FvH4_6g26770

Prohibitin-1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001997
Physical Location & Seq
Reverse (-)
20464658 .. 20468634
3977 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26770.t1

Sequence Viewer

Length: 873 bp
ATGAATTTTAAGAACGTTAAGGTTCCTAAGGTCCCGGGAGGTGGTGCATCTTCTGCCTTGATTAAGTTGGGAATCATTGGTGGGCTCGGCTTGTATGGAGTTGCGAACAGTCTCTACAATGTCGAGGGAGGGCACCGGGCCATTGTTTTCAACCGTATAATTGGTGTCAAAGACAAGGTTTATCCGGAGGGGACACACCTTATCATCCCATGGTTTGAGAGGCCGGTCATTTATGATGTTCGGGCCCGACCTCATCTGGTGGAGAGCACTTCTGGCAGCCGTGATCTCCAAATGGTGAAAATCGGGCTTAGAGTTCTTACTCGGCCGATACCAGATCAGTTGCCTACAGTATATCGCACTCTGGGTGAGAATTATAATGAGAGAGTCCTTCCTTCTATCGTTCATGAAACTTTGAAGGCTGTTGTTGCACAGTATAATGCTAGCCAGCTCATTACTCAGAGAGAGGCTGTTAGTAGGGAAATAAGGAAGATCTTGACTGAAAGGGCTACCAATTTCAACATTGCTCTGGATGATGTGTCAATTACCAGCCTCACTTTTGGGAGGGAGTTCACGGCTGCAATTGAGGCCAAACAGGTGGCTGCACAAGAAGCTGAGAGAGCTAAGTTTGTTGTGGAAAAGGCTGAGCAGGACAAAAGAAGTGCTATCATCAGAGCTCAGGGAGAGGCCACAAGTGCCAAGCTGATTGGTGAAGCTATTGCCAACAACCCGGCATTTATCACACTGAGGAAGATTGAAGCTGCTAGAGAAATAGCACATACCATTGCAAATTCTGCAAACAAAGTTTACTTGAGTTCTGATGATCTGCTGCTGAACCTTCAGGACATGAACTTGGAGGTGCACAAGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

291

Amino Acids

32.0

Weight (kDa)

