Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001997

Physical Location & Seq

Genomic Coordinates Reverse (-)

12733537 .. 12739268

Gene Structure 5732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G128200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAATTTCAACAACGTTAAGGTTCCCAAAGTGCCAGGCGGTGGTGCAGTTTCTGCTTTACTTAAAGTGGGAATAATTGGTGGGCTTGGCTTGTATGGAGTTGCCAACAGTATATACAATGTCGAGGGAGGGCATAGAGCCATTGTGTTCAACCGTATAATTGGTGTCAAAGACAAGGTTTACCCAGAGGGGACACATCTTATCATTCCCTGGTTTGAGAGGCCAGTCATTTATGATGTCCGTGCACGACCTCATCTGGTGGAGAGTACTTCTGGCAGCCGCGATCTCCAAATGGTCAAAATTGGGCTTCGAGTTCTTACTCGTCCTGTACCAGACCAGCTTCCTACAGTTTATCGTACTCTTGGTGAGAATTATAATGAGAGAGTCCTTCCTTCTATTGTTCATGAAACTTTGAAAGCTGTTGTTGCACAGTATAATGCCAGCCAGCTCATTACTCAGAGAGAGACTGTTAGTAGGGAAATACGAAAGATTTTGACTGAAAGGGCAGCCAATTTCAACATTGCGCTGGATGATGTGTCAATCACCACCCTCACTTTTGGGAAGGAGTTCACCGCTGCAATTGAGGCGAAACAAGTGGCTGCACAAGAAGCTGAGAGAGCTAAATTTGTTGTGGACAAGGCTGAACAAGACAAGAAAAGTGCTATCATCAGAGCAGAGGGTGAGGCCACAAGTGCCAAGCTGATTGGTGAAGCTATTGCGAACAATCCGGCATTTATTACACTGAGGAAGATTGAAGCTGCAAGAGAGATTGCACATACGATCTCAAATTCATCGAACAAAGTTTACTTGAACTCAGATGATCTGTTGTTGAACCTTCAGGAGATGAATTTGGACTTCAACCGGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

291

Amino Acids

32.03

Weight (kDa)

