Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001489

Physical Location & Seq

Genomic Coordinates Reverse (-)

13447936 .. 13450145

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGTCAGCTTCCAAGAACATTCAGCAAAACCCTTTCTCCTCGAAACCACCACGGCCTCCGTATTCCTCCGGCGCTGCATCAACAACCGCAGTGGCTTCCACCTCAGCCGAGCCCCTAATTCGAAACTCTACCTTAAATCCTAACCCTAGCACCAGCGGCTTACCGTCGACATCGAATTCACCGATTACGATGTCACAAGAAGATGAAATCCTCGCACGCTCCAGTCACATAACCCGGTCGGAGCTTCTCAAACGCCGATCACACAACCTGAAGCAGCTGGCCAAGTGTTATAGAGACAATTATTGGGCTTTAATGGAGGATGTCAAGGCACAACACAGGGATTATTGGTGGAAGTATGGGATTAGTCAGTTTAAAGACGAAAATAATCAATCGAATAAGAGACGGAGGCTTGGTCAAGAGGGAGATATCGGAGATGGTGGTGATGCTGTTGAAGGTAGTGGAGACAATGTTACTAACAATGATGGTGTTAAGAGTGATCAGTATGCGAATAGTAATTGTGGGAGTTGTATGTATGGATGCAAAGCTAAAGCTATGGCGCTTACGAAATACTGTCAATTGCATATTCTCAAGGATAGTAAGCAGAAGCTCTACACTGGTTGCACAAACGTCATTAAACGAGCCCCAGCAGGACCATTACTTTGTGGAAAACCAACACTTGCGTCGACTGTTCCTGCACTGTGTAATATACACTTCCAGAAAGCCCAAAAGCATGTGGCTAAAGCTTTAAAGGATGCTGGTCATAATGTCTCTTCAACAAGCAAGCCTCCCCCAAAGCTCCATGTTATAGTAGCTGCGTTTGTGCATCATATTCAAGCGAAACGAAAAAATCCACAGAAGGAGTGTAAACTTAAAAGTGTAGTAAAAGAAGAAAATACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3Hc3H

Protein Analysis

301

Amino Acids

32.95

Weight (kDa)

9.58

Isoelectric Point (pI)

