Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002073.1

Orthogroup ID

OG0001489

Physical Location & Seq

Genomic Coordinates Reverse (-)

75171 .. 77830

Gene Structure 2660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002073.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggctacctctggttccaagaacaaccaccctcctccctcttcttccaagcctccaaagaaccaaatcgtcatcgccgacccccaaatcccaaaccccggcccctccacctccgccatcactccttcccgtgaagacgtggccctctcacgcgcctcccacctcacgcgccaagagctcctccgccgccgctcccaaaacctcaaggagctgacgaaatgctacaaagaccactactgggggttcatggagcatctcaagatccagtaccgggagtactactggaagtacggtgtcagccctttcaaagaagacaacaacgccaccgccaccgccaccaataacaacaaccatgggggcgctgctgttgaaggcagtgatgacaaccacaataacaatcgccgctgcgcttccgtcggctgtaagttgaaggccatggccttaaccagcttctgccacctccacattctttcggattcgaagcagaggctctacaaggcttgcaattatgttatcaagagtgctcaggcaggacctataacatgtggcaagccaatactgagatccactaccccttctctttgtactgtccacttccaaaaggctcagaaacatgtaaccagggccttgcggaaggcagggcttaatgtctcctcatcaagtaagcttgctcccaagttccatgtgatagtggcagaatatgtacgccaaatccaatccacacgaagagccgcacgaaaggaaaataaaagtaaagttgcaataaaggaagaaactgctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3Hc3H

Protein Analysis

261

Amino Acids

29.07

Weight (kDa)

