pycom04g03050

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0001489
Physical Location & Seq
Reverse (-)
2821417 .. 2825020
3604 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g03050.1

Sequence Viewer

Length: 840 bp
ATGGCTGCCTCTGGTTCCAAGATCCATCCTCCTCCCTCTTCTTCCAAACCTCCCAAGAACCCAACGAGCCTCAACCCCATCACTGAAACCCAAACCCCAAACTCCGACCCTTCCACCTCCACAATCCCTCCTGTCCCACCGTCCCAAGAAGAAATCGCCCTCTCACGCGCTTCCCACATCACCCACCACGAGCTCATCCGCCGCCGCCGCTCCTACCTCAGAGAGCTCAAAAAATGCTACAAATCCCACTACTGGGCACTCATGGAGGAGCTTCGGATTGGGTACAGGGAGTACTGGTGGAACTACGGTGTCAGCCCCTACAAGGAAGAGCACAGGAACGAGAGAGACGCTGCTGGGGTTGCTGAAGGCACTGATGAGAACAACAACAACATCAACGGCAATTGCAACAACAATAATCGTGGTGCTGCCGCCGGCTTCGATGCCCAAAGGAAACTGCAATGTGCTTCTCAGCAGTGTAAAGGCAAGGCCATGGCGATGACGAGCTTTTGCCACCTTCATATTCTTTCGGATCCGAAGCAGAAGCTCTATAAGCCTTGTGATTATGTTATCAAGAGTGCTCAGGCAGGACCTATAACATGTGGGAAGCCGATACTGAGATCCACTGTTCCTTCTCTTTGCCCAATTCACTTCCAAGTGGCTCAGAAGGCTGTCAGAAGGGCCTTGAAGAAGGCAGGCCTGAATATGTCCTCATCAAGTAAGCTGGCTCCAAAGTTCCATGTCATAATAGCGGAATACGTACACCAAATTCAGGCCAAACGAAGAACTGCACAAAGAGCCAAGGGGAAAAAGGTCGCAATTAAGGAAGAAAATGCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

280

Amino Acids

31.17

Weight (kDa)

