Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033659.1

Orthogroup ID

OG0001997

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2117

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033659.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgaatttcaagaacgtcaaggttcctaaggttccaggaggtggtgcagcttctgccttgattaaggtgggaatcattggtgggcttggcttgtatggagttgccaacagtctatacaatgtcgagggagggcatcgagccattgttttcaaccgtatcattggtgtcaaagacaaggtttatccggaggggacacaccttatcatcccatggtttgagaggccggttatttatgatgttcgtgcccgacctcatctggtggagagcacttctggcagccgtgatctccaaatggtgaaaatcgggcttagagttcttactcgtccaatatcagaccagctgcctacagtatatcgaactcttggtgagaattataatgagagagtccttccttccatcgttcatgaaactttgaaggctgttgttgcacagtataatgccagccagctcattactcagagagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

155

Amino Acids

17.1

Weight (kDa)

9.82

Isoelectric Point (pI)

20.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03860 AT1G03860 AT1G03860 AT2G20530 AT2G20530 AT4G28510 AT5G44140
fragaria_vesca	FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_6g26770 FvH4_6g26770
malus_domestica	MD03G1195500.v1.1 MD05G1030500.v1.1 MD11G1212000.v1.1
prunus_persica	Prupe.3G128200_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1
pyrus_communis	pycom05g02170 pycom10g02030 pycom11g18700
rosa_chinensis	RchiOBHm_Chr0c19g0500161 RchiOBHm_Chr2g0128531 RchiOBHm_Chr5g0041011
rosa_laevigata	RLG00000018992 RLG00000034020
rosa_multiflora	Rmu_sc0005650.1_g000009 Rmu_sc0010062.1_g000004 Rmu_sc0033659.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039690 Rroxscaffold_2G00115640 Rroxscaffold_2G00116110
rosa_rugosa	Rorug02G0278000 Rorug05G0189500 Rorug05G0189600
rosa_samantha	Rh2AG329600 Rh2CG316400 Rh2DG355900 Rh5BG280000 Rh5CG312100 Rh5DG288000
rosa_wichuraiana	Rw2G026720 Rw5G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	4
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	10, 151, 415
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	3 cut(s)	50, 340, 448
AluI	AGCT	3 cut(s)	50, 340, 448
Alw21I	GWGCWC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	47, 276, 340
ApoI	RAATTY	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	307, 377
AxyI	CCTNAGG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	269
BbvI	GCAGC	3 cut(s)	59, 288, 327
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	3 cut(s)	48, 277, 341
BlsI	GCNGC	3 cut(s)	49, 278, 342
Bme1390I	CCNGG	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	24, 33
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	223
Bse21I	CCTNAGG	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	3 cut(s)	59, 288, 327
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	185, 224
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	247, 269
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	283
Bsp19I	CCATGG	1 cut(s)	209
BspANI	GGCC	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	24, 33
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	4 cut(s)	110, 155, 349, 432
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	442, 446
BstDEI	CTNAG	3 cut(s)	27, 308, 456
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 273, 425
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	3 cut(s)	59, 288, 327
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	442, 446
CaiI	CAGNNNCTG	1 cut(s)	53
CciI	TCATGA	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	223
CviAII	CATG	2 cut(s)	210, 404
DdeI	CTNAG	3 cut(s)	27, 308, 456
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	209
Eco81I	CCTNAGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	2 cut(s)	213, 407
FaiI	YATR	8 cut(s)	96, 115, 211, 234, 352, 375, 405, 435
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	2 cut(s)	209, 403
Fnu4HI	GCNGC	3 cut(s)	48, 277, 341
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	48, 277, 341
GluI	GCNGC	3 cut(s)	48, 277, 341
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	2 cut(s)	185, 224
Hin1II	CATG	2 cut(s)	213, 407
HinfI	GANTC	2 cut(s)	72, 384
HpaII	CCGG	2 cut(s)	185, 224
HphI	GGTGA	2 cut(s)	307, 377
Hpy188I	TCNGA	2 cut(s)	334, 459
Hpy188III	TCNNGA	3 cut(s)	10, 185, 404
HpyAV	CCTTC	3 cut(s)	398, 402, 409
HpyCH4III	ACNGT	4 cut(s)	110, 155, 349, 432
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	47, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 273, 425
HpyF3I	CTNAG	3 cut(s)	27, 308, 456
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	213, 407
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	283
LpnPI	CCDG	9 cut(s)	21, 48, 198, 237, 242, 258, 350, 454, 458
Lsp1109I	GCAGC	3 cut(s)	59, 288, 327
LweI	GCATC	1 cut(s)	142
MaeII	ACGT	1 cut(s)	15
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	247, 269
MluCI	AATT	2 cut(s)	4, 370
MlyI	GAGTC	1 cut(s)	393
MnlI	CCTC	6 cut(s)	32, 118, 122, 181, 213, 261
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	2 cut(s)	185, 224
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	3 cut(s)	53, 273, 425
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	213, 407
NlaIV	GGNNCC	2 cut(s)	24, 33
PagI	TCATGA	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	49, 278, 342
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	24, 33
PstNI	CAGNNNCTG	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	3 cut(s)	48, 277, 341
Sau3AI	GATC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	2 cut(s)	247, 269
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	4, 370
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	4 cut(s)	110, 155, 349, 432
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	123, 136, 355
TasI	AATT	2 cut(s)	4, 370
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	3 cut(s)	47, 276, 340
TspDTI	ATGAA	3 cut(s)	17, 392, 420
Van91I	CCANNNNNTGG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.