RchiOBHm_Chr6g0263161

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001489
Physical Location & Seq
Reverse (-)
17950947 .. 17955273
4327 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23602

Sequence Viewer

Length: 684 bp
ATGACTGGTGGCGCCTCCTCTGCTTCCAGACCCCCACCGGAGGATCACCCCATCACCGCCGCCGAAATCCCTTCCACCTCCGCCGCCGTCTCTCCCGTACAATCCATGGTCCCGCGCCAAGAGGTCCTCCGCCGCCGTTCTCAGAACCTGAAGCAACTGACCAAATGCTACAGAGACCACTACTGGGCCTTGATGGAGGACCTCAAGATCCACTACAGGGACTACTACTGGAACTACGGTGTCAGCCCCCTCCAGTTTAAACCGCTGCAAGACAATGCCGATGACGGAAATATCAACCGCCGCTGCGCTTCCGTCGGCTGTAAATTGACCGCCATGGCCTTGACGAGCTTTTGTCATCTCCATATTCTCTCGGATTCCAAGCAGAGGCTCTATAAGGCTTGCGATTATGTTATCAAGAGTGCTCAGGCAGGACCTATAACATGCGGGAAGCCAATATTAAGATCCACTACTCCTTCTCTTTGTGCTGTCCACTTCCAAAAGGCTCAGAAGCATGTTACCAGGGCCTTGCGGAAGGCAGGTCTTAATGTTTCCTCATCAAGTAAGCTTGCTCCTAAGTTCCATGTAATACTGGCAGAATATGTACACCAAATTCAATCCATGCGAAAAGCTGCACGAAAGGAAAATAGAAGTAAAGTTGCTATTAAGGAAGAAGCTGTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

227

Amino Acids

25.41

Weight (kDa)

9.7

Isoelectric Point (pI)

