Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001489

Physical Location & Seq

Genomic Coordinates Reverse (-)

4178934 .. 4182726

Gene Structure 3793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1037400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTGCCTCTGGTTCCAAGACCCATCCTCCTTCCTCTTCTTCCAAACCTCCCAAGAACCCGACGAGCCTCAACCCGATCACTGAAACCCAAACCCCAAACTCTGACCCCTCCACCTCCACAATCCCTCCTATCCCACCGTCCCAAGAAGAAATCGACCTCTCGCGCGCCTCCCACATCACCCACCACGAGCTCATCCGCCGCCGCCGCTCCTACCTCAGGGAGCTCAAAAAATGCTACAAATCCCACTACTGGGCACTCATGGAGGAGCTCCGGATTGGGTACAGAGAGTACTGGTGGAACTACGGTGTCAGCCCTTACAAGGAAGAGCACAGGAGCGAGAGAGACGCTGCTGGGGTTGCTGAAGGCACTGATGAGAACAACAACAACATAAACGGAAATTGCAACAACAATAATCGTGGTGCTGCCGCCGGCTTCGATGCCAGAAGGAAACTGCAATGTGCTTCTCAGCAGTGTAAAGCCAAGGCCATGGCGATGACGAGCTTTTGCCACCTTCATATTCTTTCGGATCCGAAGCAGAAGCTCTATAAGCCTTGTGATTATGTTATCAAGAGTGCTCAGGCAGGACCTATAACCTGTGGGAAGCCGATACTGAGATCCACTGTTCCCTCTCTTTGCCCAATTCACTTCCAAGTGGCTCAGAAGGCTGTCAGAAGGGCCTTGAAGAAGGCAGGCCTGAATATGTCCTCATCAAGTAAGCTGGCTCCAAAGTTCCATGTCATAATAGCGGAATACGTACGCCAAATTCAGGCCAAACGAAGAACTGCACAAAGAGCCAAGGGAAAAAAGGTCGCAATTAAGGAAGAAAATGCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3Hc3H

Protein Analysis

280

Amino Acids

31.24

Weight (kDa)

9.77

Isoelectric Point (pI)