57.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC3H_KANSL2	PF13891	178 - 239	1e-14	KANL2-like, probable zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05860 AT1G05860 AT1G05860 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT3G53860
fragaria_vesca	FvH4_2g08280 FvH4_2g08280 FvH4_2g08280 FvH4_4g11360
malus_domestica	MD04G1037400.v1.1 MD04G1037500.v1.1 MD04G1188100.v1.1
prunus_persica	Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1
pyrus_communis	pycom04g03050 pycom04g03060
rosa_chinensis	RchiOBHm_Chr4g0407911 RchiOBHm_Chr6g0263161 RchiOBHm_Chr6g0273581
rosa_laevigata	RLG00000008679 RLG00000008682 RLG00000014367
rosa_multiflora	Rmu_co8062746.1_g000001 Rmu_sc0002073.1_g000013 Rmu_sc0002481.1_g000059 Rmu_sc0041685.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430970 Rroxscaffold_5G00352520 Rroxscaffold_7G00204610
rosa_rugosa	Rorug04G0083000 Rorug04G0083100 Rorug06G0004000
rosa_samantha	Rh4AG147300 Rh4BG145000 Rh4CG154200 Rh4DG141400 Rh6AG123100 Rh6BG118100 Rh6CG116300 Rh6DG104800 Rh6DG186100
rosa_wichuraiana	Rw0G018640 Rw4G012090 Rw6G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	170, 686
AciI	CCGC	2 cut(s)	90, 159
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	455, 777, 836
Alw26I	GTCTC	4 cut(s)	291, 397, 459, 775
AoxI	GGCC	2 cut(s)	56, 282
ApeKI	GCWGC	3 cut(s)	77, 277, 815
ApoI	RAATTY	1 cut(s)	178
ArsI	GACNNNNNNTTYG	2 cut(s)	645, 677
AspLEI	GCGC	2 cut(s)	77, 562
AspS9I	GGNCC	1 cut(s)	653
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	174, 455
AsuII	TTCGAA	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	653
BalI	TGGCCA	1 cut(s)	284
BanII	GRGCYC	2 cut(s)	117, 646
BbvCI	CCTCAGC	1 cut(s)	106
BbvI	GCAGC	3 cut(s)	64, 289, 802
BccI	CCATC	2 cut(s)	431, 479
BceAI	ACGGC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	4 cut(s)	291, 397, 459, 775
BfaI	CTAG	1 cut(s)	150
BfoI	RGCGCY	2 cut(s)	78, 563
BisI	GCNGC	4 cut(s)	78, 160, 278, 816
BlsI	GCNGC	4 cut(s)	79, 161, 279, 817
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	653
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	5 cut(s)	89, 436, 530, 745, 835
BpmI	CTGGAG	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	106
Bpu14I	TTCGAA	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	6 cut(s)	23, 53, 400, 430, 456, 486
Bse1I	ACTGG	2 cut(s)	225, 622
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	3 cut(s)	328, 545, 760
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	225, 622
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	64, 289, 802
BseYI	CCCAGC	1 cut(s)	646
BsgI	GTGCAG	1 cut(s)	681
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	58, 284
BsiEI	CGRYCG	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	72, 238
BsmAI	GTCTC	4 cut(s)	291, 397, 459, 775
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	58, 284
Bsp119I	TTCGAA	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	117, 646
Bsp143I	GATC	2 cut(s)	260, 499
BspACI	CCGC	2 cut(s)	90, 159
BspANI	GGCC	2 cut(s)	58, 284
BspCNI	CTCAG	1 cut(s)	119
BspT104I	TTCGAA	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	225, 622
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	2 cut(s)	260, 499
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	4 cut(s)	168, 575, 691, 702
Bst6I	CTCTTC	1 cut(s)	778
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	220, 282, 785
BstDEI	CTNAG	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	3 cut(s)	328, 545, 760
BstH2I	RGCGCY	2 cut(s)	78, 563
BstHHI	GCGC	2 cut(s)	77, 562
BstKTI	GATC	2 cut(s)	263, 502
BstMAI	GTCTC	4 cut(s)	291, 397, 459, 775
BstMBI	GATC	2 cut(s)	260, 499
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	1 cut(s)	236
BstV1I	GCAGC	3 cut(s)	64, 289, 802
BsuRI	GGCC	2 cut(s)	58, 284
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	328, 545, 760
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	3 cut(s)	99, 615, 698
Cac8I	GCNNGC	3 cut(s)	220, 282, 785
CfoI	GCGC	2 cut(s)	77, 562
Cfr13I	GGNCC	1 cut(s)	653
CseI	GACGC	1 cut(s)	672
CspCI	CAANNNNNGTGG	2 cut(s)	75, 110
CviAII	CATG	2 cut(s)	734, 803