62.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 102 - 165 1.8e-16 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 527
AccB1I GGYRCC 1 cut(s) 11
AccI GTMKAC 1 cut(s) 678
AccII CGCG 1 cut(s) 115
AclWI GGATC 3 cut(s) 51, 202, 456
AcsI RAATTY 1 cut(s) 609
AcuI CTGAAG 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 2 cut(s) 99, 603
AfiI CCNNNNNNNGG 4 cut(s) 40, 184, 217, 384
AgsI TTSAA 1 cut(s) 614
AjnI CCWGG 1 cut(s) 518
AluBI AGCT 4 cut(s) 348, 565, 629, 674
AluI AGCT 4 cut(s) 348, 565, 629, 674
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 2 cut(s) 94, 168
AlwI GGATC 3 cut(s) 51, 202, 456
AlwNI CAGNNNCTG 1 cut(s) 148
AoxI GGCC 3 cut(s) 186, 336, 522
ApeKI GCWGC 3 cut(s) 265, 303, 629
ApoI RAATTY 1 cut(s) 609
AspLEI GCGC 3 cut(s) 14, 117, 308
AspS9I GGNCC 6 cut(s) 109, 124, 186, 199, 431, 522
AsuHPI GGTGA 2 cut(s) 38, 46
AvaII GGWCC 4 cut(s) 109, 124, 199, 431
BanI GGYRCC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 3 cut(s) 252, 290, 616
BccI CCATC 2 cut(s) 59, 187
BceAI ACGGC 2 cut(s) 71, 120
BciT130I CCWGG 1 cut(s) 520
BcoDI GTCTC 2 cut(s) 94, 168
BfmI CTRYAG 2 cut(s) 169, 214
BfoI RGCGCY 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 527
BisI GCNGC 7 cut(s) 60, 84, 133, 266, 301, 304, 630
BlsI GCNGC 7 cut(s) 61, 85, 134, 267, 302, 305, 631
Bme1390I CCNGG 1 cut(s) 520
Bme18I GGWCC 4 cut(s) 109, 124, 199, 431
BmgT120I GGNCC 6 cut(s) 109, 124, 186, 199, 431, 522
BmiI GGNNCC 2 cut(s) 13, 111
BmrFI CCNGG 1 cut(s) 520
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 236
Bpu10I CCTNAGC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 105, 333, 519
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 184, 217, 384
Bse1I ACTGG 5 cut(s) 10, 188, 233, 253, 594
BseBI CCWGG 1 cut(s) 520
BseDI CCNNGG 3 cut(s) 105, 333, 519
BseLI CCNNNNNNNGG 4 cut(s) 40, 184, 217, 384
BseMII CTCAG 3 cut(s) 155, 437, 518
BseNI ACTGG 5 cut(s) 10, 188, 233, 253, 594
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 3 cut(s) 252, 290, 616
BsgI GTGCAG 1 cut(s) 615
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 3 cut(s) 188, 338, 524
BshNI GGYRCC 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 424
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 2 cut(s) 95, 233
BslI CCNNNNNNNGG 4 cut(s) 40, 184, 217, 384
BsmAI GTCTC 2 cut(s) 94, 168
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 95, 233
BsnI GGCC 3 cut(s) 188, 338, 524
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 424
Bsp1407I TGTACA 1 cut(s) 601
Bsp143I GATC 3 cut(s) 43, 207, 461
Bsp19I CCATGG 2 cut(s) 105, 333
BspANI GGCC 3 cut(s) 188, 338, 524
BspCNI CTCAG 3 cut(s) 154, 436, 517
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 13, 111
BspMI ACCTGC 1 cut(s) 527
BspPI GGATC 3 cut(s) 51, 202, 456
BspT107I GGYRCC 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 601
BsrI ACTGG 5 cut(s) 10, 188, 233, 253, 594
BssECI CCNNGG 3 cut(s) 105, 333, 519
BssMI GATC 3 cut(s) 43, 207, 461
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 2 cut(s) 105, 333
Bst2UI CCWGG 1 cut(s) 520
Bst4CI ACNGT 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 601
BstC8I GCNNGC 2 cut(s) 400, 567
BstDEI CTNAG 4 cut(s) 141, 423, 504, 573
BstDSI CCRYGG 2 cut(s) 105, 333
BstFNI CGCG 1 cut(s) 115
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 3 cut(s) 14, 117, 308
BstKTI GATC 3 cut(s) 46, 210, 464
BstMAI GTCTC 2 cut(s) 94, 168
BstMBI GATC 3 cut(s) 43, 207, 461
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 520
BstNSI RCATGY 2 cut(s) 444, 515
BstSCI CCNGG 1 cut(s) 518
BstSFI CTRYAG 2 cut(s) 169, 214
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 3 cut(s) 252, 290, 616
BstX2I RGATCY 2 cut(s) 207, 461
BstYI RGATCY 2 cut(s) 207, 461
BsuRI GGCC 3 cut(s) 188, 338, 524
BtgI CCRYGG 2 cut(s) 105, 333
BveI ACCTGC 1 cut(s) 527
Cac8I GCNNGC 2 cut(s) 400, 567
CaiI CAGNNNCTG 1 cut(s) 148
CfoI GCGC 3 cut(s) 14, 117, 308
Cfr13I GGNCC 6 cut(s) 109, 124, 186, 199, 431, 522
Csp6I GTAC 2 cut(s) 98, 602
CviAII CATG 6 cut(s) 106, 334, 441, 512, 581, 619
CviQI GTAC 2 cut(s) 98, 602
DdeI CTNAG 4 cut(s) 141, 423, 504, 573
DinI GGCGCC 1 cut(s) 13
DpnI GATC 3 cut(s) 45, 209, 463
