RchiOBHm_Chr5g0041011

Prohibitin-1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001997
Physical Location & Seq
Forward (+)
35641028 .. 35645029
4002 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31948

Sequence Viewer

Length: 855 bp
ATGAATTTCAAGAATATGAAAGTTCCGAAAGTGCCAGTTCGGGGGATTGGTACTTTGCTTACTGTGGGAGTTATTGGTGGTCTTGGTGTTTATGGACTTAACAATGGTCTCTACAATGTTGAAGGAGGGAGCCGGGCTATTGTGTTCAACCGCATTACTGGTGTCAAAGACAAGGTCTATCCGGAAGGGACACACCTAATAATTCCATGGTTTGAGAGGCCAATCATCTATGATGTCCGCGCACGACCCCATTTTGTGGACAGCATTGCTGGAAGCCGTGACCTCCAGATGGTGAAAATAGGGCTTCGAGTTCTGGTCCGTCCTGTGCCTGACCAATTACCTACAATTTATCGTACTTTAGGTGTGGATTATGTTGACAGGATCATGAAGTCAATCATTCATGAAACTTTGAAAGCTGTAGTTGCACAATATAATGCTAGCCAACTGATTACTCAGAGAGAGACCGTTAGTAGGGAAATTCGGAAGATTTTGACAGAGAGGGCAGCCAAGTTCAATATTGCAATGGATGATGTATCTATTACCAGCCTGACTTTTGGGAAGGAGTTTATGATTGCAATTGAAGCGAAACAAGTAGCTGCTCAAGAAGCTGAGAGGGCCAAGTATGTTGTGGAGAAAGCTGAACAAGACAAGAAAAGTGCTATTATCAGAGCCGAGGGTGAAGCAAAAAGTGCCCAGCTGATAGGTGAAGCCACTGCCAAGAACCCAGCATTTGTCACTCTAAGGAAGATTGAAGCTGGAAGAGAAATTGCACAAATCATCTCCAATTCAGATAATAAAGTTTATCTTAACTCCGATAGTCTGTTGCTCAACCTTCAGGAGTTGAATTTGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

284

Amino Acids

31.54

Weight (kDa)

