Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001997

Physical Location & Seq

Genomic Coordinates Forward (+)

8841972 .. 8844022

Gene Structure 2051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAATTTTAAGAATGTCAAAGTTCCCAAAGGTCCTGGTGGTGGTGTTATAGCTGCGGTGGTTATTGGGGGGCTCAGTCTTTACGGTGCTACGCACACTCTCTACAATGTCGATGGAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAGGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGCACATCTGGGAGCCGTGATCTCCAGATGGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGACCAATTACCAGAGGTATACCGGTCCCTTGGTGAGAATTACCGCGAGAGAGTCTTGCCTTCTATCATCCACGAGACCTTGAAAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTACTCAGAGAGAGTCGGTGAGTAGAGAAATCAGGAAAATCCTAACTCTAAGAGCCGCAAACTTCCACATTGCACTGGATGATGTGTCCATCACAGGCTTGACATTCGGAAAGGAGTTCACGGCAGCCATAGAAGGAAAGCAGGTCGCTGCTCAAGAGGCCGAACGGGCTAAGTTCATTGTCGAGAAAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGCCGAGGGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATCGCAAACAACCAAGCGTTCTTAACACTGAGGAAGATCGAAGCAGCTAGAGAGATCGCACAGACCATCTCTAGGTCGGCGAACAAGGTTTACTTGAGCTCTAACGATCTGTTGCTTAACCTACAGGCTATGGACCTTGATGTGAAGCCGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019866 GO:0030054 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0055044 GO:0070469 GO:0071944 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

286

Amino Acids

31.64

Weight (kDa)

