Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001489

Physical Location & Seq

Genomic Coordinates Reverse (-)

2827704 .. 2831175

Gene Structure 3472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCCTTTTATTAGGGCCAGAAGTATTTTACAGAAGTTGTATGTCACCGGCACTCTCACACAATTGTTTCCGACTCTCTCAAACACACGCACAGCAAAACAACCCTTGCCCTTCCTTGCTCCCATGGCTGCCTCTGGTTCCAAGACTCATGCTTCCTCTTGCTACAAACCTCCCAAGAACCCCATAACCCTCAATCCCATCCCTGAAACCCTAATCCCTAACCCTTCTACCTCTACAATCCCTCCTATCCCACCCACCCAAGAAGAAATCGCCCTCTCACTTGCCTCCCACATCACGCGCGAACAGCTCCTCCGCCGCCGTTCCCACCTCCTCAAGCAACTCATCAAATGCTACAAAGCCCACTACTGGGCCCTCATGGAGGATCTCAGGATTTGGTACAGGGAGTACTGGTGGAAGTACGGCGTCAGCCCTTACAAAGAAGAGCACAGGAGCGAGAGAGACGCCGCTGGGGTTGCTGAAGGCACTGATGAGAACAATAACAACATCAACAGCAATTACAACAACAATGGCGGTCCTGCGGCCGACTTCGATTCGAAAAAGAAACTGCAATGCGCTTTTAAAGAGTGCAAGACGAAGGCCATGGCAATGACGAGCTTTTGTCACCTCCATATTCTTTCGGATTCGAAGCAGAAGCTCTATAAGCCCTGTAGTTATGTTATTAAGAGTGCTCAGGCAATAACCTGCGGGAAGCCAATACTGAGATCTACTGTTCCTTCTCTTTGTGCTTCTCACTTCCAAATAAATCAGAAGAATATCAGGAAGGCCTTGAAGAAGGCAGGCCTTAATAACACCTTATCAAGTAAGTTTGCTCCAACATTCCATGTCGTATTAGCAGAATGTGTACGCCAAATTAAGGCCAAACGAAGAACGGCACAAAGGGCAAAGGGAAAAAAAGTTGCAGTTAAGGAAGAAAACGCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3Hc3H

Protein Analysis

315

Amino Acids

35.37

Weight (kDa)