58.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC3H_KANSL2	PF13891	154 - 217	1.4e-17	KANL2-like, probable zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05860 AT1G05860 AT1G05860 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT3G53860
fragaria_vesca	FvH4_2g08280 FvH4_2g08280 FvH4_2g08280 FvH4_4g11360
malus_domestica	MD04G1037400.v1.1 MD04G1037500.v1.1 MD04G1188100.v1.1
prunus_persica	Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1
pyrus_communis	pycom04g03050 pycom04g03060
rosa_chinensis	RchiOBHm_Chr4g0407911 RchiOBHm_Chr6g0263161 RchiOBHm_Chr6g0273581
rosa_laevigata	RLG00000008679 RLG00000008682 RLG00000014367
rosa_multiflora	Rmu_co8062746.1_g000001 Rmu_sc0002073.1_g000013 Rmu_sc0002481.1_g000059 Rmu_sc0041685.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430970 Rroxscaffold_5G00352520 Rroxscaffold_7G00204610
rosa_rugosa	Rorug04G0083000 Rorug04G0083100 Rorug06G0004000
rosa_samantha	Rh4AG147300 Rh4BG145000 Rh4CG154200 Rh4DG141400 Rh6AG123100 Rh6BG118100 Rh6CG116300 Rh6DG104800 Rh6DG186100
rosa_wichuraiana	Rw0G018640 Rw4G012090 Rw6G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	210
AccII	CGCG	2 cut(s)	166, 168
AccIII	TCCGGA	1 cut(s)	273
AciI	CCGC	6 cut(s)	199, 202, 205, 208, 429, 749
AclWI	GGATC	3 cut(s)	524, 537, 612
AcsI	RAATTY	1 cut(s)	765
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	3 cut(s)	284, 293, 759
AfiI	CCNNNNNNNGG	5 cut(s)	219, 252, 253, 322, 769
AgsI	TTSAA	1 cut(s)	685
AluBI	AGCT	6 cut(s)	193, 226, 271, 504, 544, 721
AluI	AGCT	6 cut(s)	193, 226, 271, 504, 544, 721
Alw21I	GWGCWC	5 cut(s)	195, 228, 273, 333, 580
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	3 cut(s)	524, 537, 612
Aor13HI	TCCGGA	1 cut(s)	273
AoxI	GGCC	4 cut(s)	486, 678, 694, 771
ApeKI	GCWGC	3 cut(s)	5, 350, 425
ApoI	RAATTY	1 cut(s)	765
AspLEI	GCGC	2 cut(s)	168, 170
AspS9I	GGNCC	2 cut(s)	587, 678
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	587
AxyI	CCTNAGG	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	259
BamHI	GGATCC	1 cut(s)	529
BanII	GRGCYC	3 cut(s)	195, 228, 273
BauI	CACGAG	1 cut(s)	188
Bbv12I	GWGCWC	5 cut(s)	195, 228, 273, 333, 580
BbvI	GCAGC	2 cut(s)	337, 412
BccI	CCATC	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	339
BisI	GCNGC	7 cut(s)	6, 202, 205, 208, 351, 426, 429
BlsI	GCNGC	7 cut(s)	7, 203, 206, 209, 352, 427, 430
BmcAI	AGTACT	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	2 cut(s)	587, 678
BmiI	GGNNCC	3 cut(s)	16, 531, 726
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	579
BsaAI	YACGTR	1 cut(s)	757
BsaJI	CCNNGG	3 cut(s)	483, 489, 798
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 112, 142
Bsc4I	CCNNNNNNNGG	5 cut(s)	219, 252, 253, 322, 769
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	2 cut(s)	257, 299
Bse21I	CCTNAGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	464
BseAI	TCCGGA	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	483, 489, 798
BseGI	GGATG	2 cut(s)	25, 195
BseLI	CCNNNNNNNGG	5 cut(s)	219, 252, 253, 322, 769
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	5 cut(s)	232, 482, 593, 605, 674
BseNI	ACTGG	2 cut(s)	257, 299
BsePI	GCGCGC	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	281
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	337, 412
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	771
Bsh1236I	CGCG	2 cut(s)	166, 168
BshFI	GGCC	4 cut(s)	488, 680, 696, 773
BsiHKAI	GWGCWC	5 cut(s)	195, 228, 273, 333, 580
BsiSI	CCGG	2 cut(s)	274, 432
BsiWI	CGTACG	1 cut(s)	757
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	5 cut(s)	219, 252, 253, 322, 769
