Rorug05G0189500

Prohibitin-1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001997
Physical Location & Seq
Forward (+)
18409593 .. 18411458
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0189500.1

Sequence Viewer

Length: 1365 bp
ATGGAGTGTCTTTGTTATGAGAACTCAGCGTGGAGCAAGATGGGTTCAGAGATCAAGGTTGAAGTCATTCACAAAGAAACAATCATACCATCCTCTCCAACTCCTCCCCACCTTGAAAGTTTGAGCCTCTCTGTTTTTGATCAGCTTCAACCTGAATTTTATGTCCCACTTCTTCTCTTCTATCCCAACAGTAGCAATGAGATCAATATTGATCACCATTCTTTGGCTGCTGAAAGATCCAGCCTTCTAAAAACATCATTGTCTAAAACCCTTACTCACTTCTACCCCTTTGCAGGAAAATTTGAATATAACGTTTCGATAAGTTGCAATGATCATGGGGCAGCATTTCTTCAAGCCCAAGTGAACTGTCCCATATCCACAGTTCTGGAAAAACCTGATCACGAGGTTTTAAAACAACTGCTTCCAGCTGATATAGCATCTACACAAGAAGTCGCAGGCCACCTTCTACTAGTGCAGGCCAACTTCTTTGAATGTGGTGGGATGGCAATTGGAGTCAACATCTCACATAAGGTCGGTGATGCTTTTACATTCAGCAAATTCATTAATAGCTGGGCTGCAGTTTCCTTTGGCTCCAGTGCTAGTGATCATATAGTGGTTCCAGCTGTAGAATTTGGTGTTGTGGCTTCTCTCTGTCCACCGCTAGATTTCTTCAACTCGCGACAACCTATTGTTGAATTTGCTAAAGAAAAATCGGTCACAGAAAGATTTGTGTTTGAAGCCTCAAAGATTGATGCTCTTAAGTCCAAAGCTGCTAGCTCCACTGTGCCAAATCCTACGCGTGTTGAAGTTGTATCTGCACTCATTTGGAAATGTGCCACGGAAGCATCAAGATCAAACTTGGGTTCTGTGAGGCCATCTGTGTGGTGTCAAGTGGTGAACATGCGGAAAAGATCAGGGCAGCCCTTGACAGAGAACTCACTGGGAAATTTTGTTTGGTACTTTGCATCAATGACAATGGAAAGTGAAATAGATCTCCAAAGCTTGGTTGCTAAATTCAGGAAAGGCATTGAGGAATTTAAAGAAAAATATCCTAATGGAGTTAGTCCGCAGGACGTATGTCAAACCATACAGGAATCTGGGAACCTCATGACAAAGGATGGTATAGACAATTATAGTTGCAGCAGCTGGTGCAGATTTCCCTTCTATGAAGCCAATTTTGGATGGGGTAAGCCATCATGGGTGAGTATCCGTACTATGGCAGCAAAAAACACAATTCAATTGACAGACACGAGAGATGGAAAGGGTATAGAAGTGTCCCTGGCTTTGAAAGAAGAAGATATGGCCATAATTGGTAGTAATGAGGAGCTGCTTGCATATACATCTCTAAATCCAGCTGCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

454

Amino Acids

50.12

Weight (kDa)

