Rh2DG355900

Prohibitin-1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001997
Physical Location & Seq
Reverse (-)
49983672 .. 49988727
5056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG355900.1

Sequence Viewer

Length: 717 bp
ATGAATTTCAAGAACGTTAAGGTTCCTAAGGTTCCAGGAGTTGGTGCAGCTTCTGCCTTGATTAAGGTGGGAATCATTGGTGGGCTTGGCTTGTATGGAGTTGCCAACAGTCTATACAACGTCGAGGGAGGGCATCGAGCCATTGTTTTCAACCGTATCATTGGTGTCAAAGACAAGGTTTATCCGGAGGGGACACACCTTATCATCCCATGGTTTGAGAGGCCGGTTATTTATGATGTTCGTGCCCGACCTCATCTGGTGGAGAGCACTTCTGGCAGCCGTGATCTCCAAATGGTGAAAATCGGGCTTAGAGTTCTTACTCGTCCAATATCAGACCAGCTGCCTACAGTATATCGAACTCTTGGTGAGAATTATAATGAGAGAGTCCTTCCTTCCATCGTTCATGAAACTTTGAAGGCTGTTGTTGCACAGTATAATGCCAGCCAGCTCATTACTCAGAGAGAGGCTGTTAGTAGGGAAATAAGGAAGATCTTGACTGAAAGGGCTACCAATTTCAACATTGCTCTGGATGATGTGTCAATTACCAGCCTTACTTTTGGGAGGGAGTTCACAGCTGCAATTGAGGCCAAACAGGTGGCTGCACAAGAAGCTGAGAGAGCTAAGTTTGTTGTGGAAAAGGCTGAGCAGGACAAGAGAAGTGCTATCATCAGAGCACAGGTGAGTTGGAAAGATTCTCAAATAGATAATATTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

238

Amino Acids

26.5

Weight (kDa)