9.65

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	36 - 211	6.3e-30	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03860 AT1G03860 AT1G03860 AT2G20530 AT2G20530 AT4G28510 AT5G44140
fragaria_vesca	FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_6g26770 FvH4_6g26770
malus_domestica	MD03G1195500.v1.1 MD05G1030500.v1.1 MD11G1212000.v1.1
prunus_persica	Prupe.3G128200_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1
pyrus_communis	pycom05g02170 pycom10g02030 pycom11g18700
rosa_chinensis	RchiOBHm_Chr0c19g0500161 RchiOBHm_Chr2g0128531 RchiOBHm_Chr5g0041011
rosa_laevigata	RLG00000018992 RLG00000034020
rosa_multiflora	Rmu_sc0005650.1_g000009 Rmu_sc0010062.1_g000004 Rmu_sc0033659.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039690 Rroxscaffold_2G00115640 Rroxscaffold_2G00116110
rosa_rugosa	Rorug02G0278000 Rorug05G0189500 Rorug05G0189600
rosa_samantha	Rh2AG329600 Rh2CG316400 Rh2DG355900 Rh5BG280000 Rh5CG312100 Rh5DG288000
rosa_wichuraiana	Rw2G026720 Rw5G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	571
AccI	GTMKAC	2 cut(s)	168, 339
AccII	CGCG	2 cut(s)	366, 660
AciI	CCGC	4 cut(s)	56, 364, 495, 658
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	2 cut(s)	181, 422
AfiI	CCNNNNNNNGG	4 cut(s)	41, 316, 664, 774
AgeI	ACCGGT	1 cut(s)	342
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	6 cut(s)	53, 407, 629, 688, 749, 801
AluI	AGCT	6 cut(s)	53, 407, 629, 688, 749, 801
Alw21I	GWGCWC	3 cut(s)	257, 685, 803
Alw26I	GTCTC	1 cut(s)	389
AoxI	GGCC	2 cut(s)	209, 597
ApeKI	GCWGC	4 cut(s)	53, 563, 587, 746
ApoI	RAATTY	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AsiGI	ACCGGT	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	662
AspS9I	GGNCC	3 cut(s)	32, 345, 835
AsuHPI	GGTGA	4 cut(s)	176, 298, 365, 469
AsuII	TTCGAA	1 cut(s)	204
AvaII	GGWCC	3 cut(s)	32, 345, 835
AxyI	CCTNAGG	1 cut(s)	174
BanII	GRGCYC	2 cut(s)	75, 803
BauI	CACGAG	1 cut(s)	392
Bbv12I	GWGCWC	3 cut(s)	257, 685, 803
BbvI	GCAGC	4 cut(s)	40, 574, 575, 758
BccI	CCATC	4 cut(s)	107, 274, 536, 776
BceAI	ACGGC	2 cut(s)	252, 576
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	3 cut(s)	245, 750, 774
BfmI	CTRYAG	1 cut(s)	824
BfuAI	ACCTGC	1 cut(s)	571
BglI	GCCNNNNNGGC	1 cut(s)	605
BisI	GCNGC	5 cut(s)	54, 495, 564, 588, 747
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	5 cut(s)	55, 496, 565, 589, 748
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	3 cut(s)	32, 345, 835
BmgT120I	GGNCC	3 cut(s)	32, 345, 835
BmiI	GGNNCC	2 cut(s)	266, 347
BmrFI	CCNGG	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	260
Bpu1102I	GCTNAGC	1 cut(s)	684
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	2 cut(s)	576, 817
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	3 cut(s)	197, 349, 663
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 316, 664, 774
Bse118I	RCCGGY	2 cut(s)	141, 342
Bse1I	ACTGG	1 cut(s)	519
Bse21I	CCTNAGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	3 cut(s)	197, 349, 663
BseGI	GGATG	2 cut(s)	387, 523
BseLI	CCNNNNNNNGG	4 cut(s)	41, 316, 664, 774
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	6 cut(s)	88, 165, 431, 458, 698, 722
BseNI	ACTGG	1 cut(s)	519
BseXI	GCAGC	4 cut(s)	40, 574, 575, 758
Bsh1236I	CGCG	2 cut(s)	366, 660
BshFI	GGCC	2 cut(s)	211, 599
BshTI	ACCGGT	1 cut(s)	342
BsiHKAI	GWGCWC	3 cut(s)	257, 685, 803
BsiSI	CCGG	2 cut(s)	142, 343
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	4 cut(s)	41, 316, 664, 774
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	2 cut(s)	211, 599
Bso31I	GGTCTC	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	204
Bsp1286I	GDGCHC	4 cut(s)	75, 257, 685, 803
Bsp143I	GATC	4 cut(s)	271, 738, 756, 808
Bsp1720I	GCTNAGC	1 cut(s)	684
Bsp19I	CCATGG	1 cut(s)	197
BspACI	CCGC	4 cut(s)	56, 364, 495, 658
BspANI	GGCC	2 cut(s)	211, 599
BspCNI	CTCAG	6 cut(s)	87, 166, 430, 457, 697, 723
BspFNI	CGCG	2 cut(s)	366, 660
BspLI	GGNNCC	2 cut(s)	266, 347
BspMI	ACCTGC	1 cut(s)	571
BspT104I	TTCGAA	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	2 cut(s)	141, 342
BsrI	ACTGG	1 cut(s)	519
BssAI	RCCGGY	2 cut(s)	141, 342
BssECI	CCNNGG	3 cut(s)	197, 349, 663
BssMI	GATC	4 cut(s)	271, 738, 756, 808
BssNAI	GTATAC	1 cut(s)	340
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	2 cut(s)	197, 349
Bst1107I	GTATAC	1 cut(s)	340
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	8 cut(s)	74, 174, 417, 444, 488, 609, 684, 731
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	387, 523
BstFNI	CGCG	2 cut(s)	366, 660
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	4 cut(s)	274, 741, 759, 811
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	4 cut(s)	271, 738, 756, 808
BstMWI	GCNNNNNNNGC	4 cut(s)	413, 596, 605, 680
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	824
BstUI	CGCG	2 cut(s)	366, 660
BstV1I	GCAGC	4 cut(s)	40, 574, 575, 758
