AT1G05860

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001489
Physical Location & Seq
Forward (+)
1768986 .. 1771286
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05860.1

Sequence Viewer

Length: 843 bp
ATGGCGTCAGCTTCCAAGCAAAACCCTTCTTCTTCCAAACCTCCTAGGCATCCATCTCCGATCATTGCTTCAACCCCCTCGAAATCCGGTGTATTGGAGGAATCCCAATTTCGAAACCCTAATAACCCGTCGACGTCATCGAATTCACCGATTTCGATGGCGGTGGAGGATCAGATCCTGGGAAATTCCAATCACCTCACTCGCCCGGAGCTTCTCCGACGCAGATCGCACAACCTGAAGCAGCTCTCTAGATGCTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCACAACATAGATATTATAGCTGGAACTATGGTGTTAGTCCTTTCAAAGATGAGAATTATCACCAAAACAAGAGACGTAAGGTTGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGATAATGATAATAACAACAACGATGGCGTTAAGGCTGGTAATTGTGTTGCTTGTGGTAGTGGATGCAAATCTAAGGCCATGGCACTCACCAATTACTGTCAGCTTCATATCCTCATGGATAAAAAGCAGAAGCTTTATACGTCTTGTACTTACGTCAATAAAAGAGCTCAGTCGAAAGCAATAACTTGTCCAAAACCAACTCTTGCATCGACTGTTCCTGCCCTCTGTAATGTGCACTTCCAGAAAGCCCAAAAGGATGTTGCTCGAGCTTTGAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAGGCCTCCCCCGAAACTCCATGACATAGTAGCTGCATTTGTGCATCATATTCAAGCAAAAAGAAAAGATCCACGAAAAGAGGGCAAATTGAAAAGCTTAGTAAAAGAAGAACTTACAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

280

Amino Acids

31.18

Weight (kDa)

