Rw0G018640

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00836
OG0001489
Physical Location & Seq
Reverse (-)
23850 .. 26495
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018640.1

Sequence Viewer

Length: 720 bp
ATGGCTGCCTCTGGTTCCAAGAACAACCACAACCACCCTCCTCCCTCTTCTTCCAAGCCTCCCAAGAACCAGATCGTTATCGCCGACCTCCAAGTCCCAAACCCTGGCCCCTCCACCTCCTCCATCACTCCTTCCCGTGAAGACTTGGTCCTCTCACGCGCCTCCCACCTCACGCGCCAAGAGCTCCTCCGCCGCCGCTCCCACAACCTCAAGGAGCTGACGAAATGCTACAAAGACCACTACTGGGGGTTCATGGAGCACCTCAAGATCCAGTACAGGGAGTACTACTGGAAGTACGGTGTCAGCCCTTTCAAAGAAGACAACAACGCCACCGCCACCAATAACAACAACAATGGGGGCGCTGCTGTTGAAGGCAGTGATGACAACCACAATAACAATCGCCGCTGCGCTTCCGTCGGCTGTAAGTTGAAGGCCATGGCCTTAACCAGCTTCTGCCACCTCCACATTCTTTCGGATTCGAAGCAGAGGCTCTACAAGGCTTGCAATTATGCAGGGACCTATAACATGTGGGAAGCCAATACTGAGATCCACTACCCCTCTCTTTGTACTGTCCACTTCCAAAAGGCTCAGAAACATGTAACCAGGGCCTTGCGGAAGGCAGGGCTTAATTGGCAGTATGTACGCCAAATCCAATCCACACGAAGAGCCGCCGAAAGGAAAAAAAGTAAAGTTGCAATAAAGGAAGAAACTGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

239

Amino Acids

27.24

Weight (kDa)