9.57

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 40 - 217 5.5e-31 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccB7I CCANNNNNTGG 1 cut(s) 41
AccIII TCCGGA 1 cut(s) 184
AclI AACGTT 1 cut(s) 15
AcsI RAATTY 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 4 cut(s) 10, 151, 415, 517
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 6 cut(s) 50, 340, 448, 575, 611, 620
AluI AGCT 6 cut(s) 50, 340, 448, 575, 611, 620
Alw21I GWGCWC 2 cut(s) 269, 676
AlwNI CAGNNNCTG 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 2 cut(s) 221, 585
ApeKI GCWGC 5 cut(s) 47, 276, 340, 575, 599
ApoI RAATTY 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 307, 377, 691
AxyI CCTNAGG 1 cut(s) 27
BaeGI GKGCMC 1 cut(s) 247
Bbv12I GWGCWC 2 cut(s) 269, 676
BbvI GCAGC 5 cut(s) 59, 288, 327, 562, 586
BccI CCATC 1 cut(s) 404
BceAI ACGGC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 345
BglII AGATCT 1 cut(s) 489
BisI GCNGC 5 cut(s) 48, 277, 341, 576, 600
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 5 cut(s) 49, 278, 342, 577, 601
Bme1390I CCNGG 1 cut(s) 36
BmiI GGNNCC 2 cut(s) 24, 33
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 142
Bpu1102I GCTNAGC 1 cut(s) 642
BsaJI CCNNGG 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 223
Bse21I CCTNAGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 519
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 204, 535
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 3 cut(s) 470, 603, 633
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 5 cut(s) 59, 288, 327, 562, 586
BsgI GTGCAG 2 cut(s) 66, 585
BshFI GGCC 2 cut(s) 223, 587
BsiHKAI GWGCWC 2 cut(s) 269, 676
BsiSI CCGG 2 cut(s) 185, 224
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 2 cut(s) 223, 587
Bsp1286I GDGCHC 3 cut(s) 247, 269, 676
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 2 cut(s) 283, 489
Bsp1720I GCTNAGC 1 cut(s) 642
Bsp19I CCATGG 1 cut(s) 209
BspANI GGCC 2 cut(s) 223, 587
BspCNI CTCAG 3 cut(s) 469, 604, 634
BspEI TCCGGA 1 cut(s) 184
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 24, 33
BsrDI GCAATG 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 2 cut(s) 283, 489
BssT1I CCWWGG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 4 cut(s) 110, 155, 349, 432
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 442, 446
BstDEI CTNAG 6 cut(s) 27, 308, 456, 612, 621, 642
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 204, 535
BstKTI GATC 2 cut(s) 286, 492
BstMBI GATC 2 cut(s) 283, 489
BstMWI GCNNNNNNNGC 6 cut(s) 53, 273, 425, 584, 608, 617
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 5 cut(s) 59, 288, 327, 562, 586
BstX2I RGATCY 1 cut(s) 489
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 1 cut(s) 489
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 2 cut(s) 223, 587
BtgI CCRYGG 1 cut(s) 209
BtsCI GGATG 2 cut(s) 204, 535
Cac8I GCNNGC 2 cut(s) 442, 446
CaiI CAGNNNCTG 1 cut(s) 53
CciI TCATGA 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 223
CviAII CATG 2 cut(s) 210, 404
DdeI CTNAG 6 cut(s) 27, 308, 456, 612, 621, 642
DpnI GATC 2 cut(s) 285, 491
DpnII GATC 2 cut(s) 283, 489
Eco130I CCWWGG 1 cut(s) 209
Eco81I CCTNAGG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 2 cut(s) 213, 407
FaiI YATR 8 cut(s) 96, 115, 211, 234, 352, 375, 405, 435
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 209, 403
Fnu4HI GCNGC 5 cut(s) 48, 277, 341, 576, 600
FokI GGATG 2 cut(s) 191, 542
Fsp4HI GCNGC 5 cut(s) 48, 277, 341, 576, 600
GluI GCNGC 5 cut(s) 48, 277, 341, 576, 600
HaeIII GGCC 2 cut(s) 223, 587
HapII CCGG 2 cut(s) 185, 224
Hin1II CATG 2 cut(s) 213, 407
HinfI GANTC 3 cut(s) 72, 384, 692
HpaII CCGG 2 cut(s) 185, 224
HphI GGTGA 3 cut(s) 307, 377, 691
Hpy166II GTNNAC 1 cut(s) 570
Hpy188I TCNGA 3 cut(s) 334, 459, 671
Hpy188III TCNNGA 5 cut(s) 10, 185, 404, 493, 527
Hpy8I GTNNAC 1 cut(s) 570
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 398, 402, 409
HpyCH4III ACNGT 4 cut(s) 110, 155, 349, 432
HpyCH4IV ACGT 2 cut(s) 15, 120
HpyCH4V TGCA 4 cut(s) 47, 428, 578, 602
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 273, 425, 584, 608, 617
HpyF3I CTNAG 6 cut(s) 27, 308, 456, 612, 621, 642
HpySE526I ACGT 2 cut(s) 15, 120
Hsp92II CATG 2 cut(s) 213, 407
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 283, 489
Lsp1109I GCAGC 5 cut(s) 59, 288, 327, 562, 586
LweI GCATC 1 cut(s) 142
MaeII ACGT 2 cut(s) 15, 120
MalI GATC 2 cut(s) 285, 491
MboI GATC 2 cut(s) 283, 489
MboII GAAGA 1 cut(s) 499
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 3 cut(s) 247, 269, 676
MluCI AATT 5 cut(s) 4, 370, 511, 540, 579
MlyI GAGTC 1 cut(s) 393
MmeI TCCRAC 1 cut(s) 665
MnlI CCTC 8 cut(s) 118, 122, 181, 213, 261, 457, 555, 577
MroI TCCGGA 1 cut(s) 184
MseI TTAA 2 cut(s) 18, 63
MspA1I CMGCKG 2 cut(s) 340, 575
MspI CCGG 2 cut(s) 185, 224
MspR9I CCNGG 1 cut(s) 36
MunI CAATTG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 6 cut(s) 53, 273, 425, 584, 608, 617
NcoI CCATGG 1 cut(s) 209
NdeII GATC 2 cut(s) 283, 489
NlaIII CATG 2 cut(s) 213, 407
NlaIV GGNNCC 2 cut(s) 24, 33
PagI TCATGA 1 cut(s) 403
PfeI GAWTC 2 cut(s) 72, 692
PflMI CCANNNNNTGG 1 cut(s) 41
PfoI TCCNGGA 1 cut(s) 34
PkrI GCNGC 5 cut(s) 49, 278, 342, 577, 601
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
PsiI TTATAA 1 cut(s) 375
Psp1406I AACGTT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 24, 33
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 489
PvuII CAGCTG 2 cut(s) 340, 575
SaqAI TTAA 2 cut(s) 18, 63
SatI GCNGC 5 cut(s) 48, 277, 341, 576, 600
Sau3AI GATC 2 cut(s) 283, 489
SchI GAGTC 1 cut(s) 393
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 3 cut(s) 247, 269, 676
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 345
Sse9I AATT 5 cut(s) 4, 370, 511, 540, 579
SspI AATATT 1 cut(s) 709
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 4 cut(s) 110, 155, 349, 432
TaiI ACGT 2 cut(s) 18, 123
TaqI TCGA 3 cut(s) 123, 136, 355
TasI AATT 5 cut(s) 4, 370, 511, 540, 579
TfiI GAWTC 2 cut(s) 72, 692
Tru1I TTAA 2 cut(s) 18, 63
Tru9I TTAA 2 cut(s) 18, 63
TseI GCWGC 5 cut(s) 47, 276, 340, 575, 599
TspDTI ATGAA 3 cut(s) 17, 392, 420
Van91I CCANNNNNTGG 1 cut(s) 41
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.