9.9

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05860 AT1G05860 AT1G05860 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT3G53860
fragaria_vesca	FvH4_2g08280 FvH4_2g08280 FvH4_2g08280 FvH4_4g11360
malus_domestica	MD04G1037400.v1.1 MD04G1037500.v1.1 MD04G1188100.v1.1
prunus_persica	Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1
pyrus_communis	pycom04g03050 pycom04g03060
rosa_chinensis	RchiOBHm_Chr4g0407911 RchiOBHm_Chr6g0263161 RchiOBHm_Chr6g0273581
rosa_laevigata	RLG00000008679 RLG00000008682 RLG00000014367
rosa_multiflora	Rmu_co8062746.1_g000001 Rmu_sc0002073.1_g000013 Rmu_sc0002481.1_g000059 Rmu_sc0041685.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430970 Rroxscaffold_5G00352520 Rroxscaffold_7G00204610
rosa_rugosa	Rorug04G0083000 Rorug04G0083100 Rorug06G0004000
rosa_samantha	Rh4AG147300 Rh4BG145000 Rh4CG154200 Rh4DG141400 Rh6AG123100 Rh6BG118100 Rh6CG116300 Rh6DG104800 Rh6DG186100
rosa_wichuraiana	Rw0G018640 Rw4G012090 Rw6G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	192
AccII	CGCG	2 cut(s)	153, 169
AciI	CCGC	9 cut(s)	114, 184, 187, 190, 327, 333, 403, 631, 732
AclWI	GGATC	2 cut(s)	256, 558
AfaI	GTAC	5 cut(s)	269, 278, 290, 586, 705
AfiI	CCNNNNNNNGG	3 cut(s)	98, 238, 271
AflIII	ACRYGT	2 cut(s)	542, 613
AgsI	TTSAA	3 cut(s)	307, 371, 430
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	620
AluBI	AGCT	4 cut(s)	178, 211, 450, 667
AluI	AGCT	4 cut(s)	178, 211, 450, 667
Alw21I	GWGCWC	2 cut(s)	180, 526
Alw26I	GTCTC	1 cut(s)	655
AlwI	GGATC	2 cut(s)	256, 558
AlwNI	CAGNNNCTG	1 cut(s)	453
AoxI	GGCC	5 cut(s)	100, 141, 432, 438, 624
ApeKI	GCWGC	2 cut(s)	362, 405
AspLEI	GCGC	4 cut(s)	155, 171, 362, 410
AspS9I	GGNCC	4 cut(s)	101, 142, 533, 624
AsuC2I	CCSGG	2 cut(s)	99, 272
AsuII	TTCGAA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	2 cut(s)	141, 318
Bbv12I	GWGCWC	2 cut(s)	180, 526
BbvI	GCAGC	2 cut(s)	349, 392
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	622
BcnI	CCSGG	2 cut(s)	99, 272
BcoDI	GTCTC	1 cut(s)	655
BfoI	RGCGCY	1 cut(s)	363
BisI	GCNGC	6 cut(s)	187, 190, 363, 403, 406, 732
BlsI	GCNGC	6 cut(s)	188, 191, 364, 404, 407, 733
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	3 cut(s)	99, 272, 622
Bme18I	GGWCC	1 cut(s)	533
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	4 cut(s)	101, 142, 533, 624
BmiI	GGNNCC	2 cut(s)	16, 103
BmrFI	CCNGG	3 cut(s)	99, 272, 622
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	247
BpiI	GAAGAC	2 cut(s)	141, 318
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	479
BpuEI	CTTGAG	2 cut(s)	188, 242
BpuMI	CCSGG	2 cut(s)	99, 272
BsaJI	CCNNGG	4 cut(s)	97, 352, 435, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 238, 271
Bse1I	ACTGG	3 cut(s)	242, 265, 287
BseBI	CCWGG	1 cut(s)	622
BseDI	CCNNGG	4 cut(s)	97, 352, 435, 621
BseLI	CCNNNNNNNGG	3 cut(s)	98, 238, 271
BseMII	CTCAG	3 cut(s)	539, 551, 620
BseNI	ACTGG	3 cut(s)	242, 265, 287
BseRI	GAGGAG	3 cut(s)	24, 170, 643
BseXI	GCAGC	2 cut(s)	349, 392
Bsh1236I	CGCG	2 cut(s)	153, 169
BshFI	GGCC	5 cut(s)	102, 143, 434, 440, 626
BsiHKAI	GWGCWC	2 cut(s)	180, 526
BsiSI	CCGG	2 cut(s)	99, 271
BslI	CCNNNNNNNGG	3 cut(s)	98, 238, 271
BsmAI	GTCTC	1 cut(s)	655
BsnI	GGCC	5 cut(s)	102, 143, 434, 440, 626
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	180, 526
Bsp143I	GATC	2 cut(s)	261, 563
Bsp19I	CCATGG	2 cut(s)	352, 435
BspACI	CCGC	9 cut(s)	114, 184, 187, 190, 327, 333, 403, 631, 732
BspANI	GGCC	5 cut(s)	102, 143, 434, 440, 626
BspCNI	CTCAG	3 cut(s)	538, 552, 619
BspFNI	CGCG	2 cut(s)	153, 169
BspLI	GGNNCC	2 cut(s)	16, 103
BspPI	GGATC	2 cut(s)	256, 558
BspQI	GCTCTTC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	479
BsrBI	CCGCTC	1 cut(s)	192
BsrI	ACTGG	3 cut(s)	242, 265, 287
BssECI	CCNNGG	4 cut(s)	97, 352, 435, 621
BssMI	GATC	2 cut(s)	261, 563
BssT1I	CCWWGG	2 cut(s)	352, 435
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	2 cut(s)	293, 589
Bst6I	CTCTTC	2 cut(s)	46, 721
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	502, 551, 669
BstDEI	CTNAG	3 cut(s)	525, 560, 606
BstDSI	CCRYGG	2 cut(s)	352, 435
BstFNI	CGCG	2 cut(s)	153, 169
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	4 cut(s)	155, 171, 362, 410
BstKTI	GATC	2 cut(s)	264, 566
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	2 cut(s)	261, 563
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	622
BstNSI	RCATGY	2 cut(s)	546, 617
BstSCI	CCNGG	3 cut(s)	97, 270, 620
BstUI	CGCG	2 cut(s)	153, 169
BstV1I	GCAGC	2 cut(s)	349, 392
BstV2I	GAAGAC	2 cut(s)	141, 318
BstX2I	RGATCY	2 cut(s)	261, 563
BstYI	RGATCY	2 cut(s)	261, 563
BsuRI	GGCC	5 cut(s)	102, 143, 434, 440, 626
BtgI	CCRYGG	2 cut(s)	352, 435