5.4

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 19 - 443 2.9e-90 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 223, 1003
AccII CGCG 2 cut(s) 679, 799
AciI CCGC 3 cut(s) 659, 904, 1067
AclI AACGTT 1 cut(s) 312
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 1302
AcsI RAATTY 8 cut(s) 155, 299, 557, 629, 695, 946, 1013, 1034
AfaI GTAC 2 cut(s) 959, 1213
AfiI CCNNNNNNNGG 4 cut(s) 223, 293, 1003, 1216
AflII CTTAAG 1 cut(s) 758
AflIII ACRYGT 1 cut(s) 797
AhlI ACTAGT 1 cut(s) 469
AjnI CCWGG 1 cut(s) 1278
AjuI GAANNNNNNNTTGG 4 cut(s) 937, 969, 1161, 1193
AlwI GGATC 1 cut(s) 231
AlwNI CAGNNNCTG 1 cut(s) 1146
AoxI GGCC 4 cut(s) 457, 477, 872, 1302
ApoI RAATTY 8 cut(s) 155, 299, 557, 629, 695, 946, 1013, 1034
AseI ATTAAT 1 cut(s) 564
Asp700I GAANNNNTTC 1 cut(s) 66
AsuHPI GGTGA 4 cut(s) 206, 548, 907, 1213
AsuNHI GCTAGC 1 cut(s) 773
BalI TGGCCA 1 cut(s) 1304
BauI CACGAG 2 cut(s) 401, 1249
BccI CCATC 8 cut(s) 34, 97, 496, 883, 1112, 1176, 1201, 1250
BciT130I CCWGG 1 cut(s) 1280
BciVI GTATCC 1 cut(s) 1217
BclI TGATCA 5 cut(s) 139, 211, 331, 397, 604
BcuI ACTAGT 1 cut(s) 469
BfaI CTAG 4 cut(s) 470, 600, 662, 774
BfmI CTRYAG 2 cut(s) 576, 624
BfrI CTTAAG 1 cut(s) 758
BfuI GTATCC 1 cut(s) 1217
BglII AGATCT 1 cut(s) 991
Bme1390I CCNGG 1 cut(s) 1280
BmiI GGNNCC 3 cut(s) 592, 618, 1103
BmrFI CCNGG 1 cut(s) 1280
BmrI ACTGGG 1 cut(s) 950
BmsI GCATC 5 cut(s) 446, 529, 742, 854, 974
BmtI GCTAGC 1 cut(s) 777
BmuI ACTGGG 1 cut(s) 950
BoxI GACNNNNGTC 1 cut(s) 1077
BpmI CTGGAG 1 cut(s) 577
BsaJI CCNNGG 2 cut(s) 837, 1278
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 293, 1003, 1216
Bse1I ACTGG 2 cut(s) 594, 945
Bse3DI GCAATG 2 cut(s) 202, 334
BseBI CCWGG 1 cut(s) 1280
BseDI CCNNGG 2 cut(s) 837, 1278
BseGI GGATG 4 cut(s) 89, 507, 1123, 1187
BseLI CCNNNNNNNGG 4 cut(s) 223, 293, 1003, 1216
BseMI GCAATG 2 cut(s) 202, 334
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 594, 945
BseRI GAGGAG 2 cut(s) 93, 1337
BseYI CCCAGC 1 cut(s) 570
BsgI GTGCAG 3 cut(s) 494, 801, 1171
Bsh1236I CGCG 2 cut(s) 679, 799
BshFI GGCC 4 cut(s) 459, 479, 874, 1304
BslFI GGGAC 3 cut(s) 149, 354, 1261
BslI CCNNNNNNNGG 4 cut(s) 223, 293, 1003, 1216
BsmFI GGGAC 3 cut(s) 149, 354, 1261
BsnI GGCC 4 cut(s) 459, 479, 874, 1304
Bsp68I TCGCGA 1 cut(s) 679
BspACI CCGC 3 cut(s) 659, 904, 1067
BspANI GGCC 4 cut(s) 459, 479, 874, 1304
BspCNI CTCAG 1 cut(s) 38
BspFNI CGCG 2 cut(s) 679, 799
BspHI TCATGA 1 cut(s) 1107
BspLI GGNNCC 3 cut(s) 592, 618, 1103
BspMAI CTGCAG 1 cut(s) 580
BspOI GCTAGC 1 cut(s) 777
BspPI GGATC 1 cut(s) 231
BspTI CTTAAG 1 cut(s) 758
BsrDI GCAATG 2 cut(s) 202, 334
BsrI ACTGG 2 cut(s) 594, 945