9.35

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03860 AT1G03860 AT1G03860 AT2G20530 AT2G20530 AT4G28510 AT5G44140
fragaria_vesca	FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_6g26770 FvH4_6g26770
malus_domestica	MD03G1195500.v1.1 MD05G1030500.v1.1 MD11G1212000.v1.1
prunus_persica	Prupe.3G128200_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1
pyrus_communis	pycom05g02170 pycom10g02030 pycom11g18700
rosa_chinensis	RchiOBHm_Chr0c19g0500161 RchiOBHm_Chr2g0128531 RchiOBHm_Chr5g0041011
rosa_laevigata	RLG00000018992 RLG00000034020
rosa_multiflora	Rmu_sc0005650.1_g000009 Rmu_sc0010062.1_g000004 Rmu_sc0033659.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039690 Rroxscaffold_2G00115640 Rroxscaffold_2G00116110
rosa_rugosa	Rorug02G0278000 Rorug05G0189500 Rorug05G0189600
rosa_samantha	Rh2AG329600 Rh2CG316400 Rh2DG355900 Rh5BG280000 Rh5CG312100 Rh5DG288000
rosa_wichuraiana	Rw2G026720 Rw5G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccII	CGCG	1 cut(s)	282
AciI	CCGC	3 cut(s)	39, 280, 573
AclI	AACGTT	1 cut(s)	15
AcsI	RAATTY	4 cut(s)	4, 623, 787, 847
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	3 cut(s)	268, 330, 358
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	8 cut(s)	10, 151, 415, 517, 755, 811, 832, 859
AjnI	CCWGG	2 cut(s)	34, 209
AluBI	AGCT	8 cut(s)	340, 419, 448, 611, 620, 700, 713, 758
AluI	AGCT	8 cut(s)	340, 419, 448, 611, 620, 700, 713, 758
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	458
Alw44I	GTGCAC	1 cut(s)	243
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	221, 684
ApaLI	GTGCAC	1 cut(s)	243
ApeKI	GCWGC	5 cut(s)	276, 506, 575, 599, 758
ApoI	RAATTY	4 cut(s)	4, 623, 787, 847
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	526
AsuHPI	GGTGA	5 cut(s)	377, 535, 562, 692, 719
BaeGI	GKGCMC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	5 cut(s)	288, 518, 562, 586, 745
BciT130I	CCWGG	2 cut(s)	36, 211
BcoDI	GTCTC	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	6 cut(s)	277, 280, 507, 576, 600, 759
BlsI	GCNGC	6 cut(s)	278, 281, 508, 577, 601, 760
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	36, 211
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	36, 211
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	861
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	36, 211
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	4 cut(s)	470, 603, 734, 828
BseNI	ACTGG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	5 cut(s)	288, 518, 562, 586, 745
BsgI	GTGCAG	2 cut(s)	66, 585
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	223, 686
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	728, 862
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	223, 686
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	3 cut(s)	283, 780, 820
BspACI	CCGC	3 cut(s)	39, 280, 573
BspANI	GGCC	2 cut(s)	223, 686
BspCNI	CTCAG	4 cut(s)	469, 604, 735, 827
BspFNI	CGCG	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	3 cut(s)	283, 780, 820
Bst2UI	CCWGG	2 cut(s)	36, 211
Bst4CI	ACNGT	5 cut(s)	110, 155, 349, 432, 469
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	442, 446
BstDEI	CTNAG	4 cut(s)	456, 612, 743, 814
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	3 cut(s)	286, 783, 823
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	3 cut(s)	283, 780, 820
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 425, 584, 608, 617, 692
BstNI	CCWGG	2 cut(s)	36, 211
BstSCI	CCNGG	2 cut(s)	34, 209
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	247
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	5 cut(s)	288, 518, 562, 586, 745
BsuRI	GGCC	2 cut(s)	223, 686
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	740
Cac8I	GCNNGC	2 cut(s)	442, 446
CaiI	CAGNNNCTG	1 cut(s)	53
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	1 cut(s)	526
Csp6I	GTAC	3 cut(s)	267, 329, 357
CviAII	CATG	1 cut(s)	404
CviQI	GTAC	3 cut(s)	267, 329, 357
DdeI	CTNAG	4 cut(s)	456, 612, 743, 814
DpnI	GATC	3 cut(s)	285, 782, 822
DpnII	GATC	3 cut(s)	283, 780, 820
Eco57I	CTGAAG	1 cut(s)	821
EcoRII	CCWGG	2 cut(s)	34, 209
FaeI	CATG	1 cut(s)	407
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	403
Fnu4HI	GCNGC	6 cut(s)	277, 280, 507, 576, 600, 759
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	6 cut(s)	277, 280, 507, 576, 600, 759
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	6 cut(s)	277, 280, 507, 576, 600, 759
HaeIII	GGCC	2 cut(s)	223, 686
HapII	CCGG	2 cut(s)	728, 862
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HinfI	GANTC	1 cut(s)	384
HpaII	CCGG	2 cut(s)	728, 862
HphI	GGTGA	5 cut(s)	377, 535, 562, 692, 719
Hpy166II	GTNNAC	5 cut(s)	181, 245, 570, 634, 805
Hpy188I	TCNGA	3 cut(s)	459, 671, 817
Hpy188III	TCNNGA	2 cut(s)	404, 839
Hpy8I	GTNNAC	5 cut(s)	181, 245, 570, 634, 805
HpyAV	CCTTC	4 cut(s)	398, 402, 556, 845
HpyCH4III	ACNGT	5 cut(s)	110, 155, 349, 432, 469
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	7 cut(s)	47, 245, 428, 578, 602, 761, 773
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 425, 584, 608, 617, 692
HpyF3I	CTNAG	4 cut(s)	456, 612, 743, 814
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	1 cut(s)	524
Kzo9I	GATC	3 cut(s)	283, 780, 820
Lsp1109I	GCAGC	5 cut(s)	288, 518, 562, 586, 745
MaeII	ACGT	1 cut(s)	15
MalI	GATC	3 cut(s)	285, 782, 822
MboI	GATC	3 cut(s)	283, 780, 820
MboII	GAAGA	1 cut(s)	760
MfeI	CAATTG	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	2 cut(s)	18, 63
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	2 cut(s)	728, 862
MspR9I	CCNGG	2 cut(s)	36, 211
MunI	CAATTG	1 cut(s)	579
MvaI	CCWGG	2 cut(s)	36, 211
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	6 cut(s)	53, 425, 584, 608, 617, 692
NdeII	GATC	3 cut(s)	283, 780, 820
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	1 cut(s)	24
PagI	TCATGA	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	566
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	6 cut(s)	278, 281, 508, 577, 601, 760
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	375
Psp1406I	AACGTT	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	34, 209
PspGI	CCWGG	2 cut(s)	34, 209
PspN4I	GGNNCC	1 cut(s)	24
PsrI	GAACNNNNNNTAC	2 cut(s)	788, 820
PstNI	CAGNNNCTG	1 cut(s)	53
RsaI	GTAC	3 cut(s)	268, 330, 358
RsaNI	GTAC	3 cut(s)	267, 329, 357
SaqAI	TTAA	2 cut(s)	18, 63
SatI	GCNGC	6 cut(s)	277, 280, 507, 576, 600, 759
Sau3AI	GATC	3 cut(s)	283, 780, 820
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	2 cut(s)	36, 211
SduI	GDGCHC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	345
SsiI	CCGC	3 cut(s)	39, 280, 573
StyD4I	CCNGG	2 cut(s)	34, 209
TaaI	ACNGT	5 cut(s)	110, 155, 349, 432, 469
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	123, 310, 794
TatI	WGTACW	1 cut(s)	266
TauI	GCSGC	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	18, 63
Tru9I	TTAA	2 cut(s)	18, 63
TscAI	CASTG	1 cut(s)	747
TseI	GCWGC	5 cut(s)	276, 506, 575, 599, 758
TspDTI	ATGAA	5 cut(s)	17, 392, 420, 780, 860
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	747
Van91I	CCANNNNNTGG	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	243
XapI	RAATTY	4 cut(s)	4, 623, 787, 847
XmnI	GAANNNNTTC	1 cut(s)	566
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.