BsmAI	GTCTC	1 cut(s)	339
BsmBI	CGTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	4 cut(s)	488, 680, 696, 773
Bsp1286I	GDGCHC	6 cut(s)	195, 228, 259, 273, 333, 580
Bsp13I	TCCGGA	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	78, 529, 617
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	6 cut(s)	199, 202, 205, 208, 429, 749
BspANI	GGCC	4 cut(s)	488, 680, 696, 773
BspCNI	CTCAG	5 cut(s)	231, 481, 592, 606, 673
BspEI	TCCGGA	1 cut(s)	273
BspFNI	CGCG	2 cut(s)	166, 168
BspLI	GGNNCC	3 cut(s)	16, 531, 726
BspPI	GGATC	3 cut(s)	524, 537, 612
BspQI	GCTCTTC	1 cut(s)	321
BsrBI	CCGCTC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	2 cut(s)	257, 299
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	3 cut(s)	483, 489, 798
BssHII	GCGCGC	1 cut(s)	166
BssMI	GATC	3 cut(s)	78, 529, 617
BssSI	CACGAG	1 cut(s)	188
BssT1I	CCWWGG	3 cut(s)	483, 489, 798
Bst2BI	CACGAG	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	141, 308, 625
Bst6I	CTCTTC	2 cut(s)	43, 321
BstBAI	YACGTR	1 cut(s)	757
BstC8I	GCNNGC	4 cut(s)	168, 433, 694, 723
BstDEI	CTNAG	5 cut(s)	218, 468, 579, 614, 660
BstDSI	CCRYGG	1 cut(s)	489
BstENI	CCTNNNNNAGG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	25, 195
BstFNI	CGCG	2 cut(s)	166, 168
BstHHI	GCGC	2 cut(s)	168, 170
BstKTI	GATC	3 cut(s)	81, 532, 620
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	78, 529, 617
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 359, 550, 665, 794
BstSLI	GKGCMC	1 cut(s)	259
BstSNI	TACGTA	1 cut(s)	757
BstUI	CGCG	2 cut(s)	166, 168
BstV1I	GCAGC	2 cut(s)	337, 412
BstX2I	RGATCY	2 cut(s)	529, 617
BstXI	CCANNNNNNTGG	1 cut(s)	490
BstYI	RGATCY	2 cut(s)	529, 617
Bsu36I	CCTNAGG	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	488, 680, 696, 773
BtgI	CCRYGG	1 cut(s)	489
BtgZI	GCGATG	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	25, 195
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	4 cut(s)	81, 369, 479, 621
Cac8I	GCNNGC	4 cut(s)	168, 433, 694, 723
CfoI	GCGC	2 cut(s)	168, 170
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	587, 678
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	3 cut(s)	283, 292, 758
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	3 cut(s)	262, 490, 737
CviQI	GTAC	3 cut(s)	283, 292, 758
DdeI	CTNAG	5 cut(s)	218, 468, 579, 614, 660
DpnI	GATC	3 cut(s)	80, 531, 619
DpnII	GATC	3 cut(s)	78, 529, 617
Eam1104I	CTCTTC	2 cut(s)	43, 321
EarI	CTCTTC	2 cut(s)	43, 321
EciI	GGCGGA	1 cut(s)	188
Ecl136II	GAGCTC	3 cut(s)	193, 226, 271
Eco105I	TACGTA	1 cut(s)	757
Eco130I	CCWWGG	3 cut(s)	483, 489, 798
Eco147I	AGGCCT	1 cut(s)	696
Eco24I	GRGCYC	3 cut(s)	195, 228, 273
Eco47I	GGWCC	1 cut(s)	587
Eco53kI	GAGCTC	3 cut(s)	193, 226, 271
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	218
EcoICRI	GAGCTC	3 cut(s)	193, 226, 271
EcoNI	CCTNNNNNAGG	1 cut(s)	217
EcoO109I	RGGNCCY	2 cut(s)	587, 678
EcoT14I	CCWWGG	3 cut(s)	483, 489, 798
EcoT38I	GRGCYC	3 cut(s)	195, 228, 273
ErhI	CCWWGG	3 cut(s)	483, 489, 798
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	3 cut(s)	265, 493, 740
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	3 cut(s)	261, 489, 736
Fnu4HI	GCNGC	7 cut(s)	6, 202, 205, 208, 351, 426, 429
FokI	GGATG	2 cut(s)	12, 182
FriOI	GRGCYC	3 cut(s)	195, 228, 273
Fsp4HI	GCNGC	7 cut(s)	6, 202, 205, 208, 351, 426, 429
GlaI	GCGC	2 cut(s)	167, 169
GluI	GCNGC	7 cut(s)	6, 202, 205, 208, 351, 426, 429
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	4 cut(s)	488, 680, 696, 773
HapII	CCGG	2 cut(s)	274, 432