DpnII GATC 3 cut(s) 43, 207, 461
DraI TTTAAA 1 cut(s) 259
EciI GGCGGA 2 cut(s) 70, 119
Eco130I CCWWGG 2 cut(s) 105, 333
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 4 cut(s) 109, 124, 199, 431
Eco57I CTGAAG 1 cut(s) 170
EcoO109I RGGNCCY 4 cut(s) 124, 199, 431, 522
EcoRII CCWGG 1 cut(s) 518
EcoT14I CCWWGG 2 cut(s) 105, 333
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 2 cut(s) 105, 333
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 6 cut(s) 109, 337, 444, 515, 584, 622
FaqI GGGAC 2 cut(s) 95, 233
FatI CATG 6 cut(s) 105, 333, 440, 511, 580, 618
FauI CCCGC 2 cut(s) 120, 437
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 7 cut(s) 60, 84, 133, 266, 301, 304, 630
Fsp4HI GCNGC 7 cut(s) 60, 84, 133, 266, 301, 304, 630
GlaI GCGC 3 cut(s) 13, 116, 307
GluI GCNGC 7 cut(s) 60, 84, 133, 266, 301, 304, 630
GsuI CTGGAG 1 cut(s) 236
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 3 cut(s) 188, 338, 524
HapII CCGG 1 cut(s) 38
HhaI GCGC 3 cut(s) 14, 117, 308
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 6 cut(s) 109, 337, 444, 515, 584, 622
Hin6I GCGC 3 cut(s) 12, 115, 306
HinP1I GCGC 3 cut(s) 12, 115, 306
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 1 cut(s) 374
HpaII CCGG 1 cut(s) 38
HphI GGTGA 2 cut(s) 38, 46
Hpy166II GTNNAC 3 cut(s) 490, 604, 679
Hpy188I TCNGA 3 cut(s) 144, 373, 507
Hpy188III TCNNGA 3 cut(s) 27, 205, 415
Hpy8I GTNNAC 3 cut(s) 490, 604, 679
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 81, 483, 526
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 268, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 4 cut(s) 141, 423, 504, 573
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 6 cut(s) 109, 337, 444, 515, 584, 622
HspAI GCGC 3 cut(s) 12, 115, 306
KasI GGCGCC 1 cut(s) 11
Kzo9I GATC 3 cut(s) 43, 207, 461
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 3 cut(s) 252, 290, 616
MaeIII GTNAC 1 cut(s) 514
MalI GATC 3 cut(s) 45, 209, 463
MboI GATC 3 cut(s) 43, 207, 461
MboII GAAGA 1 cut(s) 680
MflI RGATCY 2 cut(s) 207, 461
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 2 cut(s) 323, 609
Mly113I GGCGCC 1 cut(s) 12
MseI TTAA 4 cut(s) 258, 458, 543, 663
MspA1I CMGCKG 2 cut(s) 265, 303
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 520
MssI GTTTAAAC 1 cut(s) 259
MvaI CCWGG 1 cut(s) 520
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 20
NarI GGCGCC 1 cut(s) 12
NcoI CCATGG 2 cut(s) 105, 333
NdeII GATC 3 cut(s) 43, 207, 461
NlaIII CATG 6 cut(s) 109, 337, 444, 515, 584, 622
NlaIV GGNNCC 2 cut(s) 13, 111
NspI RCATGY 2 cut(s) 444, 515
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 7 cut(s) 61, 85, 134, 267, 302, 305, 631
PluTI GGCGCC 1 cut(s) 15
PmeI GTTTAAAC 1 cut(s) 259
PpuMI RGGWCCY 3 cut(s) 124, 199, 431
Psp5II RGGWCCY 3 cut(s) 124, 199, 431
Psp6I CCWGG 1 cut(s) 518
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 2 cut(s) 13, 111
PspPI GGNCC 6 cut(s) 109, 124, 186, 199, 431, 522
PspPPI RGGWCCY 3 cut(s) 124, 199, 431
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 2 cut(s) 207, 461
RsaI GTAC 2 cut(s) 99, 603
RsaNI GTAC 2 cut(s) 98, 602
SalI GTCGAC 1 cut(s) 677
SaqAI TTAA 4 cut(s) 258, 458, 543, 663
SatI GCNGC 7 cut(s) 60, 84, 133, 266, 301, 304, 630
Sau3AI GATC 3 cut(s) 43, 207, 461
Sau96I GGNCC 6 cut(s) 109, 124, 186, 199, 431, 522
ScrFI CCNGG 1 cut(s) 520
SduI GDGCHC 1 cut(s) 424
SfcI CTRYAG 2 cut(s) 169, 214
SfoI GGCGCC 1 cut(s) 13
SinI GGWCC 4 cut(s) 109, 124, 199, 431
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 323, 609
SspDI GGCGCC 1 cut(s) 11
SspI AATATT 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 518
StyI CCWWGG 2 cut(s) 105, 333
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 678
TasI AATT 2 cut(s) 323, 609
TatI WGTACW 1 cut(s) 601
TauI GCSGC 4 cut(s) 62, 86, 135, 303
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 4 cut(s) 258, 458, 543, 663
Tru9I TTAA 4 cut(s) 258, 458, 543, 663
TseI GCWGC 3 cut(s) 265, 303, 629
TspGWI ACGGA 2 cut(s) 300, 301
VpaK11BI GGWCC 4 cut(s) 109, 124, 199, 431
XapI RAATTY 1 cut(s) 609
XceI RCATGY 2 cut(s) 444, 515
XmiI GTMKAC 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.