9.54

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 40 - 217 2.3e-31 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 184
AclI AACGTT 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 323
AcsI RAATTY 2 cut(s) 4, 787
AcuI CTGAAG 1 cut(s) 821
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 4 cut(s) 151, 415, 517, 755
AluBI AGCT 7 cut(s) 448, 611, 620, 674, 700, 713, 758
AluI AGCT 7 cut(s) 448, 611, 620, 674, 700, 713, 758
Alw21I GWGCWC 3 cut(s) 269, 676, 861
Alw26I GTCTC 1 cut(s) 116
Alw44I GTGCAC 1 cut(s) 857
Ama87I CYCGRG 1 cut(s) 34
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 6 cut(s) 138, 221, 243, 323, 585, 684
ApaI GGGCCC 1 cut(s) 247
ApaLI GTGCAC 1 cut(s) 857
ApeKI GCWGC 5 cut(s) 276, 575, 599, 758, 826
ApoI RAATTY 2 cut(s) 4, 787
AspS9I GGNCC 4 cut(s) 31, 138, 243, 244
AsuC2I CCSGG 4 cut(s) 35, 36, 137, 728
AsuHPI GGTGA 3 cut(s) 307, 377, 719
AsuNHI GCTAGC 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 27
BaeGI GKGCMC 3 cut(s) 135, 247, 861
BanI GGYRCC 1 cut(s) 132
BanII GRGCYC 3 cut(s) 87, 247, 676
Bbv12I GWGCWC 3 cut(s) 269, 676, 861
BbvI GCAGC 5 cut(s) 288, 562, 586, 745, 813
BceAI ACGGC 2 cut(s) 264, 588
BcnI CCSGG 4 cut(s) 35, 36, 137, 728
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 441, 762
BfmI CTRYAG 1 cut(s) 345
BglII AGATCT 1 cut(s) 489
BisI GCNGC 5 cut(s) 277, 576, 600, 759, 827
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 5 cut(s) 278, 577, 601, 760, 828
Bme1390I CCNGG 4 cut(s) 35, 36, 137, 728
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 4 cut(s) 31, 138, 243, 244
BmiI GGNNCC 4 cut(s) 24, 33, 134, 245
BmrFI CCNGG 4 cut(s) 35, 36, 137, 728
BmsI GCATC 1 cut(s) 56
BmtI GCTAGC 1 cut(s) 444
Bpu10I CCTNAGC 1 cut(s) 675
Bpu1102I GCTNAGC 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 829
BpuMI CCSGG 4 cut(s) 35, 36, 137, 728
BsaJI CCNNGG 2 cut(s) 34, 209
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 223
Bse21I CCTNAGG 1 cut(s) 27
Bse3DI GCAATG 2 cut(s) 519, 780
BseAI TCCGGA 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 34, 209
BseGI GGATG 2 cut(s) 204, 535
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 2 cut(s) 519, 780
BseMII CTCAG 5 cut(s) 470, 603, 633, 689, 734
BseSI GKGCMC 3 cut(s) 135, 247, 861
BseX3I CGGCCG 1 cut(s) 323
BseXI GCAGC 5 cut(s) 288, 562, 586, 745, 813
BsgI GTGCAG 1 cut(s) 585
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 6 cut(s) 140, 223, 245, 325, 587, 686
BshNI GGYRCC 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 326
BsiHKAI GWGCWC 3 cut(s) 269, 676, 861
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 5 cut(s) 35, 136, 185, 224, 728
BslFI GGGAC 2 cut(s) 17, 205
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 2 cut(s) 17, 205
BsnI GGCC 6 cut(s) 140, 223, 245, 325, 587, 686
BsoBI CYCGRG 1 cut(s) 34
Bsp120I GGGCCC 1 cut(s) 243
Bsp1286I GDGCHC 6 cut(s) 87, 135, 247, 269, 676, 861
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 4 cut(s) 283, 334, 489, 820
Bsp1720I GCTNAGC 1 cut(s) 642
Bsp19I CCATGG 1 cut(s) 209
BspANI GGCC 6 cut(s) 140, 223, 245, 325, 587, 686
BspCNI CTCAG 5 cut(s) 469, 604, 634, 688, 735
BspEI TCCGGA 1 cut(s) 184
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 4 cut(s) 24, 33, 134, 245
BspOI GCTAGC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 132
BsrDI GCAATG 2 cut(s) 519, 780
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 34, 209
BssMI GATC 4 cut(s) 283, 334, 489, 820
BssT1I CCWWGG 1 cut(s) 209
Bst4CI ACNGT 4 cut(s) 110, 155, 349, 432
BstAPI GCANNNNNTGC 2 cut(s) 53, 791
BstC8I GCNNGC 2 cut(s) 442, 446
BstDEI CTNAG 8 cut(s) 27, 308, 456, 612, 621, 642, 675, 743
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 204, 535
BstKTI GATC 4 cut(s) 286, 337, 492, 823
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 4 cut(s) 283, 334, 489, 820
BstMCI CGRYCG 1 cut(s) 326
BstMWI GCNNNNNNNGC 8 cut(s) 53, 273, 425, 584, 608, 617, 692, 791
BstSCI CCNGG 4 cut(s) 33, 34, 135, 726
BstSFI CTRYAG 1 cut(s) 345
BstSLI GKGCMC 3 cut(s) 135, 247, 861
BstV1I GCAGC 5 cut(s) 288, 562, 586, 745, 813
BstX2I RGATCY 1 cut(s) 489
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 1 cut(s) 489
BstZI CGGCCG 1 cut(s) 323
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 6 cut(s) 140, 223, 245, 325, 587, 686
BtgI CCRYGG 1 cut(s) 209
BtsCI GGATG 2 cut(s) 204, 535
BtsIMutI CAGTG 1 cut(s) 740
Cac8I GCNNGC 2 cut(s) 442, 446
CciI TCATGA 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 4 cut(s) 31, 138, 243, 244
Cfr9I CCCGGG 1 cut(s) 34