BstZ17I	GTATAC	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	211, 599
BtgI	CCRYGG	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	387, 523
BtsIMutI	CAGTG	2 cut(s)	512, 728
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	1 cut(s)	430
CfoI	GCGC	1 cut(s)	662
Cfr10I	RCCGGY	2 cut(s)	141, 342
Cfr13I	GGNCC	3 cut(s)	32, 345, 835
Csp6I	GTAC	2 cut(s)	180, 421
CspAI	ACCGGT	1 cut(s)	342
CviAII	CATG	1 cut(s)	198
CviQI	GTAC	2 cut(s)	180, 421
DdeI	CTNAG	8 cut(s)	74, 174, 417, 444, 488, 609, 684, 731
DpnI	GATC	4 cut(s)	273, 740, 758, 810
DpnII	GATC	4 cut(s)	271, 738, 756, 808
Ecl136II	GAGCTC	1 cut(s)	801
Eco130I	CCWWGG	2 cut(s)	197, 349
Eco24I	GRGCYC	2 cut(s)	75, 803
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	3 cut(s)	32, 345, 835
Eco53kI	GAGCTC	1 cut(s)	801
Eco81I	CCTNAGG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	801
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	197, 349
EcoT38I	GRGCYC	2 cut(s)	75, 803
ErhI	CCWWGG	2 cut(s)	197, 349
FaeI	CATG	1 cut(s)	201
FaiI	YATR	8 cut(s)	50, 191, 199, 222, 317, 340, 569, 833
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	1 cut(s)	197
FblI	GTMKAC	2 cut(s)	168, 339
Fnu4HI	GCNGC	5 cut(s)	54, 495, 564, 588, 747
FokI	GGATG	2 cut(s)	374, 530
FriOI	GRGCYC	2 cut(s)	75, 803
Fsp4HI	GCNGC	5 cut(s)	54, 495, 564, 588, 747
FspBI	CTAG	3 cut(s)	245, 750, 774
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	5 cut(s)	54, 495, 564, 588, 747
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	211, 599
HapII	CCGG	2 cut(s)	142, 343
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HinfI	GANTC	3 cut(s)	193, 372, 452
HpaII	CCGG	2 cut(s)	142, 343
HphI	GGTGA	4 cut(s)	176, 298, 365, 469
Hpy166II	GTNNAC	4 cut(s)	169, 340, 558, 793
Hpy188I	TCNGA	2 cut(s)	447, 548
Hpy188III	TCNNGA	4 cut(s)	277, 472, 593, 622
Hpy8I	GTNNAC	4 cut(s)	169, 340, 558, 793
HpyAV	CCTTC	2 cut(s)	390, 566
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	233, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	413, 596, 605, 680
HpyF3I	CTNAG	8 cut(s)	74, 174, 417, 444, 488, 609, 684, 731
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	201
HspAI	GCGC	1 cut(s)	660
Kzo9I	GATC	4 cut(s)	271, 738, 756, 808
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	4 cut(s)	40, 574, 575, 758
MaeI	CTAG	3 cut(s)	245, 750, 774
MaeII	ACGT	1 cut(s)	225
MalI	GATC	4 cut(s)	273, 740, 758, 810
MboI	GATC	4 cut(s)	271, 738, 756, 808
MboII	GAAGA	1 cut(s)	748
MhlI	GDGCHC	4 cut(s)	75, 257, 685, 803
MluCI	AATT	3 cut(s)	4, 326, 358
MlyI	GAGTC	2 cut(s)	381, 461
MnlI	CCTC	6 cut(s)	110, 169, 328, 589, 658, 726
MseI	TTAA	5 cut(s)	9, 138, 285, 725, 819
MspI	CCGG	2 cut(s)	142, 343
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	2 cut(s)	366, 660
MwoI	GCNNNNNNNGC	4 cut(s)	413, 596, 605, 680
NcoI	CCATGG	1 cut(s)	197
NdeII	GATC	4 cut(s)	271, 738, 756, 808
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	2 cut(s)	266, 347
NmeAIII	GCCGAG	1 cut(s)	688
NspV	TTCGAA	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	193
PflFI	GACNNNGTC	1 cut(s)	164
PinAI	ACCGGT	1 cut(s)	342
PkrI	GCNGC	5 cut(s)	55, 496, 565, 589, 748
PleI	GAGTC	2 cut(s)	380, 460
PpsI	GAGTC	2 cut(s)	380, 460
PpuMI	RGGWCCY	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	803
Psp5II	RGGWCCY	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	266, 347
PspPI	GGNCC	3 cut(s)	32, 345, 835
PspPPI	RGGWCCY	1 cut(s)	32
PsrI	GAACNNNNNNTAC	2 cut(s)	776, 808
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	2 cut(s)	181, 422
RsaNI	GTAC	2 cut(s)	180, 421
SacI	GAGCTC	1 cut(s)	803
SaqAI	TTAA	5 cut(s)	9, 138, 285, 725, 819
SatI	GCNGC	5 cut(s)	54, 495, 564, 588, 747
Sau3AI	GATC	4 cut(s)	271, 738, 756, 808
Sau96I	GGNCC	3 cut(s)	32, 345, 835
SchI	GAGTC	2 cut(s)	381, 461
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	4 cut(s)	75, 257, 685, 803
SfcI	CTRYAG	1 cut(s)	824
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	3 cut(s)	32, 345, 835
SmlI	CTYRAG	2 cut(s)	591, 796
SmoI	CTYRAG	2 cut(s)	591, 796
Sse9I	AATT	3 cut(s)	4, 326, 358
SsiI	CCGC	4 cut(s)	56, 364, 495, 658
SspMI	CTAG	3 cut(s)	245, 750, 774
SstI	GAGCTC	1 cut(s)	803
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	2 cut(s)	197, 349
TaaI	ACNGT	1 cut(s)	86
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	5 cut(s)	111, 124, 204, 621, 741
TasI	AATT	3 cut(s)	4, 326, 358
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	5 cut(s)	9, 138, 285, 725, 819
Tru9I	TTAA	5 cut(s)	9, 138, 285, 725, 819
TscAI	CASTG	2 cut(s)	519, 735
TseI	GCWGC	4 cut(s)	53, 563, 587, 746
TspDTI	ATGAA	2 cut(s)	17, 604
TspRI	CASTG	2 cut(s)	519, 735
Tth111I	GACNNNGTC	1 cut(s)	164
VpaK11BI	GGWCC	3 cut(s)	32, 345, 835
XapI	RAATTY	1 cut(s)	4
XmiI	GTMKAC	2 cut(s)	168, 339
XspI	CTAG	3 cut(s)	245, 750, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.