9.68

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 136 - 192 5.2e-11 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 198
AccII CGCG 2 cut(s) 159, 175
AciI CCGC 7 cut(s) 190, 193, 196, 333, 403, 613, 669
AclWI GGATC 2 cut(s) 262, 541
AfaI GTAC 5 cut(s) 275, 284, 296, 568, 642
AfiI CCNNNNNNNGG 4 cut(s) 104, 244, 277, 675
AflIII ACRYGT 2 cut(s) 525, 595
AgsI TTSAA 3 cut(s) 313, 371, 430
AjnI CCWGG 2 cut(s) 103, 602
AluBI AGCT 3 cut(s) 184, 217, 450
AluI AGCT 3 cut(s) 184, 217, 450
Alw21I GWGCWC 2 cut(s) 186, 261
AlwI GGATC 2 cut(s) 262, 541
AlwNI CAGNNNCTG 1 cut(s) 453
AoxI GGCC 4 cut(s) 106, 432, 438, 606
ApeKI GCWGC 3 cut(s) 5, 362, 405
AspLEI GCGC 4 cut(s) 161, 177, 362, 410
AspS9I GGNCC 4 cut(s) 107, 148, 516, 606
AsuII TTCGAA 1 cut(s) 479
AvaII GGWCC 2 cut(s) 148, 516
BanII GRGCYC 1 cut(s) 186
BbsI GAAGAC 2 cut(s) 147, 324
Bbv12I GWGCWC 2 cut(s) 186, 261
BbvI GCAGC 2 cut(s) 349, 392
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 105, 604
BfoI RGCGCY 1 cut(s) 363
BisI GCNGC 7 cut(s) 6, 193, 196, 363, 403, 406, 669
BlsI GCNGC 7 cut(s) 7, 194, 197, 364, 404, 407, 670
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 105, 604
Bme18I GGWCC 2 cut(s) 148, 516
BmgT120I GGNCC 4 cut(s) 107, 148, 516, 606
BmiI GGNNCC 3 cut(s) 16, 109, 517
BmrFI CCNGG 2 cut(s) 105, 604
BmrI ACTGGG 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 2 cut(s) 147, 324
Bpu14I TTCGAA 1 cut(s) 479
BpuEI CTTGAG 2 cut(s) 194, 248
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 103, 435, 603
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 244, 277, 675
Bse1I ACTGG 3 cut(s) 248, 271, 293
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 2 cut(s) 105, 604
BseDI CCNNGG 3 cut(s) 103, 435, 603
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 4 cut(s) 104, 244, 277, 675
BseMII CTCAG 2 cut(s) 534, 602
BseNI ACTGG 3 cut(s) 248, 271, 293
BseRI GAGGAG 3 cut(s) 30, 109, 176
BseXI GCAGC 2 cut(s) 349, 392
Bsh1236I CGCG 2 cut(s) 159, 175
BshFI GGCC 4 cut(s) 108, 434, 440, 608
BsiHKAI GWGCWC 2 cut(s) 186, 261
BslFI GGGAC 2 cut(s) 80, 529
BslI CCNNNNNNNGG 4 cut(s) 104, 244, 277, 675
BsmFI GGGAC 2 cut(s) 80, 529
BsnI GGCC 4 cut(s) 108, 434, 440, 608
Bsp119I TTCGAA 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 186, 261
Bsp143I GATC 3 cut(s) 72, 267, 546
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 7 cut(s) 190, 193, 196, 333, 403, 613, 669
BspANI GGCC 4 cut(s) 108, 434, 440, 608
BspCNI CTCAG 2 cut(s) 535, 601
BspFNI CGCG 2 cut(s) 159, 175
BspLI GGNNCC 3 cut(s) 16, 109, 517
BspPI GGATC 2 cut(s) 262, 541
BspQI GCTCTTC 1 cut(s) 658
BspT104I TTCGAA 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 198
BsrI ACTGG 3 cut(s) 248, 271, 293
BssECI CCNNGG 3 cut(s) 103, 435, 603
BssMI GATC 3 cut(s) 72, 267, 546
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 105, 604
Bst4CI ACNGT 2 cut(s) 299, 571
Bst6I CTCTTC 2 cut(s) 52, 658
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 2 cut(s) 543, 588
BstDSI CCRYGG 1 cut(s) 435
BstFNI CGCG 2 cut(s) 159, 175
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 4 cut(s) 161, 177, 362, 410
BstKTI GATC 3 cut(s) 75, 270, 549
BstMBI GATC 3 cut(s) 72, 267, 546
BstMWI GCNNNNNNNGC 2 cut(s) 181, 631
BstNI CCWGG 2 cut(s) 105, 604
BstNSI RCATGY 2 cut(s) 529, 599
BstSCI CCNGG 2 cut(s) 103, 602
BstUI CGCG 2 cut(s) 159, 175
BstV1I GCAGC 2 cut(s) 349, 392
BstV2I GAAGAC 2 cut(s) 147, 324
BstX2I RGATCY 2 cut(s) 267, 546
BstYI RGATCY 2 cut(s) 267, 546
BsuRI GGCC 4 cut(s) 108, 434, 440, 608
BtgI CCRYGG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 502
CaiI CAGNNNCTG 1 cut(s) 453
CfoI GCGC 4 cut(s) 161, 177, 362, 410
Cfr13I GGNCC 4 cut(s) 107, 148, 516, 606
Csp6I GTAC 5 cut(s) 274, 283, 295, 567, 641
CviAII CATG 4 cut(s) 253, 436, 526, 596
CviQI GTAC 5 cut(s) 274, 283, 295, 567, 641
DdeI CTNAG 2 cut(s) 543, 588
DpnI GATC 3 cut(s) 74, 269, 548
DpnII GATC 3 cut(s) 72, 267, 546
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 52, 658
EarI CTCTTC 2 cut(s) 52, 658