BssECI CCNNGG 2 cut(s) 837, 1278
BssSI CACGAG 2 cut(s) 401, 1249
Bst2BI CACGAG 2 cut(s) 401, 1249
Bst2UI CCWGG 1 cut(s) 1280
Bst4CI ACNGT 4 cut(s) 191, 368, 382, 784
Bst6I CTCTTC 1 cut(s) 182
BstAFI CTTAAG 1 cut(s) 758
BstAPI GCANNNNNTGC 1 cut(s) 1149
BstC8I GCNNGC 4 cut(s) 457, 477, 775, 1332
BstDEI CTNAG 1 cut(s) 25
BstDSI CCRYGG 1 cut(s) 837
BstF5I GGATG 4 cut(s) 89, 507, 1123, 1187
BstFNI CGCG 2 cut(s) 679, 799
BstMWI GCNNNNNNNGC 3 cut(s) 434, 842, 1149
BstNI CCWGG 1 cut(s) 1280
BstNSI RCATGY 1 cut(s) 904
BstPAI GACNNNNGTC 1 cut(s) 1077
BstSCI CCNGG 1 cut(s) 1278
BstSFI CTRYAG 2 cut(s) 576, 624
BstUI CGCG 2 cut(s) 679, 799
BstX2I RGATCY 2 cut(s) 236, 991
BstXI CCANNNNNNTGG 2 cut(s) 385, 882
BstYI RGATCY 2 cut(s) 236, 991
BsuI GTATCC 1 cut(s) 1217
BsuRI GGCC 4 cut(s) 459, 479, 874, 1304
BtgI CCRYGG 1 cut(s) 837
BtsCI GGATG 4 cut(s) 89, 507, 1123, 1187
BtsIMutI CAGTG 3 cut(s) 601, 780, 938
BtuMI TCGCGA 1 cut(s) 679
Cac8I GCNNGC 4 cut(s) 457, 477, 775, 1332
CaiI CAGNNNCTG 1 cut(s) 1146
CciI TCATGA 1 cut(s) 1107
Csp6I GTAC 2 cut(s) 958, 1212
CviAII CATG 4 cut(s) 335, 901, 1108, 1197
CviQI GTAC 2 cut(s) 958, 1212
DdeI CTNAG 1 cut(s) 25
DraI TTTAAA 2 cut(s) 411, 1039
EaeI YGGCCR 1 cut(s) 1302
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 1278
FaeI CATG 4 cut(s) 338, 904, 1111, 1200
FaqI GGGAC 3 cut(s) 149, 354, 1261
FatI CATG 4 cut(s) 334, 900, 1107, 1196
FbaI TGATCA 5 cut(s) 139, 211, 331, 397, 604
FokI GGATG 4 cut(s) 76, 514, 1130, 1194
FspBI CTAG 4 cut(s) 470, 600, 662, 774
GsaI CCCAGC 1 cut(s) 574
GsuI CTGGAG 1 cut(s) 577
HaeIII GGCC 4 cut(s) 459, 479, 874, 1304
Hin1II CATG 4 cut(s) 338, 904, 1111, 1200
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 1 cut(s) 1000
HinfI GANTC 2 cut(s) 513, 1094
HphI GGTGA 4 cut(s) 206, 548, 907, 1213
Hpy166II GTNNAC 4 cut(s) 364, 517, 656, 898
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 6 cut(s) 386, 401, 678, 849, 1018, 1108
Hpy8I GTNNAC 4 cut(s) 364, 517, 656, 898
HpyAV CCTTC 3 cut(s) 254, 473, 1171
HpyCH4III ACNGT 4 cut(s) 191, 368, 382, 784
HpyCH4IV ACGT 2 cut(s) 312, 1074
HpyCH4V TGCA 9 cut(s) 293, 327, 475, 578, 818, 965, 1140, 1152, 1334
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 842, 1149
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 2 cut(s) 312, 1074
Hsp92II CATG 4 cut(s) 338, 904, 1111, 1200
Ksp22I TGATCA 5 cut(s) 139, 211, 331, 397, 604
LmnI GCTCC 4 cut(s) 33, 596, 782, 1324
LweI GCATC 5 cut(s) 446, 529, 742, 854, 974
MaeI CTAG 4 cut(s) 470, 600, 662, 774
MaeII ACGT 2 cut(s) 312, 1074
MaeIII GTNAC 1 cut(s) 715
MboII GAAGA 6 cut(s) 164, 169, 341, 661, 1304, 1307
MfeI CAATTG 2 cut(s) 507, 1238
