Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001997

Physical Location & Seq

Genomic Coordinates Forward (+)

17762491 .. 17763666

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAATGTGAAAAAAGTTCCAAACGTTCCTGGATCACCTGCACTCTCTGCCTTGCTTAAGCTCGGTGTTATTGGTGGACTTGGACTCTATTGCATTGGTAGTAGCATGTACAATGTCGATGGAGGACACCGTGCCATCGTGTTTAACCGGTTTACCGGTATCAAAGATAGGGTTTATCCAGAGGGTACTCATTTTAAGATACCATTGTTTGAAAGAGCAATTATCTATGATGTTCGTTCTCGACCTTACGTTGAGAATAGCCAAACTGGAAGTAATGATCTTCAAACGGTGACTATTGGGCTTAGGGTACTTACACGTCCTATGGGAGACCGCTTACCCGAGATTTACAGAACACTCGGTCAGAATTATGGAGAGCGAGTTCTTCCTTCCATTATCAATGAAACACTGAAAGCAGTAGTGGCTCAGTACAATGCAAGCCACCTCATTACACAGAGAGAAGCTGTGAGTAGGGAGATACGCAAGATTGTGACAGAGCGAGCAGCTAAATTTAACATTGCTTTAGATGATGTATCTATCACAAACCTCAAATTTGGCAAAGAGTTTACTGAAGCAATCGAGAAGAAACAAGTTGCGGCTCAGGAAGCAGAACGGGCTAAGTTCATTGTCGAAAAGGCCGAGCAAGACAAGAAAAGTGCTATTATCCGCGCTCAGGGAGAAGCTAAGAGTGCTCAACTCATAGGGCAAGCTATTGCGAACAATGAAGCTTTCATTACTCTGAGGAAGATTGAAGCTGCAAGAGAGATTGCTCAGACCATAGCTAAATCGGCGAACAAGGTTTACCTAAACTCCAGTGATCTCTTAATCTCCAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019866 GO:0030054 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0055044 GO:0070469 GO:0071944 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

278

Amino Acids

30.76

Weight (kDa)

