Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041685.1

Orthogroup ID

OG0001489

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1008

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041685.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 523 bp

atggctacctctggttccaagaacaaccaccctcctccctcttcttccaagcctccgaagaaccaaatcgtcatcgccgacccccaaatcccaaaccccggcccctccacctccaacatcactccttcccgtgaagacgtggccctctcacgcgcctcccacctcacgcgccaagagctcctccgccgccgctcccaaaacctcaaggagctgacgaaatgctacaaagaccactactgggggttcatggagcatctcaagatccagtaccgggagtactactggaagtacggtgtcagccctttcaaagaagacaacaacgccaccgccaccgccaccaataacaacaaccatgggggcgctgctgttgaaggcagtgatgacaaccacaataacaatcgccgctgcgcttccgtcggctgtaagttgaaggccatggccttaaccagcttctgccacctccacattctttcggattcgaagcagaggctctacaaggcttgcaattatgttatcaagaggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3Hc3H

Protein Analysis

174

Amino Acids

19.66

Weight (kDa)

9.58

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05860 AT1G05860 AT1G05860 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT3G53860
fragaria_vesca	FvH4_2g08280 FvH4_2g08280 FvH4_2g08280 FvH4_4g11360
malus_domestica	MD04G1037400.v1.1 MD04G1037500.v1.1 MD04G1188100.v1.1
prunus_persica	Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1
pyrus_communis	pycom04g03050 pycom04g03060
rosa_chinensis	RchiOBHm_Chr4g0407911 RchiOBHm_Chr6g0263161 RchiOBHm_Chr6g0273581
rosa_laevigata	RLG00000008679 RLG00000008682 RLG00000014367
rosa_multiflora	Rmu_co8062746.1_g000001 Rmu_sc0002073.1_g000013 Rmu_sc0002481.1_g000059 Rmu_sc0041685.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430970 Rroxscaffold_5G00352520 Rroxscaffold_7G00204610
rosa_rugosa	Rorug04G0083000 Rorug04G0083100 Rorug06G0004000
rosa_samantha	Rh4AG147300 Rh4BG145000 Rh4CG154200 Rh4DG141400 Rh6AG123100 Rh6BG118100 Rh6CG116300 Rh6DG104800 Rh6DG186100
rosa_wichuraiana	Rw0G018640 Rw4G012090 Rw6G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	192
AccII	CGCG	2 cut(s)	153, 169
AciI	CCGC	6 cut(s)	184, 187, 190, 327, 333, 403
AclWI	GGATC	1 cut(s)	256
AfaI	GTAC	3 cut(s)	269, 278, 290
AfiI	CCNNNNNNNGG	3 cut(s)	98, 238, 271
AgsI	TTSAA	3 cut(s)	307, 371, 430
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	3 cut(s)	178, 211, 450
AluI	AGCT	3 cut(s)	178, 211, 450
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	453
AoxI	GGCC	4 cut(s)	100, 141, 432, 438
ApeKI	GCWGC	2 cut(s)	362, 405
AspLEI	GCGC	4 cut(s)	155, 171, 362, 410
AspS9I	GGNCC	2 cut(s)	101, 142
AsuC2I	CCSGG	2 cut(s)	99, 272
AsuII	TTCGAA	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	2 cut(s)	141, 318
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	349, 392
BcnI	CCSGG	2 cut(s)	99, 272
BfoI	RGCGCY	1 cut(s)	363
BisI	GCNGC	5 cut(s)	187, 190, 363, 403, 406
BlsI	GCNGC	5 cut(s)	188, 191, 364, 404, 407
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	99, 272
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	101, 142
BmiI	GGNNCC	2 cut(s)	16, 103
BmrFI	CCNGG	2 cut(s)	99, 272
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	247
BpiI	GAAGAC	2 cut(s)	141, 318
Bpu14I	TTCGAA	1 cut(s)	479
BpuEI	CTTGAG	2 cut(s)	188, 242
BpuMI	CCSGG	2 cut(s)	99, 272
BsaJI	CCNNGG	3 cut(s)	97, 352, 435
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 238, 271
Bse1I	ACTGG	3 cut(s)	242, 265, 287
BseDI	CCNNGG	3 cut(s)	97, 352, 435
BseLI	CCNNNNNNNGG	3 cut(s)	98, 238, 271
BseNI	ACTGG	3 cut(s)	242, 265, 287
BseRI	GAGGAG	2 cut(s)	24, 170
BseXI	GCAGC	2 cut(s)	349, 392
Bsh1236I	CGCG	2 cut(s)	153, 169
BshFI	GGCC	4 cut(s)	102, 143, 434, 440
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	99, 271
BslI	CCNNNNNNNGG	3 cut(s)	98, 238, 271
BsnI	GGCC	4 cut(s)	102, 143, 434, 440
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	261
Bsp19I	CCATGG	2 cut(s)	352, 435
BspACI	CCGC	6 cut(s)	184, 187, 190, 327, 333, 403
BspANI	GGCC	4 cut(s)	102, 143, 434, 440
BspFNI	CGCG	2 cut(s)	153, 169
BspLI	GGNNCC	2 cut(s)	16, 103
BspPI	GGATC	1 cut(s)	256
BspT104I	TTCGAA	1 cut(s)	479
BsrBI	CCGCTC	1 cut(s)	192
BsrI	ACTGG	3 cut(s)	242, 265, 287
BssECI	CCNNGG	3 cut(s)	97, 352, 435