9.61

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 154 - 218 3.2e-15 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 131
AciI CCGC 2 cut(s) 161, 411
AclWI GGATC 4 cut(s) 169, 177, 294, 782
AcsI RAATTY 2 cut(s) 142, 184
AcuI CTGAAG 2 cut(s) 257, 696
AcyI GRCGYC 2 cut(s) 5, 134
AfaI GTAC 1 cut(s) 562
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 7 cut(s) 72, 340, 380, 404, 688, 773, 811
AjnI CCWGG 1 cut(s) 177
Alw21I GWGCWC 2 cut(s) 583, 651
Alw26I GTCTC 2 cut(s) 255, 361
Alw44I GTGCAC 1 cut(s) 647
AlwI GGATC 4 cut(s) 169, 177, 294, 782
AlwNI CAGNNNCTG 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 678
AoxI GGCC 2 cut(s) 489, 722
ApaLI GTGCAC 1 cut(s) 647
ApeKI GCWGC 2 cut(s) 241, 752
ApoI RAATTY 2 cut(s) 142, 184
AspA2I CCTAGG 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 4 cut(s) 138, 185, 347, 493
AsuII TTCGAA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 678
AvrII CCTAGG 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 651
BanII GRGCYC 2 cut(s) 277, 583
Bbv12I GWGCWC 2 cut(s) 583, 651
BbvI GCAGC 2 cut(s) 253, 739
BccI CCATC 3 cut(s) 61, 151, 431
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 255, 361
BfaI CTAG 2 cut(s) 45, 249
BfmI CTRYAG 1 cut(s) 256
BisI GCNGC 2 cut(s) 242, 753
BlnI CCTAGG 1 cut(s) 44
BlsI GCNGC 2 cut(s) 243, 754
Bme1390I CCNGG 2 cut(s) 179, 206
BmeT110I CYCGRG 1 cut(s) 678
BmrFI CCNGG 2 cut(s) 179, 206
BmrI ACTGGG 2 cut(s) 280, 399
BmsI GCATC 6 cut(s) 58, 242, 467, 629, 682, 772
BmuI ACTGGG 2 cut(s) 280, 399
Bpu14I TTCGAA 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 481
BsaHI GRCGYC 2 cut(s) 5, 134
BsaI GGTCTC 1 cut(s) 255
BsaJI CCNNGG 3 cut(s) 44, 178, 492
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 2 cut(s) 275, 394
Bse3DI GCAATG 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 481
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 44, 178, 492
BseGI GGATG 5 cut(s) 49, 400, 482, 676, 697
BseJI GATNNNNATC 1 cut(s) 481
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 2 cut(s) 275, 394
BseSI GKGCMC 1 cut(s) 651
BseXI GCAGC 2 cut(s) 253, 739
BshFI GGCC 2 cut(s) 491, 724
BsiHKAI GWGCWC 2 cut(s) 583, 651
BsiHKCI CYCGRG 1 cut(s) 678
BsiSI CCGG 2 cut(s) 87, 206
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 2 cut(s) 255, 361
BsmBI CGTCTC 1 cut(s) 361
BsnI GGCC 2 cut(s) 491, 724
Bso31I GGTCTC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 678
Bsp119I TTCGAA 1 cut(s) 112
Bsp1286I GDGCHC 3 cut(s) 277, 583, 651
Bsp143I GATC 6 cut(s) 60, 169, 174, 224, 286, 787
Bsp19I CCATGG 1 cut(s) 492
BspACI CCGC 2 cut(s) 161, 411
BspANI GGCC 2 cut(s) 491, 724
BspCNI CTCAG 1 cut(s) 595
BspPI GGATC 4 cut(s) 169, 177, 294, 782
BspT104I TTCGAA 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 2 cut(s) 275, 394
BssECI CCNNGG 3 cut(s) 44, 178, 492
BssMI GATC 6 cut(s) 60, 169, 174, 224, 286, 787
BssNI GRCGYC 2 cut(s) 5, 134
BssT1I CCWWGG 2 cut(s) 44, 492
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 512, 628
BstACI GRCGYC 2 cut(s) 5, 134
BstBI TTCGAA 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 718, 722
BstDEI CTNAG 3 cut(s) 486, 582, 817
BstDSI CCRYGG 1 cut(s) 492
BstF5I GGATG 5 cut(s) 49, 400, 482, 676, 697
BstKTI GATC 6 cut(s) 63, 172, 177, 227, 289, 790
BstMAI GTCTC 2 cut(s) 255, 361
BstMBI GATC 6 cut(s) 60, 169, 174, 224, 286, 787
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 177, 204
BstSFI CTRYAG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 651
BstV1I GCAGC 2 cut(s) 253, 739
BstX2I RGATCY 3 cut(s) 174, 286, 787
BstYI RGATCY 3 cut(s) 174, 286, 787
BsuRI GGCC 2 cut(s) 491, 724
BtgI CCRYGG 1 cut(s) 492
BtsCI GGATG 5 cut(s) 49, 400, 482, 676, 697
Cac8I GCNNGC 2 cut(s) 718, 722
CaiI CAGNNNCTG 1 cut(s) 178
CseI GACGC 1 cut(s) 228
Csp6I GTAC 1 cut(s) 561
CviAII CATG 3 cut(s) 493, 529, 740
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 3 cut(s) 486, 582, 817
DpnI GATC 6 cut(s) 62, 171, 176, 226, 288, 789
DpnII GATC 6 cut(s) 60, 169, 174, 224, 286, 787
Ecl136II GAGCTC 1 cut(s) 581
Eco130I CCWWGG 2 cut(s) 44, 492
