Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001997

Physical Location & Seq

Genomic Coordinates Forward (+)

42030685 .. 42035011

Gene Structure 4327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAATTTCAAGAACGTTAAGGTTCCTAAGGTTCCAGGAGGTGGTGCAGCTTCTGCCTTGATTAAGGTGGGAATCATTGGTGGGCTTGGCTTGTATGGAGTTGCCAACAGTCTATACAATGTCGAGGGAGGGCATCGAGCCATTGTTTTCAACCGTATCATTGGTGTCAAAGACAAGGTTTATCCGGAGGGGACACACCTTATCATCCCATGGTTTGAGAGGCCGGTTATTTATGATGTTCGTGCCCGACCTCATCTGGTGGAGAGCACTTCTGGCAGCCGTGATCTCCAAATGGTGAAAATCGGGCTTAGAGTTCTTACTCGTCCAATATCAGACCAGCTGCCTACAGTATATCGAACTCTTGGTGAGAATTATAATGAGAGAGTCCTTCCTTCCATCGTTCATGAAACTTTGAAGGCTGTTGTTGCACAGTATAATGCCAGCCAGCTCATTACTCAGAGAGAGGCTGTTAGTAGGGAAATAAGGAAGATCTTGACTGAAAGGGCTACCAATTTCAACATTGCTTTGGATGATGTGTCAATTACCAGCCTTACTTTTGGGAGGGAGTTCACAGCTGCAATTGAGGCAAAACAGGTGGCTGCACAAGAAGCTGAGAGAGCTAAGTTTGTTGTGGAAAAGGCTGAGCAGGACAAGAGAAGTGCTATCATCAGAGCACAGGGTGAGGCCACAAGTGCCAAGCTGATTGGTGAAGCTATTGCGAACAACCCGGCATTCATCACACTGAGGAAGATTGAAGCTGCTAGAGAAATAGCACATACCATGGCAAATTCATCAAACAAAGTTTACTTGAGTTCCGATGATCTGCTGCTGAACCTTCAGGACTTGAACTTGGACGTGAGCAAGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

290

Amino Acids

31.91

Weight (kDa)

