Rh2AG329600

Prohibitin-1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001997
Physical Location & Seq
Reverse (-)
47425150 .. 47430328
5179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG329600.1

Sequence Viewer

Length: 663 bp
ATGTCGTTAAATCAGCTAGTAGTCAAGTTGCAATTCATTTTGTGTTCTCTTATAATATGTTTGTGTTTTCATTGTGCTGTCAAGGTGAAAATCGGGCTTAGAGTTCTTACTCGTCCAATATCAGACCAGCTGCCTACAGTATATCGAACTCTTGGTGAGAATTATAATGAGAGAGTCCTTCCTTCCATCGTTCATGAAACTTTGAAGGCTGTTGTTGCACAGTATAATGCCAGCCAGCTCATTACTCAGAGAGAGGCTGTTAGTAGGGAAATAAGGAAGATCTTGACTGAAAGGGCTACCAATTTCAACATTGCTCTGGATGATGTGTCAATTACCAGCCTTACTTTTGGGAGGGAGTTCACAGCTGCAATTGAGGCCAAACAGGTGGCTGCACAAGAAGCTGAGAGAGCTAAGTTTGTTGTGGAAAAGGCTGAGCAGGACAAGAGAAGTGCTATCATCAGAGCACAGGGTGAGGCCACAAGTGCCAAGCTGATTGGTGAAGCTATTGCGAACAACCCAGCATTCATCACACTGAGGAAGATTGAAGCTGCTAGAGAAATAGCACATACCATGGCAAATTCATCAAACAAAGTTTACTTGAGTTCCGATGATCTGCTGCTGAACCTTCAGGACTTGAACTTGGACGTGAGCAAGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

220

Amino Acids

24.47

Weight (kDa)

