FvH4_3g23290

Prohibitin-1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001997
Physical Location & Seq
Forward (+)
16363179 .. 16368825
5647 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23290.t1

Sequence Viewer

Length: 855 bp
ATGAATTTTAAGAATATGAAAGTTCCAAAAGTGCCGCTTCGTGGGATTGGTGCTTTGCTTAGTGTGGGAGTTGTTGGTGGTCTAGGTGTTTATGGACTTCACAATAGTGTCTACAATGTTGAAGGAGGAAGCCGTGCTATTGTGTTCAACCGCATTACTGGTATCAAAGACAAGGTCTATCCAGAAGGTACACACCTAATAATTCCCTGGTTTGAGAGGCCAATCATCTATGATGTTCGTGCACGACCCCATGAGACAAGCAGCATTGCTGGAAGTCGTGACCTCCAGATGGTGAAAATAGTGCTTCGAGTTCTGGCCCGTCCTGTGCCTGACCAATTACCTACAATGTATCGTACTCTCGGTGTGGATTATGCTGCCAAGGTCATGCCTTCAATCGTTCATGAAACTTTGAAAGCTGTAGTTGCACAGTATAATGCTAGCCAACTCATTACTCAGAGAGAGACTGTTAGCAGGGAAATTCGGAAGATTTTGACAGAGAGAGCAGCCAAGTTCAATATTGCAATGGATGATGTATCTATTACCAGCCTGACGTTTGGGAACGAGTTCATGACTGCAATTGAAGCCAAACAGGTAGCAGCTCAGGACGCTGAGAGGGCCAAGTATGTTGTGGAGTTAGCTGAACAAGACAAGAAAAGTGCTATTATCAGAGCCCAGGGTGAAGCAAAAAGTGCCCAGCTGATAGGTGAAGCCATTGCCGATAACCCAGCGTTTGTCACTTTAAGGAAGATTGAAGCTGCAAGAGAGATAGCAAAAGAAATATCCAATTCAGCCAATAAAGTTTATCTCAACTCCGATAGTCTTTTGCTCAACCTTCAGGACTTGAAGTTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

285

Amino Acids

31.32

Weight (kDa)

