Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001997

Physical Location & Seq

Genomic Coordinates Reverse (-)

44242112 .. 44247257

Gene Structure 5146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTTGTTTCCATTCCATAGGCAACAACCTATTCTCCAAGATGACGATGTTGTTTCAGGAGGGAGATTTAAAATGGGATCGTGGATATCATTCCTTTCAATTAGTGGGCTCAGGTCACTGGAGGACGGCTATGTTGATGTGGTGGGCTTAGGGACTTTGGATCTACTACTTGACCTAGGGCTGGAGATCATATCTTTCTTGAGCCTGCCTCTCCATATCCCTCAAAATCTCCTTGCCCTAATCTTAAGGCGTTGCTGGTCAATTTCCAGCAGTCCTATCTCAGCAAGGAGAACTATGAATTTCAAGAATGTTAAGGTTCCTAAGGTTCCAGGAGGTGGTGCAGCTTCTGCCTTGATTAAGGTGGGAATCATTGGTGGGCTTGGCTTGTATGGAGTTGCCAACAGTCTATACAATGTCGAGGGAGGGCATCGAGCCATTGTTTTCAACCGTATCATTGGTGTCAAAGACAAGGTTTATCCGGAGGGGACACACCTTATCATCCCATGGTTTGAGAGGCCGGTTATTTATGATGTTCGTGCCCGACCTCATCTGGTGGAGAGCACTTCTGGCAGCCGTGATCTCCAAATGGTGAAAATCGGGCTTAGAGTTCTTACTCGTCCAATATCAGACCAGCTGCCTACAGTATATCGAACTCTTGGTGAGAATTATAATGAGAGAGTCCTTCCTTCCATCGTTCATGAAACTTTGAAGGCTGTTGTTGCACAGTATAATGCCAGCCAGCTCATTACTCAGAGAGAGGCTGTTAGTAGGGAAATAAGGAAGATCTTGACTGAAAGGGCTACCAATTTCAACATTGCTCTGGATGATGTGTCAATTACCAGCCTTACTTTTGGGAGGGAGTTTACAGCTGCAATTGAGGCCAAACAGGTGGCTGCACAAGAAGCTGAGAGAGCTAAGTTTGTTGTGGAAAAGGCTGAGCAGGACAAGAGAAGTGCTATCATCAGAGCACAGGGTGAGGCCACAAGTGCCAAGCTGATTGGTGAAGCTATTGCGAACAACCCGGCATTCATCACACTGAGGAAGATTGAAGCTGCTAGAGAAATAGCACATACCATGGCAAATTCATCAAACAAAGTTTACTTGAGTTCCGATGATCTGCTGCTGAACCTTCAGGACTTGAACTTGGACGTGAGCAAGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

389

Amino Acids

42.82

Weight (kDa)