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	2 cut(s)	168, 170
Hin1II	CATG	3 cut(s)	265, 493, 740
Hin6I	GCGC	2 cut(s)	166, 168
HinP1I	GCGC	2 cut(s)	166, 168
HpaII	CCGG	2 cut(s)	274, 432
HphI	GGTGA	1 cut(s)	172
Hpy188I	TCNGA	5 cut(s)	106, 529, 534, 663, 674
Hpy188III	TCNNGA	2 cut(s)	274, 571
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	7 cut(s)	42, 359, 441, 524, 658, 669, 682
HpyCH4III	ACNGT	3 cut(s)	141, 308, 625
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	3 cut(s)	405, 457, 788
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 359, 550, 665, 794
HpyF3I	CTNAG	5 cut(s)	218, 468, 579, 614, 660
HpySE526I	ACGT	1 cut(s)	756
Hsp92II	CATG	3 cut(s)	265, 493, 740
HspAI	GCGC	2 cut(s)	166, 168
Kpn2I	TCCGGA	1 cut(s)	273
KroI	GCCGGC	1 cut(s)	431
KroNI	GCCGGC	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	78, 529, 617
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	6 cut(s)	215, 223, 268, 276, 336, 730
Lsp1109I	GCAGC	2 cut(s)	337, 412
LweI	GCATC	1 cut(s)	430
MaeII	ACGT	1 cut(s)	756
MalI	GATC	3 cut(s)	80, 531, 619
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	3 cut(s)	78, 529, 617
MboII	GAAGA	7 cut(s)	30, 33, 161, 338, 697, 792, 836
MflI	RGATCY	2 cut(s)	529, 617
MhlI	GDGCHC	6 cut(s)	195, 228, 259, 273, 333, 580
MluCI	AATT	4 cut(s)	400, 642, 765, 816
MroI	TCCGGA	1 cut(s)	273
MroNI	GCCGGC	1 cut(s)	431
MseI	TTAA	1 cut(s)	819
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	2 cut(s)	274, 432
MvnI	CGCG	2 cut(s)	166, 168
MwoI	GCNNNNNNNGC	5 cut(s)	207, 359, 550, 665, 794
NaeI	GCCGGC	1 cut(s)	433
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	3 cut(s)	78, 529, 617
NgoMIV	GCCGGC	1 cut(s)	431
NlaIII	CATG	3 cut(s)	265, 493, 740
NlaIV	GGNNCC	3 cut(s)	16, 531, 726
PauI	GCGCGC	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	321
PdiI	GCCGGC	1 cut(s)	433
Pfl23II	CGTACG	1 cut(s)	757
PkrI	GCNGC	7 cut(s)	7, 203, 206, 209, 352, 427, 430
Ppu21I	YACGTR	1 cut(s)	757
PpuMI	RGGWCCY	1 cut(s)	587
Psp124BI	GAGCTC	3 cut(s)	195, 228, 273
Psp5II	RGGWCCY	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	353
PspLI	CGTACG	1 cut(s)	757
PspN4I	GGNNCC	3 cut(s)	16, 531, 726
PspPI	GGNCC	2 cut(s)	587, 678
PspPPI	RGGWCCY	1 cut(s)	587
PsuI	RGATCY	2 cut(s)	529, 617
PteI	GCGCGC	1 cut(s)	166
RsaI	GTAC	3 cut(s)	284, 293, 759
RsaNI	GTAC	3 cut(s)	283, 292, 758
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	3 cut(s)	195, 228, 273
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	819
SatI	GCNGC	7 cut(s)	6, 202, 205, 208, 351, 426, 429
Sau3AI	GATC	3 cut(s)	78, 529, 617
Sau96I	GGNCC	2 cut(s)	587, 678
ScaI	AGTACT	1 cut(s)	293
SduI	GDGCHC	6 cut(s)	195, 228, 259, 273, 333, 580
SfaNI	GCATC	1 cut(s)	430
SinI	GGWCC	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	494
SnaBI	TACGTA	1 cut(s)	757
Sse9I	AATT	4 cut(s)	400, 642, 765, 816
SseBI	AGGCCT	1 cut(s)	696
SsiI	CCGC	6 cut(s)	199, 202, 205, 208, 429, 749
SstI	GAGCTC	3 cut(s)	195, 228, 273
StuI	AGGCCT	1 cut(s)	696
StyI	CCWWGG	3 cut(s)	483, 489, 798
TaaI	ACNGT	3 cut(s)	141, 308, 625
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	2 cut(s)	156, 438
TasI	AATT	4 cut(s)	400, 642, 765, 816
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	4 cut(s)	204, 207, 210, 431
Tru1I	TTAA	1 cut(s)	819
Tru9I	TTAA	1 cut(s)	819
TscAI	CASTG	4 cut(s)	88, 376, 479, 628
TseI	GCWGC	3 cut(s)	5, 350, 425
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	4 cut(s)	88, 376, 479, 628
VpaK11BI	GGWCC	1 cut(s)	587
XagI	CCTNNNNNAGG	1 cut(s)	217
XapI	RAATTY	1 cut(s)	765
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.