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	2 cut(s)	262, 501
DpnII	GATC	2 cut(s)	260, 499
DraI	TTTAAA	2 cut(s)	376, 750
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
Eco24I	GRGCYC	2 cut(s)	117, 646
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	117, 646
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	2 cut(s)	737, 806
FatI	CATG	2 cut(s)	733, 802
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	2 cut(s)	170, 686
Fnu4HI	GCNGC	4 cut(s)	78, 160, 278, 816
FokI	GGATG	3 cut(s)	335, 552, 767
FriOI	GRGCYC	2 cut(s)	117, 646
Fsp4HI	GCNGC	4 cut(s)	78, 160, 278, 816
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	2 cut(s)	76, 561
GluI	GCNGC	4 cut(s)	78, 160, 278, 816
GsaI	CCCAGC	1 cut(s)	650
GsuI	CTGGAG	1 cut(s)	208
HaeII	RGCGCY	2 cut(s)	78, 563
HaeIII	GGCC	2 cut(s)	58, 284
HapII	CCGG	2 cut(s)	72, 238
HgaI	GACGC	1 cut(s)	672
HhaI	GCGC	2 cut(s)	77, 562
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	737, 806
Hin6I	GCGC	2 cut(s)	75, 560
HinP1I	GCGC	2 cut(s)	75, 560
HincII	GTYRAC	2 cut(s)	171, 687
HindII	GTYRAC	2 cut(s)	171, 687
HindIII	AAGCTT	1 cut(s)	744
HpaII	CCGG	2 cut(s)	72, 238
HphI	GGTGA	2 cut(s)	174, 455
Hpy166II	GTNNAC	3 cut(s)	171, 687, 869
Hpy188I	TCNGA	2 cut(s)	244, 434
Hpy188III	TCNNGA	2 cut(s)	419, 718
Hpy8I	GTNNAC	3 cut(s)	171, 687, 869
Hpy99I	CGWCG	2 cut(s)	172, 688
HpyAV	CCTTC	2 cut(s)	449, 853
HpyCH4III	ACNGT	4 cut(s)	168, 575, 691, 702
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	6 cut(s)	80, 543, 583, 624, 698, 826
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	106
HpySE526I	ACGT	1 cut(s)	630
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	737, 806
HspAI	GCGC	2 cut(s)	75, 560
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	260, 499
LmnI	GCTCC	3 cut(s)	227, 244, 804
Lsp1109I	GCAGC	3 cut(s)	64, 289, 802
LweI	GCATC	5 cut(s)	89, 436, 530, 745, 835
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	3 cut(s)	195, 227, 472
MalI	GATC	2 cut(s)	262, 501
MboI	GATC	2 cut(s)	260, 499
MboII	GAAGA	3 cut(s)	215, 765, 902
MfeI	CAATTG	1 cut(s)	578
MhlI	GDGCHC	2 cut(s)	117, 646
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	5 cut(s)	120, 178, 301, 517, 578
MluNI	TGGCCA	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	9 cut(s)	52, 69, 79, 115, 224, 313, 402, 415, 798
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	7 cut(s)	137, 314, 375, 492, 636, 749, 873
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	2 cut(s)	159, 280
MspI	CCGG	2 cut(s)	72, 238
MspR9I	CCNGG	1 cut(s)	238
MunI	CAATTG	1 cut(s)	578
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	2 cut(s)	260, 499
NlaIII	CATG	2 cut(s)	737, 806
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	195, 227
NspI	RCATGY	1 cut(s)	737
NspV	TTCGAA	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	79, 161, 279, 817
PspFI	CCCAGC	1 cut(s)	646
PspPI	GGNCC	1 cut(s)	653
PvuII	CAGCTG	1 cut(s)	280
SalI	GTCGAC	2 cut(s)	169, 685
SaqAI	TTAA	7 cut(s)	137, 314, 375, 492, 636, 749, 873
SatI	GCNGC	4 cut(s)	78, 160, 278, 816
Sau3AI	GATC	2 cut(s)	260, 499
Sau96I	GGNCC	1 cut(s)	653
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	117, 646
SfaNI	GCATC	5 cut(s)	89, 436, 530, 745, 835
SfuI	TTCGAA	1 cut(s)	124
SinI	GGWCC	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	5 cut(s)	120, 178, 301, 517, 578
SsiI	CCGC	2 cut(s)	90, 159
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	236
TaaI	ACNGT	4 cut(s)	168, 575, 691, 702
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	6 cut(s)	44, 124, 170, 176, 395, 686
TasI	AATT	5 cut(s)	120, 178, 301, 517, 578
TauI	GCSGC	1 cut(s)	162
Tru1I	TTAA	7 cut(s)	137, 314, 375, 492, 636, 749, 873
Tru9I	TTAA	7 cut(s)	137, 314, 375, 492, 636, 749, 873
TscAI	CASTG	3 cut(s)	99, 622, 705
TseFI	GTSAC	2 cut(s)	195, 227
TseI	GCWGC	3 cut(s)	77, 277, 815
Tsp45I	GTSAC	2 cut(s)	195, 227
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	2 cut(s)	51, 421
TspRI	CASTG	3 cut(s)	99, 622, 705
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	737
XmiI	GTMKAC	2 cut(s)	170, 686
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.