9.35

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	138 - 315	2.5e-30	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03860 AT1G03860 AT1G03860 AT2G20530 AT2G20530 AT4G28510 AT5G44140
fragaria_vesca	FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_6g26770 FvH4_6g26770
malus_domestica	MD03G1195500.v1.1 MD05G1030500.v1.1 MD11G1212000.v1.1
prunus_persica	Prupe.3G128200_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1
pyrus_communis	pycom05g02170 pycom10g02030 pycom11g18700
rosa_chinensis	RchiOBHm_Chr0c19g0500161 RchiOBHm_Chr2g0128531 RchiOBHm_Chr5g0041011
rosa_laevigata	RLG00000018992 RLG00000034020
rosa_multiflora	Rmu_sc0005650.1_g000009 Rmu_sc0010062.1_g000004 Rmu_sc0033659.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039690 Rroxscaffold_2G00115640 Rroxscaffold_2G00116110
rosa_rugosa	Rorug02G0278000 Rorug05G0189500 Rorug05G0189600
rosa_samantha	Rh2AG329600 Rh2CG316400 Rh2DG355900 Rh5BG280000 Rh5CG312100 Rh5DG288000
rosa_wichuraiana	Rw2G026720 Rw5G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccIII	TCCGGA	1 cut(s)	478
AclWI	GGATC	2 cut(s)	85, 168
AcsI	RAATTY	2 cut(s)	298, 1081
AcuI	CTGAAG	1 cut(s)	1115
AdeI	CACNNNGTG	1 cut(s)	974
AfiI	CCNNNNNNNGG	2 cut(s)	181, 335
AflII	CTTAAG	1 cut(s)	244
AgsI	TTSAA	7 cut(s)	99, 304, 445, 709, 811, 1049, 1141
AjiI	CACGTC	1 cut(s)	1150
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	9 cut(s)	344, 634, 742, 869, 905, 914, 994, 1007, 1052
AluI	AGCT	9 cut(s)	344, 634, 742, 869, 905, 914, 994, 1007, 1052
Alw21I	GWGCWC	2 cut(s)	563, 970
AlwI	GGATC	2 cut(s)	85, 168
AlwNI	CAGNNNCTG	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	478
AoxI	GGCC	3 cut(s)	515, 879, 978
ApeKI	GCWGC	7 cut(s)	341, 570, 634, 869, 893, 1052, 1120
ApoI	RAATTY	2 cut(s)	298, 1081
AspA2I	CCTAGG	1 cut(s)	175
AsuC2I	CCSGG	1 cut(s)	1022
AsuHPI	GGTGA	4 cut(s)	601, 671, 986, 1013
AvrII	CCTAGG	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	563, 970
BbvI	GCAGC	7 cut(s)	353, 582, 621, 856, 880, 1039, 1107
BccI	CCATC	1 cut(s)	698
BceAI	ACGGC	2 cut(s)	142, 558
BciT130I	CCWGG	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	1022
BfaI	CTAG	2 cut(s)	176, 1056
BfmI	CTRYAG	1 cut(s)	639
BfrI	CTTAAG	1 cut(s)	244
BglII	AGATCT	1 cut(s)	783
BisI	GCNGC	7 cut(s)	342, 571, 635, 870, 894, 1053, 1121
BlnI	CCTAGG	1 cut(s)	175
BlpI	GCTNAGC	1 cut(s)	936
BlsI	GCNGC	7 cut(s)	343, 572, 636, 871, 895, 1054, 1122
Bme1390I	CCNGG	2 cut(s)	330, 1022
BmgBI	CACGTC	1 cut(s)	1150
BmiI	GGNNCC	2 cut(s)	318, 327
BmrFI	CCNGG	2 cut(s)	330, 1022
BmsI	GCATC	1 cut(s)	436
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpmI	CTGGAG	2 cut(s)	140, 203
Bpu10I	CCTNAGC	2 cut(s)	110, 148
Bpu1102I	GCTNAGC	1 cut(s)	936
BpuEI	CTTGAG	2 cut(s)	220, 1123
BpuMI	CCSGG	1 cut(s)	1022
BsaJI	CCNNGG	3 cut(s)	175, 503, 1074
BsaWI	WCCGGW	1 cut(s)	478
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 335
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	123
Bse21I	CCTNAGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	813
BseAI	TCCGGA	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	175, 503, 1074
BseGI	GGATG	2 cut(s)	498, 829
BseLI	CCNNNNNNNGG	2 cut(s)	181, 335
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	6 cut(s)	124, 294, 764, 897, 927, 1028