MflI RGATCY 2 cut(s) 236, 991
MlsI TGGCCA 1 cut(s) 1304
MluI ACGCGT 1 cut(s) 797
MluNI TGGCCA 1 cut(s) 1304
MlyI GAGTC 1 cut(s) 522
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 9 cut(s) 103, 114, 137, 397, 751, 864, 1024, 1115, 1315
Mox20I TGGCCA 1 cut(s) 1304
MroXI GAANNNNTTC 1 cut(s) 66
MscI TGGCCA 1 cut(s) 1304
MseI TTAA 4 cut(s) 410, 564, 759, 1038
MslI CAYNNNNRTG 1 cut(s) 880
Msp20I TGGCCA 1 cut(s) 1304
MspA1I CMGCKG 4 cut(s) 428, 623, 1146, 1355
MspCI CTTAAG 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 1280
MunI CAATTG 2 cut(s) 507, 1238
MvaI CCWGG 1 cut(s) 1280
MvnI CGCG 2 cut(s) 679, 799
MwoI GCNNNNNNNGC 3 cut(s) 434, 842, 1149
NheI GCTAGC 1 cut(s) 773
NlaIII CATG 4 cut(s) 338, 904, 1111, 1200
NlaIV GGNNCC 3 cut(s) 592, 618, 1103
NmuCI GTSAC 1 cut(s) 715
NruI TCGCGA 1 cut(s) 679
NspI RCATGY 1 cut(s) 904
PagI TCATGA 1 cut(s) 1107
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 1094
PflMI CCANNNNNTGG 2 cut(s) 223, 1003
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PshAI GACNNNNGTC 1 cut(s) 1077
PshBI ATTAAT 1 cut(s) 564
Psp1406I AACGTT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 1278
PspFI CCCAGC 1 cut(s) 570
PspGI CCWGG 1 cut(s) 1278
PspN4I GGNNCC 3 cut(s) 592, 618, 1103
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 1 cut(s) 1146
PsuI RGATCY 2 cut(s) 236, 991
PvuII CAGCTG 4 cut(s) 428, 623, 1146, 1355
RruI TCGCGA 1 cut(s) 679
RsaI GTAC 2 cut(s) 959, 1213
RsaNI GTAC 2 cut(s) 958, 1212
RseI CAYNNNNRTG 1 cut(s) 880
SaqAI TTAA 4 cut(s) 410, 564, 759, 1038
SchI GAGTC 1 cut(s) 522
ScrFI CCNGG 1 cut(s) 1280
SfaNI GCATC 5 cut(s) 446, 529, 742, 854, 974
SfcI CTRYAG 2 cut(s) 576, 624
SmiMI CAYNNNNRTG 1 cut(s) 880
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
SpeI ACTAGT 1 cut(s) 469
SsiI CCGC 3 cut(s) 659, 904, 1067
SspI AATATT 1 cut(s) 208
SspMI CTAG 4 cut(s) 470, 600, 662, 774
StyD4I CCNGG 1 cut(s) 1278
TaaI ACNGT 4 cut(s) 191, 368, 382, 784
TaiI ACGT 2 cut(s) 315, 1077
TaqI TCGA 1 cut(s) 317
TaqII GACCGA 1 cut(s) 703
TfiI GAWTC 1 cut(s) 1094
Tru1I TTAA 4 cut(s) 410, 564, 759, 1038
Tru9I TTAA 4 cut(s) 410, 564, 759, 1038
TscAI CASTG 3 cut(s) 601, 787, 945
TseFI GTSAC 1 cut(s) 715
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 2 cut(s) 550, 1182
TspGWI ACGGA 2 cut(s) 854, 1199
TspRI CASTG 3 cut(s) 601, 787, 945
Van91I CCANNNNNTGG 2 cut(s) 223, 1003
Vha464I CTTAAG 1 cut(s) 758
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 8 cut(s) 155, 299, 557, 629, 695, 946, 1013, 1034
XceI RCATGY 1 cut(s) 904
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 4 cut(s) 470, 600, 662, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.