9.5

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 40 - 216 1.4e-30 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 256
AccII CGCG 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 2 cut(s) 151, 238
AclWI GGATC 1 cut(s) 389
AcsI RAATTY 3 cut(s) 4, 477, 844
AcuI CTGAAG 1 cut(s) 818
AfaI GTAC 2 cut(s) 52, 355
AfiI CCNNNNNNNGG 4 cut(s) 41, 256, 289, 471
AgsI TTSAA 8 cut(s) 10, 122, 148, 412, 514, 581, 752, 844
AluBI AGCT 6 cut(s) 416, 596, 608, 638, 697, 755
AluI AGCT 6 cut(s) 416, 596, 608, 638, 697, 755
Alw26I GTCTC 2 cut(s) 113, 455
AlwI GGATC 1 cut(s) 389
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 2 cut(s) 218, 615
ApeKI GCWGC 2 cut(s) 503, 596
ApoI RAATTY 3 cut(s) 4, 477, 844
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 316, 615
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 3 cut(s) 304, 689, 716
AsuNHI GCTAGC 1 cut(s) 437
AvaII GGWCC 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 694
BbvI GCAGC 2 cut(s) 515, 583
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 261
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 113, 455
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 417
BisI GCNGC 2 cut(s) 504, 597
BlsI GCNGC 2 cut(s) 505, 598
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 316, 615
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 134
BmtI GCTAGC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 134
BsaI GGTCTC 2 cut(s) 113, 455
BsaJI CCNNGG 2 cut(s) 206, 672
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 256, 289, 471
Bse1I ACTGG 2 cut(s) 35, 163
Bse3DI GCAATG 2 cut(s) 264, 528
BseAI TCCGGA 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 206, 672
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 4 cut(s) 41, 256, 289, 471
BseMI GCAATG 2 cut(s) 264, 528
BseMII CTCAG 2 cut(s) 467, 600
BseNI ACTGG 2 cut(s) 35, 163
BseSI GKGCMC 1 cut(s) 694
BseXI GCAGC 2 cut(s) 515, 583
BseYI CCCAGC 2 cut(s) 693, 724
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 220, 617
BsiSI CCGG 2 cut(s) 133, 182
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 4 cut(s) 41, 256, 289, 471
BsmAI GTCTC 2 cut(s) 113, 455
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 2 cut(s) 220, 617
Bso31I GGTCTC 2 cut(s) 113, 455
Bsp1286I GDGCHC 1 cut(s) 694
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 1 cut(s) 381
Bsp19I CCATGG 1 cut(s) 206
BspACI CCGC 2 cut(s) 151, 238
BspANI GGCC 2 cut(s) 220, 617
BspCNI CTCAG 2 cut(s) 466, 601
BspEI TCCGGA 1 cut(s) 181
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 2 cut(s) 384, 400
BspLI GGNNCC 1 cut(s) 131
BspOI GCTAGC 1 cut(s) 441
BspPI GGATC 1 cut(s) 389
BspTNI GGTCTC 2 cut(s) 113, 455
BsrDI GCAATG 2 cut(s) 264, 528
BsrI ACTGG 2 cut(s) 35, 163
BssECI CCNNGG 2 cut(s) 206, 672
BssMI GATC 1 cut(s) 381
BssT1I CCWWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 64, 466
Bst6I CTCTTC 1 cut(s) 754
BstAPI GCANNNNNTGC 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 3 cut(s) 453, 609, 740
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 532
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 1 cut(s) 384
BstMAI GTCTC 2 cut(s) 113, 455
BstMBI GATC 1 cut(s) 381
BstMWI GCNNNNNNNGC 5 cut(s) 422, 581, 605, 614, 689
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 417
BstSLI GKGCMC 1 cut(s) 694
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 515, 583
BsuRI GGCC 2 cut(s) 220, 617
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 1 cut(s) 711
Cac8I GCNNGC 1 cut(s) 439
CciI TCATGA 2 cut(s) 384, 400
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 316, 615
Csp6I GTAC 2 cut(s) 51, 354
CviAII CATG 3 cut(s) 207, 385, 401
CviQI GTAC 2 cut(s) 51, 354
DdeI CTNAG 3 cut(s) 453, 609, 740
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 754
EarI CTCTTC 1 cut(s) 754
Eco130I CCWWGG 1 cut(s) 206
Eco31I GGTCTC 2 cut(s) 113, 455
Eco47I GGWCC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 818
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 3 cut(s) 210, 388, 404
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 1 cut(s) 202
FatI CATG 3 cut(s) 206, 384, 400
Fnu4HI GCNGC 2 cut(s) 504, 597
FokI GGATG 1 cut(s) 539
Fsp4HI GCNGC 2 cut(s) 504, 597
FspBI CTAG 1 cut(s) 438
GlaI GCGC 1 cut(s) 241
GluI GCNGC 2 cut(s) 504, 597
GsaI CCCAGC 2 cut(s) 697, 728
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 2 cut(s) 220, 617
HapII CCGG 2 cut(s) 133, 182
HhaI GCGC 1 cut(s) 242
Hin1II CATG 3 cut(s) 210, 388, 404
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HpaII CCGG 2 cut(s) 133, 182
HphI GGTGA 3 cut(s) 304, 689, 716
Hpy166II GTNNAC 2 cut(s) 259, 376
Hpy188I TCNGA 6 cut(s) 27, 456, 483, 668, 790, 814
Hpy188III TCNNGA 7 cut(s) 10, 182, 286, 385, 401, 602, 836
Hpy8I GTNNAC 2 cut(s) 259, 376
HpyAV CCTTC 4 cut(s) 116, 179, 553, 842
HpyCH4III ACNGT 2 cut(s) 64, 466
HpyCH4V TGCA 4 cut(s) 425, 521, 575, 770
HpyF10VI GCNNNNNNNGC 5 cut(s) 422, 581, 605, 614, 689
HpyF3I CTNAG 3 cut(s) 453, 609, 740
Hsp92II CATG 3 cut(s) 210, 388, 404
HspAI GCGC 1 cut(s) 240
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 129
Lsp1109I GCAGC 2 cut(s) 515, 583
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 278, 733
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 3 cut(s) 496, 757, 771
MfeI CAATTG 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 694
MluCI AATT 9 cut(s) 4, 201, 335, 345, 477, 576, 765, 784, 844
MnlI CCTC 6 cut(s) 119, 210, 293, 492, 606, 667
MroI TCCGGA 1 cut(s) 181
MseI TTAA 3 cut(s) 99, 807, 853
MspA1I CMGCKG 1 cut(s) 697
MspI CCGG 2 cut(s) 133, 182
MspR9I CCNGG 1 cut(s) 134
MunI CAATTG 1 cut(s) 576
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 5 cut(s) 422, 581, 605, 614, 689
NciI CCSGG 1 cut(s) 134
NcoI CCATGG 1 cut(s) 206
NdeII GATC 1 cut(s) 381
NheI GCTAGC 1 cut(s) 437
NlaIII CATG 3 cut(s) 210, 388, 404
NlaIV GGNNCC 1 cut(s) 131
NmeAIII GCCGAG 1 cut(s) 697
NmuCI GTSAC 2 cut(s) 278, 733
PagI TCATGA 2 cut(s) 384, 400
PflFI GACNNNGTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 256
PkrI GCNGC 2 cut(s) 505, 598
PspFI CCCAGC 2 cut(s) 693, 724
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 2 cut(s) 316, 615
PsyI GACNNNGTC 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 697
RsaI GTAC 2 cut(s) 52, 355
RsaNI GTAC 2 cut(s) 51, 354
SaqAI TTAA 3 cut(s) 99, 807, 853
SatI GCNGC 2 cut(s) 504, 597
Sau3AI GATC 1 cut(s) 381
Sau96I GGNCC 2 cut(s) 316, 615
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 694
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 600
SmoI CTYRAG 1 cut(s) 600
Sse9I AATT 9 cut(s) 4, 201, 335, 345, 477, 576, 765, 784, 844
SsiI CCGC 2 cut(s) 151, 238
SspI AATATT 1 cut(s) 517
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 2 cut(s) 64, 466
TaqI TCGA 1 cut(s) 307
TasI AATT 9 cut(s) 4, 201, 335, 345, 477, 576, 765, 784, 844
Tru1I TTAA 3 cut(s) 99, 807, 853
Tru9I TTAA 3 cut(s) 99, 807, 853
TscAI CASTG 1 cut(s) 718
TseFI GTSAC 2 cut(s) 278, 733
TseI GCWGC 2 cut(s) 503, 596
Tsp45I GTSAC 2 cut(s) 278, 733
TspDTI ATGAA 5 cut(s) 17, 32, 389, 401, 417
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 1 cut(s) 718
Tth111I GACNNNGTC 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 3 cut(s) 4, 477, 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 625
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.