BseNI	ACTGG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	7 cut(s)	353, 582, 621, 856, 880, 1039, 1107
BsgI	GTGCAG	2 cut(s)	360, 879
BshFI	GGCC	3 cut(s)	517, 881, 980
BsiHKAI	GWGCWC	2 cut(s)	563, 970
BsiSI	CCGG	3 cut(s)	479, 518, 1022
BslFI	GGGAC	2 cut(s)	166, 499
BslI	CCNNNNNNNGG	2 cut(s)	181, 335
BsmFI	GGGAC	2 cut(s)	166, 499
BsmI	GAATGC	1 cut(s)	1025
BsnI	GGCC	3 cut(s)	517, 881, 980
Bsp1286I	GDGCHC	4 cut(s)	111, 541, 563, 970
Bsp13I	TCCGGA	1 cut(s)	478
Bsp143I	GATC	6 cut(s)	77, 160, 186, 577, 783, 1114
Bsp1720I	GCTNAGC	1 cut(s)	936
Bsp19I	CCATGG	2 cut(s)	503, 1074
BspANI	GGCC	3 cut(s)	517, 881, 980
BspCNI	CTCAG	6 cut(s)	123, 293, 763, 898, 928, 1029
BspEI	TCCGGA	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	2 cut(s)	318, 327
BspPI	GGATC	2 cut(s)	85, 168
BspTI	CTTAAG	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	813
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	3 cut(s)	175, 503, 1074
BssMI	GATC	6 cut(s)	77, 160, 186, 577, 783, 1114
BssT1I	CCWWGG	3 cut(s)	175, 503, 1074
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	4 cut(s)	404, 449, 643, 726
BstAFI	CTTAAG	1 cut(s)	244
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	206, 736, 740
BstDSI	CCRYGG	2 cut(s)	503, 1074
BstF5I	GGATG	2 cut(s)	498, 829
BstKTI	GATC	6 cut(s)	80, 163, 189, 580, 786, 1117
BstMBI	GATC	6 cut(s)	77, 160, 186, 577, 783, 1114
BstMWI	GCNNNNNNNGC	7 cut(s)	347, 567, 719, 878, 902, 911, 986
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	328, 1020
BstSFI	CTRYAG	1 cut(s)	639
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	7 cut(s)	353, 582, 621, 856, 880, 1039, 1107
BstX2I	RGATCY	2 cut(s)	160, 783
BstXI	CCANNNNNNTGG	1 cut(s)	889
BstYI	RGATCY	2 cut(s)	160, 783
Bsu36I	CCTNAGG	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	517, 881, 980
BtgI	CCRYGG	2 cut(s)	503, 1074
BtrI	CACGTC	1 cut(s)	1150
BtsCI	GGATG	2 cut(s)	498, 829
BtsIMutI	CAGTG	2 cut(s)	116, 1034
Cac8I	GCNNGC	3 cut(s)	206, 736, 740
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	1 cut(s)	697
Cfr10I	RCCGGY	1 cut(s)	517
CviAII	CATG	3 cut(s)	504, 698, 1075
DpnI	GATC	6 cut(s)	79, 162, 188, 579, 785, 1116
DpnII	GATC	6 cut(s)	77, 160, 186, 577, 783, 1114
DraI	TTTAAA	1 cut(s)	70
DraIII	CACNNNGTG	1 cut(s)	974
Eco130I	CCWWGG	3 cut(s)	175, 503, 1074
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	1115
Eco81I	CCTNAGG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	328
EcoRV	GATATC	1 cut(s)	87
EcoT14I	CCWWGG	3 cut(s)	175, 503, 1074
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	3 cut(s)	175, 503, 1074
FaeI	CATG	3 cut(s)	507, 701, 1078
FaqI	GGGAC	2 cut(s)	166, 499
FatI	CATG	3 cut(s)	503, 697, 1074
Fnu4HI	GCNGC	7 cut(s)	342, 571, 635, 870, 894, 1053, 1121
FokI	GGATG	2 cut(s)	485, 836
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	7 cut(s)	342, 571, 635, 870, 894, 1053, 1121
FspBI	CTAG	2 cut(s)	176, 1056
GluI	GCNGC	7 cut(s)	342, 571, 635, 870, 894, 1053, 1121
GsuI	CTGGAG	2 cut(s)	140, 203
HaeIII	GGCC	3 cut(s)	517, 881, 980
HapII	CCGG	3 cut(s)	479, 518, 1022
Hin1II	CATG	3 cut(s)	507, 701, 1078
HinfI	GANTC	2 cut(s)	366, 678
HpaII	CCGG	3 cut(s)	479, 518, 1022
HphI	GGTGA	4 cut(s)	601, 671, 986, 1013
Hpy166II	GTNNAC	2 cut(s)	864, 1099