9.73

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 154 - 217 2.1e-17 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 210
AccII CGCG 1 cut(s) 168
AciI CCGC 6 cut(s) 199, 202, 205, 208, 429, 749
AclWI GGATC 4 cut(s) 16, 524, 537, 612
AcsI RAATTY 1 cut(s) 765
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 3 cut(s) 284, 293, 759
AfiI CCNNNNNNNGG 4 cut(s) 252, 253, 322, 769
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 1 cut(s) 685
AluBI AGCT 6 cut(s) 193, 226, 271, 504, 544, 721
AluI AGCT 6 cut(s) 193, 226, 271, 504, 544, 721
Alw21I GWGCWC 4 cut(s) 195, 228, 333, 580
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 4 cut(s) 16, 524, 537, 612
AoxI GGCC 4 cut(s) 486, 678, 694, 771
ApeKI GCWGC 3 cut(s) 5, 350, 425
ApoI RAATTY 1 cut(s) 765
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 587, 678
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 259
BamHI GGATCC 1 cut(s) 529
BanII GRGCYC 2 cut(s) 195, 228
BauI CACGAG 1 cut(s) 188
Bbv12I GWGCWC 4 cut(s) 195, 228, 333, 580
BbvI GCAGC 2 cut(s) 337, 412
BccI CCATC 2 cut(s) 33, 86
BceAI ACGGC 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 339
BisI GCNGC 7 cut(s) 6, 202, 205, 208, 351, 426, 429
BlsI GCNGC 7 cut(s) 7, 203, 206, 209, 352, 427, 430
BmcAI AGTACT 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 2 cut(s) 587, 678
BmiI GGNNCC 3 cut(s) 16, 531, 726
BmrI ACTGGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 430
BmuI ACTGGG 1 cut(s) 262
Bpu10I CCTNAGC 1 cut(s) 579
BsaAI YACGTR 1 cut(s) 757
BsaJI CCNNGG 2 cut(s) 489, 798
BsaXI ACNNNNNCTCC 4 cut(s) 112, 142, 281, 311
Bsc4I CCNNNNNNNGG 4 cut(s) 252, 253, 322, 769
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 2 cut(s) 257, 299
Bse3DI GCAATG 1 cut(s) 464
BseDI CCNNGG 2 cut(s) 489, 798
BseGI GGATG 2 cut(s) 25, 195
BseLI CCNNNNNNNGG 4 cut(s) 252, 253, 322, 769
BseMI GCAATG 1 cut(s) 464
BseMII CTCAG 5 cut(s) 232, 482, 593, 605, 674
BseNI ACTGG 2 cut(s) 257, 299
BseRI GAGGAG 2 cut(s) 21, 281
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 2 cut(s) 337, 412
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 4 cut(s) 488, 680, 696, 773
BsiHKAI GWGCWC 4 cut(s) 195, 228, 333, 580
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 2 cut(s) 119, 127
BslI CCNNNNNNNGG 4 cut(s) 252, 253, 322, 769
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 2 cut(s) 119, 127
BsnI GGCC 4 cut(s) 488, 680, 696, 773
Bsp1286I GDGCHC 5 cut(s) 195, 228, 259, 333, 580
Bsp143I GATC 3 cut(s) 21, 529, 617
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 6 cut(s) 199, 202, 205, 208, 429, 749
BspANI GGCC 4 cut(s) 488, 680, 696, 773
BspCNI CTCAG 5 cut(s) 231, 481, 592, 606, 673
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 3 cut(s) 16, 531, 726
BspPI GGATC 4 cut(s) 16, 524, 537, 612
BspQI GCTCTTC 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 2 cut(s) 257, 299
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 2 cut(s) 489, 798
BssMI GATC 3 cut(s) 21, 529, 617
BssSI CACGAG 1 cut(s) 188
BssT1I CCWWGG 2 cut(s) 489, 798
Bst2BI CACGAG 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 141, 308, 625
Bst6I CTCTTC 2 cut(s) 43, 321
BstBAI YACGTR 1 cut(s) 757
BstC8I GCNNGC 3 cut(s) 433, 694, 723
BstDEI CTNAG 5 cut(s) 218, 468, 579, 614, 660
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 2 cut(s) 25, 195
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 3 cut(s) 24, 532, 620
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 3 cut(s) 21, 529, 617
BstMWI GCNNNNNNNGC 5 cut(s) 207, 359, 550, 665, 794
BstNSI RCATGY 1 cut(s) 600
BstSLI GKGCMC 1 cut(s) 259
BstSNI TACGTA 1 cut(s) 757
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 337, 412
BstX2I RGATCY 3 cut(s) 21, 529, 617
BstYI RGATCY 3 cut(s) 21, 529, 617
BsuRI GGCC 4 cut(s) 488, 680, 696, 773
BtgI CCRYGG 1 cut(s) 489
BtgZI GCGATG 1 cut(s) 509
BtsCI GGATG 2 cut(s) 25, 195
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 4 cut(s) 81, 369, 479, 621
Cac8I GCNNGC 3 cut(s) 433, 694, 723
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 2 cut(s) 587, 678
CseI GACGC 1 cut(s) 356
Csp6I GTAC 3 cut(s) 283, 292, 758
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 4 cut(s) 262, 490, 597, 737
CviQI GTAC 3 cut(s) 283, 292, 758
DdeI CTNAG 5 cut(s) 218, 468, 579, 614, 660
DpnI GATC 3 cut(s) 23, 531, 619
DpnII GATC 3 cut(s) 21, 529, 617
Eam1104I CTCTTC 2 cut(s) 43, 321