9.43

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 40 - 215 1.9e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 111
AciI CCGC 2 cut(s) 35, 151
AcsI RAATTY 2 cut(s) 4, 477
AcuI CTGAAG 1 cut(s) 818
AfaI GTAC 2 cut(s) 190, 355
AfiI CCNNNNNNNGG 2 cut(s) 41, 289
AgsI TTSAA 8 cut(s) 122, 148, 393, 412, 514, 581, 752, 844
AjnI CCWGG 2 cut(s) 206, 672
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 5 cut(s) 416, 599, 638, 697, 755
AluI AGCT 5 cut(s) 416, 599, 638, 697, 755
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 248, 455
Alw44I GTGCAC 1 cut(s) 240
AoxI GGCC 3 cut(s) 218, 315, 615
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 5 cut(s) 261, 374, 503, 596, 755
ApoI RAATTY 2 cut(s) 4, 477
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
Asp700I GAANNNNTTC 1 cut(s) 563
AspS9I GGNCC 2 cut(s) 316, 615
AsuHPI GGTGA 3 cut(s) 304, 689, 716
AsuNHI GCTAGC 1 cut(s) 437
BaeGI GKGCMC 2 cut(s) 244, 694
BanII GRGCYC 1 cut(s) 673
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 5 cut(s) 273, 361, 515, 608, 742
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 2 cut(s) 208, 674
BcoDI GTCTC 2 cut(s) 248, 455
BfaI CTAG 2 cut(s) 83, 438
BfmI CTRYAG 1 cut(s) 417
BisI GCNGC 6 cut(s) 35, 262, 375, 504, 597, 756
BlsI GCNGC 6 cut(s) 36, 263, 376, 505, 598, 757
Bme1390I CCNGG 2 cut(s) 208, 674
BmgT120I GGNCC 2 cut(s) 316, 615
BmrFI CCNGG 2 cut(s) 208, 674
BmtI GCTAGC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 600
BsaJI CCNNGG 4 cut(s) 206, 378, 672, 673
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 289
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 3 cut(s) 264, 528, 711
BseBI CCWGG 2 cut(s) 208, 674
BseDI CCNNGG 4 cut(s) 206, 378, 672, 673
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 2 cut(s) 41, 289
BseMI GCAATG 3 cut(s) 264, 528, 711
BseMII CTCAG 3 cut(s) 467, 600, 614
BseNI ACTGG 1 cut(s) 163
BseSI GKGCMC 2 cut(s) 244, 694
BseXI GCAGC 5 cut(s) 273, 361, 515, 608, 742
BseYI CCCAGC 2 cut(s) 693, 724
BshFI GGCC 3 cut(s) 220, 317, 617
BsiHKAI GWGCWC 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 41, 289
BsmAI GTCTC 2 cut(s) 248, 455
BsnI GGCC 3 cut(s) 220, 317, 617
Bsp1286I GDGCHC 3 cut(s) 244, 673, 694
BspACI CCGC 2 cut(s) 35, 151
BspANI GGCC 3 cut(s) 220, 317, 617
BspCNI CTCAG 3 cut(s) 466, 601, 613
BspHI TCATGA 2 cut(s) 400, 567
BspOI GCTAGC 1 cut(s) 441
BsrDI GCAATG 3 cut(s) 264, 528, 711
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 4 cut(s) 206, 378, 672, 673
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 208, 674
Bst4CI ACNGT 2 cut(s) 429, 466
BstAPI GCANNNNNTGC 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 4 cut(s) 59, 453, 600, 609
BstF5I GGATG 1 cut(s) 532
BstMAI GTCTC 2 cut(s) 248, 455
BstMWI GCNNNNNNNGC 5 cut(s) 422, 581, 605, 614, 689
BstNI CCWGG 2 cut(s) 208, 674
BstSCI CCNGG 2 cut(s) 206, 672
BstSFI CTRYAG 1 cut(s) 417
BstSLI GKGCMC 2 cut(s) 244, 694
BstV1I GCAGC 5 cut(s) 273, 361, 515, 608, 742
BsuRI GGCC 3 cut(s) 220, 317, 617
BtsCI GGATG 1 cut(s) 532
Cac8I GCNNGC 1 cut(s) 439
CciI TCATGA 2 cut(s) 400, 567
Cfr13I GGNCC 2 cut(s) 316, 615
CseI GACGC 1 cut(s) 614
Csp6I GTAC 2 cut(s) 189, 354
CviAII CATG 4 cut(s) 251, 385, 401, 568
CviQI GTAC 2 cut(s) 189, 354
DdeI CTNAG 4 cut(s) 59, 453, 600, 609
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 818
EcoRII CCWGG 2 cut(s) 206, 672