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	3 cut(s)	502, 551, 669
CaiI	CAGNNNCTG	1 cut(s)	453
CfoI	GCGC	4 cut(s)	155, 171, 362, 410
Cfr13I	GGNCC	4 cut(s)	101, 142, 533, 624
Csp6I	GTAC	5 cut(s)	268, 277, 289, 585, 704
CviAII	CATG	6 cut(s)	247, 353, 436, 543, 614, 683
CviQI	GTAC	5 cut(s)	268, 277, 289, 585, 704
DdeI	CTNAG	3 cut(s)	525, 560, 606
DpnI	GATC	2 cut(s)	263, 565
DpnII	GATC	2 cut(s)	261, 563
Eam1104I	CTCTTC	2 cut(s)	46, 721
EarI	CTCTTC	2 cut(s)	46, 721
EciI	GGCGGA	2 cut(s)	103, 173
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	352, 435
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	533
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoO109I	RGGNCCY	2 cut(s)	533, 624
EcoRII	CCWGG	1 cut(s)	620
EcoT14I	CCWWGG	2 cut(s)	352, 435
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	2 cut(s)	352, 435
FaeI	CATG	6 cut(s)	250, 356, 439, 546, 617, 686
FaiI	YATR	9 cut(s)	248, 354, 437, 510, 539, 544, 615, 684, 702
FatI	CATG	6 cut(s)	246, 352, 435, 542, 613, 682
Fnu4HI	GCNGC	6 cut(s)	187, 190, 363, 403, 406, 732
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	6 cut(s)	187, 190, 363, 403, 406, 732
GlaI	GCGC	4 cut(s)	154, 170, 361, 409
GluI	GCNGC	6 cut(s)	187, 190, 363, 403, 406, 732
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	5 cut(s)	102, 143, 434, 440, 626
HapII	CCGG	2 cut(s)	99, 271
HhaI	GCGC	4 cut(s)	155, 171, 362, 410
Hin1II	CATG	6 cut(s)	250, 356, 439, 546, 617, 686
Hin6I	GCGC	4 cut(s)	153, 169, 360, 408
HinP1I	GCGC	4 cut(s)	153, 169, 360, 408
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	2 cut(s)	99, 271
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	2 cut(s)	475, 609
Hpy188III	TCNNGA	2 cut(s)	259, 517
Hpy8I	GTNNAC	1 cut(s)	592
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	5 cut(s)	135, 365, 424, 585, 628
HpyCH4III	ACNGT	2 cut(s)	293, 589
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	504, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	3 cut(s)	525, 560, 606
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	6 cut(s)	250, 356, 439, 546, 617, 686
HspAI	GCGC	4 cut(s)	153, 169, 360, 408
Kzo9I	GATC	2 cut(s)	261, 563
LguI	GCTCTTC	1 cut(s)	721
LmnI	GCTCC	5 cut(s)	183, 197, 208, 250, 676
Lsp1109I	GCAGC	2 cut(s)	349, 392
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	2 cut(s)	263, 565
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	2 cut(s)	261, 563
MboII	GAAGA	6 cut(s)	33, 36, 146, 323, 738, 782
MflI	RGATCY	2 cut(s)	261, 563
MhlI	GDGCHC	2 cut(s)	180, 526
MluCI	AATT	1 cut(s)	505
MseI	TTAA	2 cut(s)	443, 645
MspA1I	CMGCKG	1 cut(s)	405
MspI	CCGG	2 cut(s)	99, 271
MspR9I	CCNGG	3 cut(s)	99, 272, 622
MvaI	CCWGG	1 cut(s)	622
MvnI	CGCG	2 cut(s)	153, 169
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	2 cut(s)	99, 272
NcoI	CCATGG	2 cut(s)	352, 435
NdeII	GATC	2 cut(s)	261, 563
NlaIII	CATG	6 cut(s)	250, 356, 439, 546, 617, 686
NlaIV	GGNNCC	2 cut(s)	16, 103
NspI	RCATGY	2 cut(s)	546, 617
NspV	TTCGAA	1 cut(s)	479
PciI	ACATGT	2 cut(s)	542, 613
PciSI	GCTCTTC	1 cut(s)	721
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	6 cut(s)	188, 191, 364, 404, 407, 733
PpuMI	RGGWCCY	1 cut(s)	533
PscI	ACATGT	2 cut(s)	542, 613
Psp124BI	GAGCTC	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	620
PspN4I	GGNNCC	2 cut(s)	16, 103
PspPI	GGNCC	4 cut(s)	101, 142, 533, 624
PspPPI	RGGWCCY	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	453
PsuI	RGATCY	2 cut(s)	261, 563
RsaI	GTAC	5 cut(s)	269, 278, 290, 586, 705
RsaNI	GTAC	5 cut(s)	268, 277, 289, 585, 704
SacI	GAGCTC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	721
SaqAI	TTAA	2 cut(s)	443, 645
SatI	GCNGC	6 cut(s)	187, 190, 363, 403, 406, 732
Sau3AI	GATC	2 cut(s)	261, 563
Sau96I	GGNCC	4 cut(s)	101, 142, 533, 624
ScaI	AGTACT	1 cut(s)	278
ScrFI	CCNGG	3 cut(s)	99, 272, 622
SduI	GDGCHC	2 cut(s)	180, 526
SfaNI	GCATC	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	203, 257
SmoI	CTYRAG	2 cut(s)	203, 257
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	9 cut(s)	114, 184, 187, 190, 327, 333, 403, 631, 732
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	3 cut(s)	97, 270, 620
StyI	CCWWGG	2 cut(s)	352, 435
TaaI	ACNGT	2 cut(s)	293, 589
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	479
TasI	AATT	1 cut(s)	505
TatI	WGTACW	2 cut(s)	276, 584
TauI	GCSGC	4 cut(s)	189, 192, 405, 734
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	443, 645
Tru9I	TTAA	2 cut(s)	443, 645
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	2 cut(s)	362, 405
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	403
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	533
XceI	RCATGY	2 cut(s)	546, 617
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.