EarI CTCTTC 2 cut(s) 43, 321
EciI GGCGGA 1 cut(s) 188
Ecl136II GAGCTC 2 cut(s) 193, 226
Eco105I TACGTA 1 cut(s) 757
Eco130I CCWWGG 2 cut(s) 489, 798
Eco147I AGGCCT 1 cut(s) 696
Eco24I GRGCYC 2 cut(s) 195, 228
Eco47I GGWCC 1 cut(s) 587
Eco53kI GAGCTC 2 cut(s) 193, 226
Eco57I CTGAAG 1 cut(s) 384
EcoICRI GAGCTC 2 cut(s) 193, 226
EcoO109I RGGNCCY 2 cut(s) 587, 678
EcoT14I CCWWGG 2 cut(s) 489, 798
EcoT38I GRGCYC 2 cut(s) 195, 228
ErhI CCWWGG 2 cut(s) 489, 798
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 4 cut(s) 265, 493, 600, 740
FaqI GGGAC 2 cut(s) 119, 127
FatI CATG 4 cut(s) 261, 489, 596, 736
Fnu4HI GCNGC 7 cut(s) 6, 202, 205, 208, 351, 426, 429
FokI GGATG 2 cut(s) 12, 182
FriOI GRGCYC 2 cut(s) 195, 228
Fsp4HI GCNGC 7 cut(s) 6, 202, 205, 208, 351, 426, 429
GlaI GCGC 1 cut(s) 169
GluI GCNGC 7 cut(s) 6, 202, 205, 208, 351, 426, 429
GsaI CCCAGC 1 cut(s) 357
HaeIII GGCC 4 cut(s) 488, 680, 696, 773
HapII CCGG 1 cut(s) 432
HgaI GACGC 1 cut(s) 356
HhaI GCGC 1 cut(s) 170
Hin1II CATG 4 cut(s) 265, 493, 600, 740
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HpaII CCGG 1 cut(s) 432
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 760
Hpy188I TCNGA 7 cut(s) 106, 221, 276, 529, 534, 663, 674
Hpy188III TCNNGA 1 cut(s) 571
Hpy8I GTNNAC 1 cut(s) 760
HpyAV CCTTC 7 cut(s) 120, 359, 524, 639, 658, 669, 682
HpyCH4III ACNGT 3 cut(s) 141, 308, 625
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 3 cut(s) 405, 457, 788
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 359, 550, 665, 794
HpyF3I CTNAG 5 cut(s) 218, 468, 579, 614, 660
HpySE526I ACGT 1 cut(s) 756
Hsp92II CATG 4 cut(s) 265, 493, 600, 740
HspAI GCGC 1 cut(s) 168
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
Kzo9I GATC 3 cut(s) 21, 529, 617
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 3 cut(s) 215, 268, 730
Lsp1109I GCAGC 2 cut(s) 337, 412
LweI GCATC 1 cut(s) 430
MaeII ACGT 1 cut(s) 756
MalI GATC 3 cut(s) 23, 531, 619
MbiI CCGCTC 1 cut(s) 210
MboI GATC 3 cut(s) 21, 529, 617
MboII GAAGA 7 cut(s) 30, 33, 161, 338, 697, 792, 836
MfeI CAATTG 1 cut(s) 400
MflI RGATCY 3 cut(s) 21, 529, 617
MhlI GDGCHC 5 cut(s) 195, 228, 259, 333, 580
MluCI AATT 4 cut(s) 400, 642, 765, 816
MmeI TCCRAC 1 cut(s) 129
MroNI GCCGGC 1 cut(s) 431
MseI TTAA 1 cut(s) 819
MslI CAYNNNNRTG 1 cut(s) 494
MspI CCGG 1 cut(s) 432
MunI CAATTG 1 cut(s) 400
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 5 cut(s) 207, 359, 550, 665, 794
NaeI GCCGGC 1 cut(s) 433
NcoI CCATGG 1 cut(s) 489
NdeII GATC 3 cut(s) 21, 529, 617
NgoMIV GCCGGC 1 cut(s) 431
NlaIII CATG 4 cut(s) 265, 493, 600, 740
NlaIV GGNNCC 3 cut(s) 16, 531, 726
NspI RCATGY 1 cut(s) 600
PceI AGGCCT 1 cut(s) 696
PciI ACATGT 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 321
PdiI GCCGGC 1 cut(s) 433
PkrI GCNGC 7 cut(s) 7, 203, 206, 209, 352, 427, 430
Ppu21I YACGTR 1 cut(s) 757
PpuMI RGGWCCY 1 cut(s) 587
PscI ACATGT 1 cut(s) 596
Psp124BI GAGCTC 2 cut(s) 195, 228
Psp5II RGGWCCY 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 353
PspN4I GGNNCC 3 cut(s) 16, 531, 726
PspPI GGNCC 2 cut(s) 587, 678
PspPPI RGGWCCY 1 cut(s) 587
PsuI RGATCY 3 cut(s) 21, 529, 617
RsaI GTAC 3 cut(s) 284, 293, 759
RsaNI GTAC 3 cut(s) 283, 292, 758
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 2 cut(s) 195, 228
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 1 cut(s) 819
SatI GCNGC 7 cut(s) 6, 202, 205, 208, 351, 426, 429
Sau3AI GATC 3 cut(s) 21, 529, 617
Sau96I GGNCC 2 cut(s) 587, 678
ScaI AGTACT 1 cut(s) 293
SduI GDGCHC 5 cut(s) 195, 228, 259, 333, 580
SfaNI GCATC 1 cut(s) 430
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 494
SnaBI TACGTA 1 cut(s) 757
Sse9I AATT 4 cut(s) 400, 642, 765, 816
SseBI AGGCCT 1 cut(s) 696
SsiI CCGC 6 cut(s) 199, 202, 205, 208, 429, 749
SstI GAGCTC 2 cut(s) 195, 228
StuI AGGCCT 1 cut(s) 696
StyI CCWWGG 2 cut(s) 489, 798
TaaI ACNGT 3 cut(s) 141, 308, 625
TaiI ACGT 1 cut(s) 759
TaqI TCGA 1 cut(s) 438
TasI AATT 4 cut(s) 400, 642, 765, 816
TatI WGTACW 1 cut(s) 291
TauI GCSGC 4 cut(s) 204, 207, 210, 431
Tru1I TTAA 1 cut(s) 819
Tru9I TTAA 1 cut(s) 819
TscAI CASTG 4 cut(s) 88, 376, 479, 628
TseI GCWGC 3 cut(s) 5, 350, 425
TspDTI ATGAA 1 cut(s) 506
TspRI CASTG 4 cut(s) 88, 376, 479, 628
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 1 cut(s) 765
XceI RCATGY 1 cut(s) 600
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.