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 4 cut(s) 254, 388, 404, 571
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FatI CATG 4 cut(s) 250, 384, 400, 567
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 6 cut(s) 35, 262, 375, 504, 597, 756
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 673
Fsp4HI GCNGC 6 cut(s) 35, 262, 375, 504, 597, 756
FspBI CTAG 2 cut(s) 83, 438
GluI GCNGC 6 cut(s) 35, 262, 375, 504, 597, 756
GsaI CCCAGC 2 cut(s) 697, 728
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 3 cut(s) 220, 317, 617
HgaI GACGC 1 cut(s) 614
Hin1II CATG 4 cut(s) 254, 388, 404, 571
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HphI GGTGA 3 cut(s) 304, 689, 716
Hpy166II GTNNAC 4 cut(s) 112, 191, 242, 849
Hpy188I TCNGA 4 cut(s) 456, 483, 668, 814
Hpy188III TCNNGA 7 cut(s) 182, 278, 286, 401, 568, 602, 836
Hpy8I GTNNAC 4 cut(s) 112, 191, 242, 849
HpyAV CCTTC 4 cut(s) 116, 179, 399, 842
HpyCH4III ACNGT 2 cut(s) 429, 466
HpyCH4IV ACGT 1 cut(s) 551
HpyCH4V TGCA 5 cut(s) 242, 425, 521, 575, 758
HpyF10VI GCNNNNNNNGC 5 cut(s) 422, 581, 605, 614, 689
HpyF3I CTNAG 4 cut(s) 59, 453, 600, 609
HpySE526I ACGT 1 cut(s) 551
Hsp92II CATG 4 cut(s) 254, 388, 404, 571
Lsp1109I GCAGC 5 cut(s) 273, 361, 515, 608, 742
MaeI CTAG 2 cut(s) 83, 438
MaeII ACGT 1 cut(s) 551
MaeIII GTNAC 2 cut(s) 278, 733
MboII GAAGA 2 cut(s) 496, 757
MfeI CAATTG 1 cut(s) 576
MhlI GDGCHC 3 cut(s) 244, 673, 694
MluCI AATT 6 cut(s) 4, 201, 335, 477, 576, 784
MnlI CCTC 4 cut(s) 119, 210, 293, 606
MroXI GAANNNNTTC 1 cut(s) 563
MseI TTAA 3 cut(s) 9, 740, 853
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 697
MspR9I CCNGG 2 cut(s) 208, 674
MunI CAATTG 1 cut(s) 576
MvaI CCWGG 2 cut(s) 208, 674
MwoI GCNNNNNNNGC 5 cut(s) 422, 581, 605, 614, 689
NheI GCTAGC 1 cut(s) 437
NlaIII CATG 4 cut(s) 254, 388, 404, 571
NmuCI GTSAC 2 cut(s) 278, 733
OliI CACNNNNGTG 1 cut(s) 105
PagI TCATGA 2 cut(s) 400, 567
PasI CCCWGGG 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 563
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 6 cut(s) 36, 263, 376, 505, 598, 757
Psp6I CCWGG 2 cut(s) 206, 672
PspFI CCCAGC 2 cut(s) 693, 724
PspGI CCWGG 2 cut(s) 206, 672
PspPI GGNCC 2 cut(s) 316, 615
PsyI GACNNNGTC 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 697
RsaI GTAC 2 cut(s) 190, 355
RsaNI GTAC 2 cut(s) 189, 354
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 3 cut(s) 9, 740, 853
SatI GCNGC 6 cut(s) 35, 262, 375, 504, 597, 756
Sau96I GGNCC 2 cut(s) 316, 615
ScrFI CCNGG 2 cut(s) 208, 674
SduI GDGCHC 3 cut(s) 244, 673, 694
SfcI CTRYAG 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 6 cut(s) 4, 201, 335, 477, 576, 784
SsiI CCGC 2 cut(s) 35, 151
SspI AATATT 1 cut(s) 517
SspMI CTAG 2 cut(s) 83, 438
StyD4I CCNGG 2 cut(s) 206, 672
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 429, 466
TaiI ACGT 1 cut(s) 554
TaqI TCGA 1 cut(s) 307
TasI AATT 6 cut(s) 4, 201, 335, 477, 576, 784
TauI GCSGC 1 cut(s) 37
Tru1I TTAA 3 cut(s) 9, 740, 853
Tru9I TTAA 3 cut(s) 9, 740, 853
TseFI GTSAC 2 cut(s) 278, 733
TseI GCWGC 5 cut(s) 261, 374, 503, 596, 755
Tsp45I GTSAC 2 cut(s) 278, 733
TspDTI ATGAA 5 cut(s) 17, 32, 389, 417, 556
Tth111I GACNNNGTC 1 cut(s) 173
VneI GTGCAC 1 cut(s) 240
XapI RAATTY 2 cut(s) 4, 477
XcmI CCANNNNNNNNNTGG 1 cut(s) 625
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 563
XspI CTAG 2 cut(s) 83, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.