9.04

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 28 - 147 4e-17 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 53, 165
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 611
AdeI CACNNNGTG 1 cut(s) 470
AgsI TTSAA 4 cut(s) 205, 307, 545, 637
AjiI CACGTC 1 cut(s) 646
AluBI AGCT 9 cut(s) 16, 130, 238, 365, 401, 410, 490, 503, 548
AluI AGCT 9 cut(s) 16, 130, 238, 365, 401, 410, 490, 503, 548
Alw21I GWGCWC 1 cut(s) 466
AoxI GGCC 2 cut(s) 375, 474
ApeKI GCWGC 5 cut(s) 130, 365, 389, 548, 616
ApoI RAATTY 1 cut(s) 577
AsuHPI GGTGA 4 cut(s) 97, 167, 482, 509
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 5 cut(s) 117, 352, 376, 535, 603
BccI CCATC 1 cut(s) 194
BfaI CTAG 2 cut(s) 17, 552
BfmI CTRYAG 1 cut(s) 135
BglII AGATCT 1 cut(s) 279
BisI GCNGC 5 cut(s) 131, 366, 390, 549, 617
BlpI GCTNAGC 1 cut(s) 432
BlsI GCNGC 5 cut(s) 132, 367, 391, 550, 618
BmgBI CACGTC 1 cut(s) 646
Bpu1102I GCTNAGC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 619
BsaJI CCNNGG 1 cut(s) 570
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 570
BseGI GGATG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 4 cut(s) 260, 393, 423, 524
BseXI GCAGC 5 cut(s) 117, 352, 376, 535, 603
BseYI CCCAGC 1 cut(s) 517
BsgI GTGCAG 1 cut(s) 375
BshFI GGCC 2 cut(s) 377, 476
BsiHKAI GWGCWC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 2 cut(s) 377, 476
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 2 cut(s) 279, 610
Bsp1720I GCTNAGC 1 cut(s) 432
Bsp19I CCATGG 1 cut(s) 570
BspANI GGCC 2 cut(s) 377, 476
BspCNI CTCAG 4 cut(s) 259, 394, 424, 525
BspHI TCATGA 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 570
BssMI GATC 2 cut(s) 279, 610
BssT1I CCWWGG 1 cut(s) 570
Bst4CI ACNGT 2 cut(s) 139, 222
BstC8I GCNNGC 2 cut(s) 232, 236
BstDEI CTNAG 6 cut(s) 98, 246, 402, 411, 432, 533
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 2 cut(s) 282, 613
BstMBI GATC 2 cut(s) 279, 610
BstMWI GCNNNNNNNGC 5 cut(s) 215, 374, 398, 407, 482
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 5 cut(s) 117, 352, 376, 535, 603
BstX2I RGATCY 1 cut(s) 279
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 1 cut(s) 279
BsuRI GGCC 2 cut(s) 377, 476
BtgI CCRYGG 1 cut(s) 570
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 530
Cac8I GCNNGC 2 cut(s) 232, 236
CciI TCATGA 1 cut(s) 193
CviAII CATG 2 cut(s) 194, 571
DdeI CTNAG 6 cut(s) 98, 246, 402, 411, 432, 533
DpnI GATC 2 cut(s) 281, 612
DpnII GATC 2 cut(s) 279, 610
DraIII CACNNNGTG 1 cut(s) 470
Eco130I CCWWGG 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 611
EcoT14I CCWWGG 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 2 cut(s) 197, 574
FaiI YATR 8 cut(s) 53, 58, 142, 165, 195, 225, 567, 572
FatI CATG 2 cut(s) 193, 570
Fnu4HI GCNGC 5 cut(s) 131, 366, 390, 549, 617
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 5 cut(s) 131, 366, 390, 549, 617
FspBI CTAG 2 cut(s) 17, 552
GluI GCNGC 5 cut(s) 131, 366, 390, 549, 617
GsaI CCCAGC 1 cut(s) 521
HaeIII GGCC 2 cut(s) 377, 476
Hin1II CATG 2 cut(s) 197, 574
HinfI GANTC 1 cut(s) 174
HphI GGTGA 4 cut(s) 97, 167, 482, 509
Hpy166II GTNNAC 2 cut(s) 360, 595
Hpy188I TCNGA 4 cut(s) 124, 249, 461, 607
Hpy188III TCNNGA 4 cut(s) 194, 283, 317, 629
Hpy8I GTNNAC 2 cut(s) 360, 595
HpyAV CCTTC 4 cut(s) 188, 192, 199, 635
HpyCH4III ACNGT 2 cut(s) 139, 222
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 4 cut(s) 31, 218, 368, 392
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 374, 398, 407, 482
HpyF3I CTNAG 6 cut(s) 98, 246, 402, 411, 432, 533
HpySE526I ACGT 1 cut(s) 645
Hsp92II CATG 2 cut(s) 197, 574
Kzo9I GATC 2 cut(s) 279, 610
Lsp1109I GCAGC 5 cut(s) 117, 352, 376, 535, 603
MaeI CTAG 2 cut(s) 17, 552
MaeII ACGT 1 cut(s) 645
MalI GATC 2 cut(s) 281, 612
MboI GATC 2 cut(s) 279, 610
MboII GAAGA 2 cut(s) 289, 550
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 6 cut(s) 32, 160, 301, 330, 369, 577
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 5 cut(s) 247, 345, 367, 466, 528
MseI TTAA 1 cut(s) 8
MspA1I CMGCKG 2 cut(s) 130, 365
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 521
MwoI GCNNNNNNNGC 5 cut(s) 215, 374, 398, 407, 482
NcoI CCATGG 1 cut(s) 570
NdeII GATC 2 cut(s) 279, 610
NlaIII CATG 2 cut(s) 197, 574
PagI TCATGA 1 cut(s) 193
PctI GAATGC 1 cut(s) 521
PkrI GCNGC 5 cut(s) 132, 367, 391, 550, 618
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PsiI TTATAA 2 cut(s) 53, 165
PspFI CCCAGC 1 cut(s) 517
PsuI RGATCY 1 cut(s) 279
PvuII CAGCTG 2 cut(s) 130, 365
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 5 cut(s) 131, 366, 390, 549, 617
Sau3AI GATC 2 cut(s) 279, 610
SchI GAGTC 1 cut(s) 183
SduI GDGCHC 1 cut(s) 466
SfcI CTRYAG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 598
SmoI CTYRAG 1 cut(s) 598
Sse9I AATT 6 cut(s) 32, 160, 301, 330, 369, 577
SspMI CTAG 2 cut(s) 17, 552
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 2 cut(s) 139, 222
TaiI ACGT 1 cut(s) 648
TaqI TCGA 1 cut(s) 145
TasI AATT 6 cut(s) 32, 160, 301, 330, 369, 577
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 537
TseI GCWGC 5 cut(s) 130, 365, 389, 548, 616
TspDTI ATGAA 6 cut(s) 25, 59, 182, 210, 514, 570
TspRI CASTG 1 cut(s) 537
XapI RAATTY 1 cut(s) 577
XspI CTAG 2 cut(s) 17, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.