9.64

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	38 - 213	4.7e-33	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03860 AT1G03860 AT1G03860 AT2G20530 AT2G20530 AT4G28510 AT5G44140
fragaria_vesca	FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_6g26770 FvH4_6g26770
malus_domestica	MD03G1195500.v1.1 MD05G1030500.v1.1 MD11G1212000.v1.1
prunus_persica	Prupe.3G128200_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1
pyrus_communis	pycom05g02170 pycom10g02030 pycom11g18700
rosa_chinensis	RchiOBHm_Chr0c19g0500161 RchiOBHm_Chr2g0128531 RchiOBHm_Chr5g0041011
rosa_laevigata	RLG00000018992 RLG00000034020
rosa_multiflora	Rmu_sc0005650.1_g000009 Rmu_sc0010062.1_g000004 Rmu_sc0033659.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039690 Rroxscaffold_2G00115640 Rroxscaffold_2G00116110
rosa_rugosa	Rorug02G0278000 Rorug05G0189500 Rorug05G0189600
rosa_samantha	Rh2AG329600 Rh2CG316400 Rh2DG355900 Rh5BG280000 Rh5CG312100 Rh5DG288000
rosa_wichuraiana	Rw2G026720 Rw5G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	46
AccII	CGCG	1 cut(s)	666
AciI	CCGC	3 cut(s)	331, 593, 664
AclI	AACGTT	1 cut(s)	24
AclWI	GGATC	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	506, 548
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	4 cut(s)	110, 187, 309, 428
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflII	CTTAAG	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	314
AgeI	ACCGGT	2 cut(s)	147, 155
AgsI	TTSAA	3 cut(s)	212, 284, 749
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	28
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
AluBI	AGCT	8 cut(s)	61, 461, 503, 680, 707, 725, 752, 779
AluI	AGCT	8 cut(s)	61, 461, 503, 680, 707, 725, 752, 779
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	633
ApeKI	GCWGC	2 cut(s)	500, 752
ApoI	RAATTY	2 cut(s)	506, 548
AsiGI	ACCGGT	2 cut(s)	147, 155
AspLEI	GCGC	1 cut(s)	668
AsuHPI	GGTGA	2 cut(s)	27, 301
AvaI	CYCGRG	1 cut(s)	338
BaeI	ACNNNNGTAYC	2 cut(s)	191, 224
Bbv12I	GWGCWC	1 cut(s)	691
BbvI	GCAGC	2 cut(s)	512, 739
BccI	CCATC	2 cut(s)	113, 143
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	3 cut(s)	501, 594, 753
BlsI	GCNGC	3 cut(s)	502, 595, 754
Bme1390I	CCNGG	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	793
Bpu10I	CCTNAGC	3 cut(s)	302, 597, 669
BsaI	GGTCTC	1 cut(s)	321
BsaWI	WCCGGW	2 cut(s)	147, 155
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 791, 821
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse118I	RCCGGY	2 cut(s)	147, 155
Bse1I	ACTGG	2 cut(s)	271, 810
Bse3DI	GCAATG	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	5 cut(s)	437, 611, 683, 728, 782
BseNI	ACTGG	2 cut(s)	271, 810
BseXI	GCAGC	2 cut(s)	512, 739
BsgI	GTGCAG	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	666
BshFI	GGCC	1 cut(s)	635
BshTI	ACCGGT	2 cut(s)	147, 155
BsiHKAI	GWGCWC	1 cut(s)	691
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	148, 156
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	635
Bso31I	GGTCTC	1 cut(s)	321
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	32, 277, 814
BspACI	CCGC	3 cut(s)	331, 593, 664
BspANI	GGCC	1 cut(s)	635
BspCNI	CTCAG	5 cut(s)	436, 610, 682, 729, 781
BspFNI	CGCG	1 cut(s)	666
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	40
BspTI	CTTAAG	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	513
BsrFI	RCCGGY	2 cut(s)	147, 155
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	271, 810
BssAI	RCCGGY	2 cut(s)	147, 155
BssMI	GATC	3 cut(s)	32, 277, 814
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	131, 289
BstAFI	CTTAAG	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	436, 498, 705
BstDEI	CTNAG	8 cut(s)	302, 423, 597, 615, 669, 681, 737, 768
BstFNI	CGCG	1 cut(s)	666
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	3 cut(s)	35, 280, 817
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	32, 277, 814
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 419, 602, 611, 686, 785
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	2 cut(s)	512, 739
BsuRI	GGCC	1 cut(s)	635
BtrI	CACGTC	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	404, 817
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	3 cut(s)	436, 498, 705
CfoI	GCGC	1 cut(s)	668
Cfr10I	RCCGGY	2 cut(s)	147, 155
Csp6I	GTAC	4 cut(s)	109, 186, 308, 427
CspAI	ACCGGT	2 cut(s)	147, 155
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	4 cut(s)	109, 186, 308, 427
DdeI	CTNAG	8 cut(s)	302, 423, 597, 615, 669, 681, 737, 768
DpnI	GATC	3 cut(s)	34, 279, 816
DpnII	GATC	3 cut(s)	32, 277, 814
Eco31I	GGTCTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	28
FaeI	CATG	1 cut(s)	109
FaiI	YATR	6 cut(s)	107, 228, 323, 369, 698, 776
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	501, 594, 753
Fsp4HI	GCNGC	3 cut(s)	501, 594, 753
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	3 cut(s)	501, 594, 753
GsuI	CTGGAG	1 cut(s)	793
HaeIII	GGCC	1 cut(s)	635
HapII	CCGG	2 cut(s)	148, 156
HhaI	GCGC	1 cut(s)	668
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	2 cut(s)	148, 156
HphI	GGTGA	2 cut(s)	27, 301
Hpy166II	GTNNAC	4 cut(s)	77, 153, 564, 799
Hpy188I	TCNGA	3 cut(s)	363, 738, 771
Hpy188III	TCNNGA	4 cut(s)	179, 240, 577, 599
Hpy8I	GTNNAC	4 cut(s)	77, 153, 564, 799
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	2 cut(s)	131, 289
HpyCH4IV	ACGT	3 cut(s)	24, 249, 316
HpyCH4V	TGCA	4 cut(s)	41, 93, 434, 755
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 419, 602, 611, 686, 785
HpyF3I	CTNAG	8 cut(s)	302, 423, 597, 615, 669, 681, 737, 768
HpySE526I	ACGT	3 cut(s)	24, 249, 316
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	666
Kzo9I	GATC	3 cut(s)	32, 277, 814
Lsp1109I	GCAGC	2 cut(s)	512, 739
MaeII	ACGT	3 cut(s)	24, 249, 316
MaeIII	GTNAC	2 cut(s)	289, 487
MalI	GATC	3 cut(s)	34, 279, 816
MboI	GATC	3 cut(s)	32, 277, 814
MboII	GAAGA	4 cut(s)	272, 374, 592, 754
MhlI	GDGCHC	1 cut(s)	691
MluCI	AATT	4 cut(s)	219, 364, 506, 548
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	116, 175, 452, 554, 732
MseI	TTAA	5 cut(s)	57, 144, 195, 510, 821
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	2 cut(s)	148, 156
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	6 cut(s)	47, 419, 602, 611, 686, 785
NdeII	GATC	3 cut(s)	32, 277, 814
NlaIII	CATG	1 cut(s)	109
NmeAIII	GCCGAG	1 cut(s)	661
NmuCI	GTSAC	2 cut(s)	289, 487
NspI	RCATGY	1 cut(s)	109
PaqCI	CACCTGC	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PfoI	TCCNGGA	1 cut(s)	28
PinAI	ACCGGT	2 cut(s)	147, 155
PkrI	GCNGC	3 cut(s)	502, 595, 754
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Psp1406I	AACGTT	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PsrI	GAACNNNNNNTAC	2 cut(s)	782, 814
RsaI	GTAC	4 cut(s)	110, 187, 309, 428
RsaNI	GTAC	4 cut(s)	109, 186, 308, 427
SaqAI	TTAA	5 cut(s)	57, 144, 195, 510, 821
SatI	GCNGC	3 cut(s)	501, 594, 753
Sau3AI	GATC	3 cut(s)	32, 277, 814
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	691
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	4 cut(s)	219, 364, 506, 548
SsiI	CCGC	3 cut(s)	331, 593, 664
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	131, 289
TaiI	ACGT	3 cut(s)	27, 252, 319
TaqI	TCGA	4 cut(s)	117, 241, 576, 627
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	4 cut(s)	219, 364, 506, 548
TatI	WGTACW	2 cut(s)	108, 426
TauI	GCSGC	1 cut(s)	596
Tru1I	TTAA	5 cut(s)	57, 144, 195, 510, 821
Tru9I	TTAA	5 cut(s)	57, 144, 195, 510, 821
TscAI	CASTG	2 cut(s)	411, 817
TseFI	GTSAC	2 cut(s)	289, 487
TseI	GCWGC	2 cut(s)	500, 752
Tsp45I	GTSAC	2 cut(s)	289, 487
TspDTI	ATGAA	5 cut(s)	17, 414, 610, 718, 735
TspRI	CASTG	2 cut(s)	411, 817
Vha464I	CTTAAG	1 cut(s)	56
XapI	RAATTY	2 cut(s)	506, 548
XceI	RCATGY	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.