s)	300, 487, 532, 716
TasI	AATT	7 cut(s)	18, 547, 573, 666, 756, 945, 964
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	2 cut(s)	276, 1024
Tru1I	TTAA	1 cut(s)	1007
Tru9I	TTAA	1 cut(s)	1007
TscAI	CASTG	2 cut(s)	249, 531
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	3 cut(s)	683, 776, 935
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	6 cut(s)	127, 197, 203, 212, 597, 957
TspGWI	ACGGA	2 cut(s)	138, 407
TspRI	CASTG	2 cut(s)	249, 531
VneI	GTGCAC	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	2 cut(s)	18, 666
XspI	CTAG	2 cut(s)	434, 723
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.