Eco147I AGGCCT 1 cut(s) 724
Eco24I GRGCYC 2 cut(s) 277, 583
Eco31I GGTCTC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 581
Eco57I CTGAAG 2 cut(s) 257, 696
Eco88I CYCGRG 1 cut(s) 678
EcoICRI GAGCTC 1 cut(s) 581
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 2 cut(s) 44, 492
EcoT38I GRGCYC 2 cut(s) 277, 583
ErhI CCWWGG 2 cut(s) 44, 492
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 3 cut(s) 496, 532, 743
FalI AAGNNNNNCTT 1 cut(s) 816
FatI CATG 3 cut(s) 492, 528, 739
FblI GTMKAC 1 cut(s) 131
Fnu4HI GCNGC 2 cut(s) 242, 753
FokI GGATG 5 cut(s) 36, 407, 489, 683, 704
FriOI GRGCYC 2 cut(s) 277, 583
Fsp4HI GCNGC 2 cut(s) 242, 753
FspBI CTAG 2 cut(s) 45, 249
GluI GCNGC 2 cut(s) 242, 753
HaeIII GGCC 2 cut(s) 491, 724
HapII CCGG 2 cut(s) 87, 206
HgaI GACGC 1 cut(s) 228
Hin1I GRCGYC 2 cut(s) 5, 134
Hin1II CATG 3 cut(s) 496, 532, 743
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 2 cut(s) 545, 814
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 87, 206
HphI GGTGA 4 cut(s) 138, 185, 347, 493
Hpy166II GTNNAC 2 cut(s) 132, 649
Hpy188I TCNGA 3 cut(s) 60, 174, 218
Hpy188III TCNNGA 2 cut(s) 249, 655
Hpy8I GTNNAC 2 cut(s) 132, 649
Hpy99I CGWCG 3 cut(s) 133, 136, 222
HpyAV CCTTC 4 cut(s) 36, 374, 398, 682
HpyCH4III ACNGT 2 cut(s) 512, 628
HpyCH4IV ACGT 4 cut(s) 134, 370, 554, 567
HpyCH4V TGCA 5 cut(s) 480, 620, 649, 755, 763
HpyF3I CTNAG 3 cut(s) 486, 582, 817
HpySE526I ACGT 4 cut(s) 134, 370, 554, 567
Hsp92I GRCGYC 2 cut(s) 5, 134
Hsp92II CATG 3 cut(s) 496, 532, 743
Kzo9I GATC 6 cut(s) 60, 169, 174, 224, 286, 787
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 2 cut(s) 253, 739
LweI GCATC 6 cut(s) 58, 242, 467, 629, 682, 772
MaeI CTAG 2 cut(s) 45, 249
MaeII ACGT 4 cut(s) 134, 370, 554, 567
MalI GATC 6 cut(s) 62, 171, 176, 226, 288, 789
MboI GATC 6 cut(s) 60, 169, 174, 224, 286, 787
MboII GAAGA 4 cut(s) 21, 24, 702, 839
MflI RGATCY 3 cut(s) 174, 286, 787
MhlI GDGCHC 3 cut(s) 277, 583, 651
MluCI AATT 8 cut(s) 107, 142, 184, 349, 399, 454, 505, 806
MmeI TCCRAC 1 cut(s) 241
MseI TTAA 1 cut(s) 444
MspI CCGG 2 cut(s) 87, 206
MspR9I CCNGG 2 cut(s) 179, 206
MvaI CCWGG 1 cut(s) 179
NciI CCSGG 1 cut(s) 206
NcoI CCATGG 1 cut(s) 492
NdeII GATC 6 cut(s) 60, 169, 174, 224, 286, 787
NlaIII CATG 3 cut(s) 496, 532, 743
NspV TTCGAA 1 cut(s) 112
PaeR7I CTCGAG 1 cut(s) 678
PceI AGGCCT 1 cut(s) 724
PcsI WCGNNNNNNNCGW 2 cut(s) 137, 146
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 2 cut(s) 243, 754
Psp124BI GAGCTC 1 cut(s) 583
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspXI VCTCGAGB 1 cut(s) 678
PstNI CAGNNNCTG 1 cut(s) 178
PsuI RGATCY 3 cut(s) 174, 286, 787
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
SacI GAGCTC 1 cut(s) 583
SalI GTCGAC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 2 cut(s) 242, 753
Sau3AI GATC 6 cut(s) 60, 169, 174, 224, 286, 787
ScrFI CCNGG 2 cut(s) 179, 206
SduI GDGCHC 3 cut(s) 277, 583, 651
SfaNI GCATC 6 cut(s) 58, 242, 467, 629, 682, 772
SfcI CTRYAG 1 cut(s) 256
Sfr274I CTCGAG 1 cut(s) 678
SfuI TTCGAA 1 cut(s) 112
SgrDI CGTCGACG 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 678
SmlI CTYRAG 2 cut(s) 290, 678
SmoI CTYRAG 2 cut(s) 290, 678
Sse9I AATT 8 cut(s) 107, 142, 184, 349, 399, 454, 505, 806
SseBI AGGCCT 1 cut(s) 724
SsiI CCGC 2 cut(s) 161, 411
SspMI CTAG 2 cut(s) 45, 249
SstI GAGCTC 1 cut(s) 583
StuI AGGCCT 1 cut(s) 724
StyD4I CCNGG 2 cut(s) 177, 204
StyI CCWWGG 2 cut(s) 44, 492
TaaI ACNGT 2 cut(s) 512, 628
TaiI ACGT 4 cut(s) 137, 373, 557, 570
TaqI TCGA 8 cut(s) 80, 112, 131, 140, 155, 587, 623, 679
TasI AATT 8 cut(s) 107, 142, 184, 349, 399, 454, 505, 806
TatI WGTACW 1 cut(s) 560
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TseI GCWGC 2 cut(s) 241, 752
TspDTI ATGAA 2 cut(s) 411, 509
VneI GTGCAC 1 cut(s) 647
XapI RAATTY 2 cut(s) 142, 184
XbaI TCTAGA 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 678
XmaJI CCTAGG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 131
XspI CTAG 2 cut(s) 45, 249
ZraI GACGTC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.