Hpy188I	TCNGA	4 cut(s)	628, 753, 965, 1111
Hpy188III	TCNNGA	8 cut(s)	57, 199, 304, 479, 698, 787, 821, 1133
Hpy8I	GTNNAC	2 cut(s)	864, 1099
HpyAV	CCTTC	4 cut(s)	692, 696, 703, 1139
HpyCH4III	ACNGT	4 cut(s)	404, 449, 643, 726
HpyCH4IV	ACGT	1 cut(s)	1149
HpyCH4V	TGCA	4 cut(s)	341, 722, 872, 896
HpyF10VI	GCNNNNNNNGC	7 cut(s)	347, 567, 719, 878, 902, 911, 986
HpySE526I	ACGT	1 cut(s)	1149
Hsp92II	CATG	3 cut(s)	507, 701, 1078
Kpn2I	TCCGGA	1 cut(s)	478
Kzo9I	GATC	6 cut(s)	77, 160, 186, 577, 783, 1114
Lsp1109I	GCAGC	7 cut(s)	353, 582, 621, 856, 880, 1039, 1107
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	176, 1056
MaeII	ACGT	1 cut(s)	1149
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	6 cut(s)	79, 162, 188, 579, 785, 1116
MboI	GATC	6 cut(s)	77, 160, 186, 577, 783, 1114
MboII	GAAGA	2 cut(s)	793, 1054
MfeI	CAATTG	1 cut(s)	873
MflI	RGATCY	2 cut(s)	160, 783
MhlI	GDGCHC	4 cut(s)	111, 541, 563, 970
MluCI	AATT	8 cut(s)	99, 261, 298, 664, 805, 834, 873, 1081
MlyI	GAGTC	1 cut(s)	687
MroI	TCCGGA	1 cut(s)	478
MseI	TTAA	4 cut(s)	69, 245, 312, 357
MspA1I	CMGCKG	2 cut(s)	634, 869
MspCI	CTTAAG	1 cut(s)	244
MspI	CCGG	3 cut(s)	479, 518, 1022
MspR9I	CCNGG	2 cut(s)	330, 1022
MunI	CAATTG	1 cut(s)	873
Mva1269I	GAATGC	1 cut(s)	1025
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	7 cut(s)	347, 567, 719, 878, 902, 911, 986
NciI	CCSGG	1 cut(s)	1022
NcoI	CCATGG	2 cut(s)	503, 1074
NdeII	GATC	6 cut(s)	77, 160, 186, 577, 783, 1114
NlaIII	CATG	3 cut(s)	507, 701, 1078
NlaIV	GGNNCC	2 cut(s)	318, 327
NmuCI	GTSAC	1 cut(s)	114
PagI	TCATGA	1 cut(s)	697
PctI	GAATGC	1 cut(s)	1025
PfeI	GAWTC	1 cut(s)	366
PflMI	CCANNNNNTGG	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	7 cut(s)	343, 572, 636, 871, 895, 1054, 1122
PleI	GAGTC	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	686
PsiI	TTATAA	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	318, 327
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	160, 783
PvuII	CAGCTG	2 cut(s)	634, 869
SaqAI	TTAA	4 cut(s)	69, 245, 312, 357
SatI	GCNGC	7 cut(s)	342, 571, 635, 870, 894, 1053, 1121
Sau3AI	GATC	6 cut(s)	77, 160, 186, 577, 783, 1114
SchI	GAGTC	1 cut(s)	687
ScrFI	CCNGG	2 cut(s)	330, 1022
SduI	GDGCHC	4 cut(s)	111, 541, 563, 970
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	639
SmlI	CTYRAG	3 cut(s)	199, 244, 1102
SmoI	CTYRAG	3 cut(s)	199, 244, 1102
Sse9I	AATT	8 cut(s)	99, 261, 298, 664, 805, 834, 873, 1081
SspMI	CTAG	2 cut(s)	176, 1056
StyD4I	CCNGG	2 cut(s)	328, 1020
StyI	CCWWGG	3 cut(s)	175, 503, 1074
TaaI	ACNGT	4 cut(s)	404, 449, 643, 726
TaiI	ACGT	1 cut(s)	1152
TaqI	TCGA	3 cut(s)	417, 430, 649
TasI	AATT	8 cut(s)	99, 261, 298, 664, 805, 834, 873, 1081
TfiI	GAWTC	1 cut(s)	366
Tru1I	TTAA	4 cut(s)	69, 245, 312, 357
Tru9I	TTAA	4 cut(s)	69, 245, 312, 357
TscAI	CASTG	2 cut(s)	123, 1041
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	7 cut(s)	341, 570, 634, 869, 893, 1052, 1120
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	5 cut(s)	311, 686, 714, 1018, 1074
TspRI	CASTG	2 cut(s)	123, 1041
Van91I	CCANNNNNTGG	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	244
XapI	RAATTY	2 cut(s)	298, 1081
XmaJI	CCTAGG	1 cut(s)	175
XspI	CTAG	2 cut(s)	176, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.