CviAII CATG 3 cut(s) 210, 404, 844
DdeI CTNAG 8 cut(s) 27, 308, 456, 612, 621, 642, 675, 743
DpnI GATC 4 cut(s) 285, 336, 491, 822
DpnII GATC 4 cut(s) 283, 334, 489, 820
EaeI YGGCCR 1 cut(s) 323
EagI CGGCCG 1 cut(s) 323
Ecl136II GAGCTC 1 cut(s) 674
EclXI CGGCCG 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 209
Eco24I GRGCYC 3 cut(s) 87, 247, 676
Eco47I GGWCC 1 cut(s) 31
Eco52I CGGCCG 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 821
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 674
EcoO109I RGGNCCY 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 209
EcoT38I GRGCYC 3 cut(s) 87, 247, 676
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 3 cut(s) 213, 407, 847
FaqI GGGAC 2 cut(s) 17, 205
FatI CATG 3 cut(s) 209, 403, 843
Fnu4HI GCNGC 5 cut(s) 277, 576, 600, 759, 827
FokI GGATG 2 cut(s) 191, 542
FriOI GRGCYC 3 cut(s) 87, 247, 676
Fsp4HI GCNGC 5 cut(s) 277, 576, 600, 759, 827
FspBI CTAG 2 cut(s) 441, 762
GluI GCNGC 5 cut(s) 277, 576, 600, 759, 827
HaeIII GGCC 6 cut(s) 140, 223, 245, 325, 587, 686
HapII CCGG 5 cut(s) 35, 136, 185, 224, 728
Hin1II CATG 3 cut(s) 213, 407, 847
HinfI GANTC 2 cut(s) 72, 384
HpaII CCGG 5 cut(s) 35, 136, 185, 224, 728
HphI GGTGA 3 cut(s) 307, 377, 719
Hpy166II GTNNAC 3 cut(s) 570, 805, 859
Hpy188I TCNGA 3 cut(s) 459, 671, 817
Hpy188III TCNNGA 5 cut(s) 185, 404, 493, 527, 839
Hpy8I GTNNAC 3 cut(s) 570, 805, 859
HpyAV CCTTC 4 cut(s) 398, 402, 409, 845
HpyCH4III ACNGT 4 cut(s) 110, 155, 349, 432
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 7 cut(s) 47, 428, 578, 602, 785, 794, 859
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 273, 425, 584, 608, 617, 692, 791
HpyF3I CTNAG 8 cut(s) 27, 308, 456, 612, 621, 642, 675, 743
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 3 cut(s) 213, 407, 847
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 4 cut(s) 283, 334, 489, 820
Lsp1109I GCAGC 5 cut(s) 288, 562, 586, 745, 813
LweI GCATC 1 cut(s) 56
MaeI CTAG 2 cut(s) 441, 762
MaeII ACGT 1 cut(s) 15
MalI GATC 4 cut(s) 285, 336, 491, 822
MboI GATC 4 cut(s) 283, 334, 489, 820
MboII GAAGA 3 cut(s) 42, 499, 760
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 1 cut(s) 489
MhlI GDGCHC 6 cut(s) 87, 135, 247, 269, 676, 861
MluCI AATT 7 cut(s) 4, 159, 370, 511, 540, 579, 787
MlyI GAGTC 1 cut(s) 393
MroI TCCGGA 1 cut(s) 184
MseI TTAA 3 cut(s) 9, 18, 63
MspI CCGG 5 cut(s) 35, 136, 185, 224, 728
MspR9I CCNGG 4 cut(s) 35, 36, 137, 728
MunI CAATTG 1 cut(s) 579
MwoI GCNNNNNNNGC 8 cut(s) 53, 273, 425, 584, 608, 617, 692, 791
NciI CCSGG 4 cut(s) 35, 36, 137, 728
NcoI CCATGG 1 cut(s) 209
NdeII GATC 4 cut(s) 283, 334, 489, 820
NheI GCTAGC 1 cut(s) 440
NlaIII CATG 3 cut(s) 213, 407, 847
NlaIV GGNNCC 4 cut(s) 24, 33, 134, 245
NmeAIII GCCGAG 2 cut(s) 66, 301
PagI TCATGA 1 cut(s) 403
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 5 cut(s) 278, 577, 601, 760, 828
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
PpuMI RGGWCCY 1 cut(s) 31
PsiI TTATAA 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 676
Psp1406I AACGTT 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 31
PspN4I GGNNCC 4 cut(s) 24, 33, 134, 245
PspOMI GGGCCC 1 cut(s) 243
PspPI GGNCC 4 cut(s) 31, 138, 243, 244
PspPPI RGGWCCY 1 cut(s) 31
PsrI GAACNNNNNNTAC 2 cut(s) 98, 130
PsuI RGATCY 1 cut(s) 489
SacI GAGCTC 1 cut(s) 676
SaqAI TTAA 3 cut(s) 9, 18, 63
SatI GCNGC 5 cut(s) 277, 576, 600, 759, 827
Sau3AI GATC 4 cut(s) 283, 334, 489, 820
Sau96I GGNCC 4 cut(s) 31, 138, 243, 244
SchI GAGTC 1 cut(s) 393
ScrFI CCNGG 4 cut(s) 35, 36, 137, 728
SduI GDGCHC 6 cut(s) 87, 135, 247, 269, 676, 861
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 1 cut(s) 31
SmaI CCCGGG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 808
SmoI CTYRAG 1 cut(s) 808
Sse9I AATT 7 cut(s) 4, 159, 370, 511, 540, 579, 787
SspMI CTAG 2 cut(s) 441, 762
SstI GAGCTC 1 cut(s) 676
StyD4I CCNGG 4 cut(s) 33, 34, 135, 726
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 4 cut(s) 110, 155, 349, 432
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 123
TasI AATT 7 cut(s) 4, 159, 370, 511, 540, 579, 787
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 3 cut(s) 9, 18, 63
Tru9I TTAA 3 cut(s) 9, 18, 63
TscAI CASTG 1 cut(s) 747
TseI GCWGC 5 cut(s) 276, 575, 599, 758, 826
TspDTI ATGAA 4 cut(s) 17, 392, 420, 860
TspMI CCCGGG 1 cut(s) 34
TspRI CASTG 1 cut(s) 747
VneI GTGCAC 1 cut(s) 857
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 2 cut(s) 4, 787
XmaI CCCGGG 1 cut(s) 34
XspI CTAG 2 cut(s) 441, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.