BssMI	GATC	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	352, 435
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	502
BstDSI	CCRYGG	2 cut(s)	352, 435
BstFNI	CGCG	2 cut(s)	153, 169
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	4 cut(s)	155, 171, 362, 410
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	97, 270
BstUI	CGCG	2 cut(s)	153, 169
BstV1I	GCAGC	2 cut(s)	349, 392
BstV2I	GAAGAC	2 cut(s)	141, 318
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	4 cut(s)	102, 143, 434, 440
BtgI	CCRYGG	2 cut(s)	352, 435
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	502
CaiI	CAGNNNCTG	1 cut(s)	453
CfoI	GCGC	4 cut(s)	155, 171, 362, 410
Cfr13I	GGNCC	2 cut(s)	101, 142
Csp6I	GTAC	3 cut(s)	268, 277, 289
CviAII	CATG	3 cut(s)	247, 353, 436
CviQI	GTAC	3 cut(s)	268, 277, 289
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	352, 435
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	352, 435
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	2 cut(s)	352, 435
FaeI	CATG	3 cut(s)	250, 356, 439
FaiI	YATR	4 cut(s)	248, 354, 437, 510
FatI	CATG	3 cut(s)	246, 352, 435
Fnu4HI	GCNGC	5 cut(s)	187, 190, 363, 403, 406
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	5 cut(s)	187, 190, 363, 403, 406
GlaI	GCGC	4 cut(s)	154, 170, 361, 409
GluI	GCNGC	5 cut(s)	187, 190, 363, 403, 406
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	4 cut(s)	102, 143, 434, 440
HapII	CCGG	2 cut(s)	99, 271
HhaI	GCGC	4 cut(s)	155, 171, 362, 410
Hin1II	CATG	3 cut(s)	250, 356, 439
Hin6I	GCGC	4 cut(s)	153, 169, 360, 408
HinP1I	GCGC	4 cut(s)	153, 169, 360, 408
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	2 cut(s)	99, 271
Hpy188I	TCNGA	2 cut(s)	57, 475
Hpy188III	TCNNGA	2 cut(s)	259, 517
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	3 cut(s)	135, 365, 424
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	250, 356, 439
HspAI	GCGC	4 cut(s)	153, 169, 360, 408
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	4 cut(s)	183, 197, 208, 250
LpnPI	CCDG	6 cut(s)	112, 223, 268, 278, 284, 460
Lsp1109I	GCAGC	2 cut(s)	349, 392
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	1 cut(s)	138
MalI	GATC	1 cut(s)	263
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	1 cut(s)	261
MboII	GAAGA	5 cut(s)	33, 36, 70, 146, 323
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	138
MseI	TTAA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	405
MspI	CCGG	2 cut(s)	99, 271
MspR9I	CCNGG	2 cut(s)	99, 272
MvnI	CGCG	2 cut(s)	153, 169
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	2 cut(s)	99, 272
NcoI	CCATGG	2 cut(s)	352, 435
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	3 cut(s)	250, 356, 439
NlaIV	GGNNCC	2 cut(s)	16, 103
NspV	TTCGAA	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	5 cut(s)	188, 191, 364, 404, 407
Psp124BI	GAGCTC	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	16, 103
PspPI	GGNCC	2 cut(s)	101, 142
PstNI	CAGNNNCTG	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	261
RsaI	GTAC	3 cut(s)	269, 278, 290
RsaNI	GTAC	3 cut(s)	268, 277, 289
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	5 cut(s)	187, 190, 363, 403, 406
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	2 cut(s)	101, 142
ScaI	AGTACT	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	99, 272
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	9 cut(s)	11, 113, 141, 165, 180, 204, 213, 452, 462
SfaNI	GCATC	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	479
SmlI	CTYRAG	2 cut(s)	203, 257
SmoI	CTYRAG	2 cut(s)	203, 257
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	6 cut(s)	184, 187, 190, 327, 333, 403
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	97, 270
StyI	CCWWGG	2 cut(s)	352, 435
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	479
TasI	AATT	1 cut(s)	505
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	3 cut(s)	189, 192, 405
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	2 cut(s)	362, 405
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	403
TspRI	CASTG	1 cut(s)	382
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.