9.54

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	40 - 217	1.2e-30	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03860 AT1G03860 AT1G03860 AT2G20530 AT2G20530 AT4G28510 AT5G44140
fragaria_vesca	FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_3g23290 FvH4_6g26770 FvH4_6g26770
malus_domestica	MD03G1195500.v1.1 MD05G1030500.v1.1 MD11G1212000.v1.1
prunus_persica	Prupe.3G128200_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1 Prupe.4G220500_v2.0.a1
pyrus_communis	pycom05g02170 pycom10g02030 pycom11g18700
rosa_chinensis	RchiOBHm_Chr0c19g0500161 RchiOBHm_Chr2g0128531 RchiOBHm_Chr5g0041011
rosa_laevigata	RLG00000018992 RLG00000034020
rosa_multiflora	Rmu_sc0005650.1_g000009 Rmu_sc0010062.1_g000004 Rmu_sc0033659.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039690 Rroxscaffold_2G00115640 Rroxscaffold_2G00116110
rosa_rugosa	Rorug02G0278000 Rorug05G0189500 Rorug05G0189600
rosa_samantha	Rh2AG329600 Rh2CG316400 Rh2DG355900 Rh5BG280000 Rh5CG312100 Rh5DG288000
rosa_wichuraiana	Rw2G026720 Rw5G025880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	184
AclI	AACGTT	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	4, 787
AcuI	CTGAAG	1 cut(s)	821
AdeI	CACNNNGTG	1 cut(s)	680
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	6 cut(s)	10, 151, 415, 517, 755, 847
AjiI	CACGTC	1 cut(s)	856
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	9 cut(s)	50, 340, 448, 575, 611, 620, 700, 713, 758
AluI	AGCT	9 cut(s)	50, 340, 448, 575, 611, 620, 700, 713, 758
Alw21I	GWGCWC	2 cut(s)	269, 676
AlwNI	CAGNNNCTG	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	221, 684
ApeKI	GCWGC	7 cut(s)	47, 276, 340, 575, 599, 758, 826
ApoI	RAATTY	2 cut(s)	4, 787
AsuC2I	CCSGG	1 cut(s)	728
AsuHPI	GGTGA	4 cut(s)	307, 377, 692, 719
AxyI	CCTNAGG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	247
Bbv12I	GWGCWC	2 cut(s)	269, 676
BbvI	GCAGC	7 cut(s)	59, 288, 327, 562, 586, 745, 813
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	728
BfaI	CTAG	1 cut(s)	762
BfmI	CTRYAG	1 cut(s)	345
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	7 cut(s)	48, 277, 341, 576, 600, 759, 827
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	7 cut(s)	49, 278, 342, 577, 601, 760, 828
Bme1390I	CCNGG	2 cut(s)	36, 728
BmgBI	CACGTC	1 cut(s)	856
BmiI	GGNNCC	2 cut(s)	24, 33
BmrFI	CCNGG	2 cut(s)	36, 728
BmsI	GCATC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	829
BpuMI	CCSGG	1 cut(s)	728
BsaJI	CCNNGG	2 cut(s)	209, 780
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	223
Bse21I	CCTNAGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	209, 780
BseGI	GGATG	2 cut(s)	204, 535
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	4 cut(s)	470, 603, 633, 734
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	7 cut(s)	59, 288, 327, 562, 586, 745, 813
BsgI	GTGCAG	2 cut(s)	66, 585
BshFI	GGCC	2 cut(s)	223, 686
BsiHKAI	GWGCWC	2 cut(s)	269, 676
BsiSI	CCGG	3 cut(s)	185, 224, 728
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	2 cut(s)	223, 686
Bsp1286I	GDGCHC	3 cut(s)	247, 269, 676
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	283, 489, 820
Bsp1720I	GCTNAGC	1 cut(s)	642
Bsp19I	CCATGG	2 cut(s)	209, 780
BspANI	GGCC	2 cut(s)	223, 686
BspCNI	CTCAG	4 cut(s)	469, 604, 634, 735
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	24, 33
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	209, 780
BssMI	GATC	3 cut(s)	283, 489, 820
BssT1I	CCWWGG	2 cut(s)	209, 780
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	4 cut(s)	110, 155, 349, 432
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	442, 446
BstDEI	CTNAG	7 cut(s)	27, 308, 456, 612, 621, 642, 743
BstDSI	CCRYGG	2 cut(s)	209, 780
BstF5I	GGATG	2 cut(s)	204, 535
BstKTI	GATC	3 cut(s)	286, 492, 823
BstMBI	GATC	3 cut(s)	283, 489, 820
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 273, 425, 584, 608, 617, 692
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	34, 726