EciI GGCGGA 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 2 cut(s) 148, 516
Eco53kI GAGCTC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 184
EcoO109I RGGNCCY 2 cut(s) 516, 606
EcoRII CCWGG 2 cut(s) 103, 602
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 4 cut(s) 256, 439, 529, 599
FaiI YATR 7 cut(s) 254, 437, 510, 522, 527, 597, 639
FaqI GGGAC 2 cut(s) 80, 529
FatI CATG 4 cut(s) 252, 435, 525, 595
Fnu4HI GCNGC 7 cut(s) 6, 193, 196, 363, 403, 406, 669
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 7 cut(s) 6, 193, 196, 363, 403, 406, 669
GlaI GCGC 4 cut(s) 160, 176, 361, 409
GluI GCNGC 7 cut(s) 6, 193, 196, 363, 403, 406, 669
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 4 cut(s) 108, 434, 440, 608
HhaI GCGC 4 cut(s) 161, 177, 362, 410
Hin1II CATG 4 cut(s) 256, 439, 529, 599
Hin6I GCGC 4 cut(s) 159, 175, 360, 408
HinP1I GCGC 4 cut(s) 159, 175, 360, 408
HinfI GANTC 1 cut(s) 476
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 2 cut(s) 475, 591
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 1 cut(s) 574
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 4 cut(s) 141, 365, 424, 610
HpyCH4III ACNGT 2 cut(s) 299, 571
HpyCH4V TGCA 3 cut(s) 504, 512, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 631
HpyF3I CTNAG 2 cut(s) 543, 588
Hsp92II CATG 4 cut(s) 256, 439, 529, 599
HspAI GCGC 4 cut(s) 159, 175, 360, 408
Kzo9I GATC 3 cut(s) 72, 267, 546
LguI GCTCTTC 1 cut(s) 658
LmnI GCTCC 4 cut(s) 189, 203, 214, 256
Lsp1109I GCAGC 2 cut(s) 349, 392
MaeIII GTNAC 1 cut(s) 598
MalI GATC 3 cut(s) 74, 269, 548
MbiI CCGCTC 1 cut(s) 198
MboI GATC 3 cut(s) 72, 267, 546
MboII GAAGA 6 cut(s) 39, 42, 152, 329, 675, 716
MflI RGATCY 2 cut(s) 267, 546
MhlI GDGCHC 2 cut(s) 186, 261
MluCI AATT 2 cut(s) 505, 628
MseI TTAA 2 cut(s) 443, 627
MspA1I CMGCKG 1 cut(s) 405
MspR9I CCNGG 2 cut(s) 105, 604
MvaI CCWGG 2 cut(s) 105, 604
MvnI CGCG 2 cut(s) 159, 175
MwoI GCNNNNNNNGC 2 cut(s) 181, 631
NcoI CCATGG 1 cut(s) 435
NdeII GATC 3 cut(s) 72, 267, 546
NlaIII CATG 4 cut(s) 256, 439, 529, 599
NlaIV GGNNCC 3 cut(s) 16, 109, 517
NspI RCATGY 2 cut(s) 529, 599
NspV TTCGAA 1 cut(s) 479
PciI ACATGT 2 cut(s) 525, 595
PciSI GCTCTTC 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PfeI GAWTC 1 cut(s) 476
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 7 cut(s) 7, 194, 197, 364, 404, 407, 670
PpuMI RGGWCCY 1 cut(s) 516
PscI ACATGT 2 cut(s) 525, 595
Psp124BI GAGCTC 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 103, 602
PspGI CCWGG 2 cut(s) 103, 602
PspN4I GGNNCC 3 cut(s) 16, 109, 517
PspPI GGNCC 4 cut(s) 107, 148, 516, 606
PspPPI RGGWCCY 1 cut(s) 516
PstNI CAGNNNCTG 1 cut(s) 453
PsuI RGATCY 2 cut(s) 267, 546
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 5 cut(s) 275, 284, 296, 568, 642
RsaNI GTAC 5 cut(s) 274, 283, 295, 567, 641
SacI GAGCTC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 658
SaqAI TTAA 2 cut(s) 443, 627
SatI GCNGC 7 cut(s) 6, 193, 196, 363, 403, 406, 669
Sau3AI GATC 3 cut(s) 72, 267, 546
Sau96I GGNCC 4 cut(s) 107, 148, 516, 606
ScaI AGTACT 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 105, 604
SduI GDGCHC 2 cut(s) 186, 261
SfuI TTCGAA 1 cut(s) 479
SinI GGWCC 2 cut(s) 148, 516
SmlI CTYRAG 2 cut(s) 209, 263
SmoI CTYRAG 2 cut(s) 209, 263
Sse9I AATT 2 cut(s) 505, 628
SsiI CCGC 7 cut(s) 190, 193, 196, 333, 403, 613, 669
SstI GAGCTC 1 cut(s) 186
StyD4I CCNGG 2 cut(s) 103, 602
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 2 cut(s) 299, 571
TaqI TCGA 1 cut(s) 479
TasI AATT 2 cut(s) 505, 628
TatI WGTACW 3 cut(s) 273, 282, 566
TauI GCSGC 4 cut(s) 195, 198, 405, 671
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 2 cut(s) 443, 627
Tru9I TTAA 2 cut(s) 443, 627
TscAI CASTG 1 cut(s) 382
TseI GCWGC 3 cut(s) 5, 362, 405
TspDTI ATGAA 1 cut(s) 241
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 1 cut(s) 382
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 148, 516
XceI RCATGY 2 cut(s) 529, 599
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.