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	7 cut(s)	59, 288, 327, 562, 586, 745, 813
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	223, 686
BtgI	CCRYGG	2 cut(s)	209, 780
BtrI	CACGTC	1 cut(s)	856
BtsCI	GGATG	2 cut(s)	204, 535
BtsIMutI	CAGTG	1 cut(s)	740
Cac8I	GCNNGC	2 cut(s)	442, 446
CaiI	CAGNNNCTG	1 cut(s)	53
CciI	TCATGA	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CviAII	CATG	3 cut(s)	210, 404, 781
DdeI	CTNAG	7 cut(s)	27, 308, 456, 612, 621, 642, 743
DpnI	GATC	3 cut(s)	285, 491, 822
DpnII	GATC	3 cut(s)	283, 489, 820
DraIII	CACNNNGTG	1 cut(s)	680
Eco130I	CCWWGG	2 cut(s)	209, 780
Eco57I	CTGAAG	1 cut(s)	821
Eco81I	CCTNAGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	209, 780
ErhI	CCWWGG	2 cut(s)	209, 780
FaeI	CATG	3 cut(s)	213, 407, 784
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	3 cut(s)	209, 403, 780
Fnu4HI	GCNGC	7 cut(s)	48, 277, 341, 576, 600, 759, 827
FokI	GGATG	2 cut(s)	191, 542
Fsp4HI	GCNGC	7 cut(s)	48, 277, 341, 576, 600, 759, 827
FspBI	CTAG	1 cut(s)	762
GluI	GCNGC	7 cut(s)	48, 277, 341, 576, 600, 759, 827
HaeIII	GGCC	2 cut(s)	223, 686
HapII	CCGG	3 cut(s)	185, 224, 728
Hin1II	CATG	3 cut(s)	213, 407, 784
HinfI	GANTC	2 cut(s)	72, 384
HpaII	CCGG	3 cut(s)	185, 224, 728
HphI	GGTGA	4 cut(s)	307, 377, 692, 719
Hpy166II	GTNNAC	2 cut(s)	570, 805
Hpy188I	TCNGA	4 cut(s)	334, 459, 671, 817
Hpy188III	TCNNGA	5 cut(s)	10, 185, 404, 493, 839
Hpy8I	GTNNAC	2 cut(s)	570, 805
HpyAV	CCTTC	4 cut(s)	398, 402, 409, 845
HpyCH4III	ACNGT	4 cut(s)	110, 155, 349, 432
HpyCH4IV	ACGT	2 cut(s)	15, 855
HpyCH4V	TGCA	4 cut(s)	47, 428, 578, 602
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 273, 425, 584, 608, 617, 692
HpyF3I	CTNAG	7 cut(s)	27, 308, 456, 612, 621, 642, 743
HpySE526I	ACGT	2 cut(s)	15, 855
Hsp92II	CATG	3 cut(s)	213, 407, 784
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	283, 489, 820
Lsp1109I	GCAGC	7 cut(s)	59, 288, 327, 562, 586, 745, 813
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	2 cut(s)	15, 855
MalI	GATC	3 cut(s)	285, 491, 822
MboI	GATC	3 cut(s)	283, 489, 820
MboII	GAAGA	2 cut(s)	499, 760
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	3 cut(s)	247, 269, 676
MluCI	AATT	6 cut(s)	4, 370, 511, 540, 579, 787
MlyI	GAGTC	1 cut(s)	393
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	2 cut(s)	18, 63
MspA1I	CMGCKG	2 cut(s)	340, 575
MspI	CCGG	3 cut(s)	185, 224, 728
MspR9I	CCNGG	2 cut(s)	36, 728
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	7 cut(s)	53, 273, 425, 584, 608, 617, 692
NciI	CCSGG	1 cut(s)	728
NcoI	CCATGG	2 cut(s)	209, 780
NdeII	GATC	3 cut(s)	283, 489, 820
NlaIII	CATG	3 cut(s)	213, 407, 784
NlaIV	GGNNCC	2 cut(s)	24, 33
PagI	TCATGA	1 cut(s)	403
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	34
PkrI	GCNGC	7 cut(s)	49, 278, 342, 577, 601, 760, 828
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	375
Psp1406I	AACGTT	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	24, 33
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	489
PvuII	CAGCTG	2 cut(s)	340, 575
SaqAI	TTAA	2 cut(s)	18, 63
SatI	GCNGC	7 cut(s)	48, 277, 341, 576, 600, 759, 827
Sau3AI	GATC	3 cut(s)	283, 489, 820
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	2 cut(s)	36, 728
SduI	GDGCHC	3 cut(s)	247, 269, 676
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	808
SmoI	CTYRAG	1 cut(s)	808
Sse9I	AATT	6 cut(s)	4, 370, 511, 540, 579, 787
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	2 cut(s)	34, 726
StyI	CCWWGG	2 cut(s)	209, 780
TaaI	ACNGT	4 cut(s)	110, 155, 349, 432
TaiI	ACGT	2 cut(s)	18, 858
TaqI	TCGA	3 cut(s)	123, 136, 355
TasI	AATT	6 cut(s)	4, 370, 511, 540, 579, 787
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	18, 63
Tru9I	TTAA	2 cut(s)	18, 63
TscAI	CASTG	1 cut(s)	747
TseI	GCWGC	7 cut(s)	47, 276, 340, 575, 599, 758, 826
TspDTI	ATGAA	5 cut(s)	17, 392, 420, 724, 780
TspRI	CASTG	1 cut(s)	747
Van91I	CCANNNNNTGG	1 cut(s)	41
XapI	RAATTY	2 cut(s)	4, 787
XspI	CTAG	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.