9.86

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC3H_KANSL2	PF13891	191 - 252	2.8e-17	KANL2-like, probable zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05860 AT1G05860 AT1G05860 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT3G53860
fragaria_vesca	FvH4_2g08280 FvH4_2g08280 FvH4_2g08280 FvH4_4g11360
malus_domestica	MD04G1037400.v1.1 MD04G1037500.v1.1 MD04G1188100.v1.1
prunus_persica	Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1
pyrus_communis	pycom04g03050 pycom04g03060
rosa_chinensis	RchiOBHm_Chr4g0407911 RchiOBHm_Chr6g0263161 RchiOBHm_Chr6g0273581
rosa_laevigata	RLG00000008679 RLG00000008682 RLG00000014367
rosa_multiflora	Rmu_co8062746.1_g000001 Rmu_sc0002073.1_g000013 Rmu_sc0002481.1_g000059 Rmu_sc0041685.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430970 Rroxscaffold_5G00352520 Rroxscaffold_7G00204610
rosa_rugosa	Rorug04G0083000 Rorug04G0083100 Rorug06G0004000
rosa_samantha	Rh4AG147300 Rh4BG145000 Rh4CG154200 Rh4DG141400 Rh6AG123100 Rh6BG118100 Rh6CG116300 Rh6DG104800 Rh6DG186100
rosa_wichuraiana	Rw0G018640 Rw4G012090 Rw6G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	710
AccII	CGCG	2 cut(s)	298, 300
AciI	CCGC	6 cut(s)	313, 316, 465, 531, 539, 705
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	1 cut(s)	540
AcuI	CTGAAG	1 cut(s)	498
AcyI	GRCGYC	2 cut(s)	423, 462
AfaI	GTAC	4 cut(s)	398, 407, 419, 864
AfiI	CCNNNNNNNGG	4 cut(s)	366, 367, 379, 874
AgsI	TTSAA	1 cut(s)	790
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	3 cut(s)	307, 615, 655
AluI	AGCT	3 cut(s)	307, 615, 655
Alw21I	GWGCWC	2 cut(s)	447, 691
Alw26I	GTCTC	1 cut(s)	453
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	7 cut(s)	15, 369, 540, 597, 783, 799, 876
ApaI	GGGCCC	1 cut(s)	373
ApeKI	GCWGC	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	300, 575
AspS9I	GGNCC	4 cut(s)	15, 369, 370, 533
AsuHPI	GGTGA	2 cut(s)	37, 614
AsuII	TTCGAA	2 cut(s)	554, 644
AvaII	GGWCC	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	373
Bbv12I	GWGCWC	2 cut(s)	447, 691
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	3 cut(s)	303, 436, 906
BcoDI	GTCTC	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	667
BfuAI	ACCTGC	1 cut(s)	710
BglII	AGATCT	1 cut(s)	722
BisI	GCNGC	4 cut(s)	129, 316, 465, 540
BlsI	GCNGC	4 cut(s)	130, 317, 466, 541
BmcAI	AGTACT	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	533
BmgT120I	GGNCC	4 cut(s)	15, 369, 370, 533
BmiI	GGNNCC	2 cut(s)	139, 371
BmrI	ACTGGG	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	376
Bpu10I	CCTNAGC	1 cut(s)	690
Bpu14I	TTCGAA	2 cut(s)	554, 644
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	2 cut(s)	423, 462
BsaJI	CCNNGG	2 cut(s)	123, 600
BsaXI	ACNNNNNCTCC	6 cut(s)	226, 256, 294, 324, 395, 425
Bsc4I	CCNNNNNNNGG	4 cut(s)	366, 367, 379, 874
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	371, 413
Bse3DI	GCAATG	2 cut(s)	575, 612
BseDI	CCNNGG	2 cut(s)	123, 600
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	4 cut(s)	366, 367, 379, 874
BseMI	GCAATG	2 cut(s)	575, 612
BseMII	CTCAG	3 cut(s)	400, 704, 710
BseNI	ACTGG	2 cut(s)	371, 413
BseRI	GAGGAG	2 cut(s)	299, 320
BseSI	GKGCMC	1 cut(s)	373
BseX3I	CGGCCG	1 cut(s)	540
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	467
Bsh1236I	CGCG	2 cut(s)	298, 300
Bsh1285I	CGRYCG	1 cut(s)	543
BshFI	GGCC	7 cut(s)	17, 371, 542, 599, 785, 801, 878
BsiEI	CGRYCG	1 cut(s)	543
BsiHKAI	GWGCWC	2 cut(s)	447, 691
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	4 cut(s)	366, 367, 379, 874
BsmAI	GTCTC	1 cut(s)	453
BsmBI	CGTCTC	1 cut(s)	453
BsnI	GGCC	7 cut(s)	17, 371, 542, 599, 785, 801, 878
Bsp119I	TTCGAA	2 cut(s)	554, 644
Bsp120I	GGGCCC	1 cut(s)	369
Bsp1286I	GDGCHC	3 cut(s)	373, 447, 691
Bsp143I	GATC	2 cut(s)	382, 722
Bsp19I	CCATGG	2 cut(s)	123, 600
BspACI	CCGC	6 cut(s)	313, 316, 465, 531, 539, 705
BspANI	GGCC	7 cut(s)	17, 371, 542, 599, 785, 801, 878
BspCNI	CTCAG	3 cut(s)	399, 703, 711
BspFNI	CGCG	2 cut(s)	298, 300
BspLI	GGNNCC	2 cut(s)	139, 371
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	1 cut(s)	390
BspQI	GCTCTTC	1 cut(s)	435
BspT104I	TTCGAA	2 cut(s)	554, 644
BsrDI	GCAATG	2 cut(s)	575, 612
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	371, 413
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	123, 600
BssMI	GATC	2 cut(s)	382, 722
BssNI	GRCGYC	2 cut(s)	423, 462
BssT1I	CCWWGG	2 cut(s)	123, 600
Bst4CI	ACNGT	1 cut(s)	730
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	2 cut(s)	423, 462
BstBI	TTCGAA	2 cut(s)	554, 644
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	3 cut(s)	386, 690, 719
BstDSI	CCRYGG	2 cut(s)	123, 600
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	2 cut(s)	298, 300
BstHHI	GCGC	2 cut(s)	300, 575
BstKTI	GATC	2 cut(s)	385, 725
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	2 cut(s)	382, 722
BstMCI	CGRYCG	1 cut(s)	543
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 304, 473, 661, 899
BstSFI	CTRYAG	1 cut(s)	667
BstSLI	GKGCMC	1 cut(s)	373
BstUI	CGCG	2 cut(s)	298, 300
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	2 cut(s)	382, 722
BstYI	RGATCY	2 cut(s)	382, 722
BstZI	CGGCCG	1 cut(s)	540
BsuRI	GGCC	7 cut(s)	17, 371, 542, 599, 785, 801, 878
BtgI	CCRYGG	2 cut(s)	123, 600
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	483
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	1 cut(s)	799
CfoI	GCGC	2 cut(s)	300, 575
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	4 cut(s)	15, 369, 370, 533
CseI	GACGC	2 cut(s)	412, 470
Csp6I	GTAC	4 cut(s)	397, 406, 418, 863
CviAII	CATG	5 cut(s)	124, 149, 376, 601, 842
CviQI	GTAC	4 cut(s)	397, 406, 418, 863
DdeI	CTNAG	3 cut(s)	386, 690, 719
DpnI	GATC	2 cut(s)	384, 724
DpnII	GATC	2 cut(s)	382, 722
DraI	TTTAAA	1 cut(s)	580
EaeI	YGGCCR	1 cut(s)	540
EagI	CGGCCG	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EciI	GGCGGA	1 cut(s)	302
EclXI	CGGCCG	1 cut(s)	540
Eco130I	CCWWGG	2 cut(s)	123, 600
Eco147I	AGGCCT	2 cut(s)	785, 801
Eco24I	GRGCYC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	533
Eco52I	CGGCCG	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	498
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	123, 600
EcoT38I	GRGCYC	1 cut(s)	373
ErhI	CCWWGG	2 cut(s)	123, 600
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	5 cut(s)	127, 152, 379, 604, 845
FatI	CATG	5 cut(s)	123, 148, 375, 600, 841
FauI	CCCGC	1 cut(s)	698
Fnu4HI	GCNGC	4 cut(s)	129, 316, 465, 540
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	4 cut(s)	129, 316, 465, 540
GlaI	GCGC	2 cut(s)	299, 574
GluI	GCNGC	4 cut(s)	129, 316, 465, 540
GsaI	CCCAGC	1 cut(s)	471
HaeIII	GGCC	7 cut(s)	17, 371, 542, 599, 785, 801, 878
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	2 cut(s)	412, 470
HhaI	GCGC	2 cut(s)	300, 575
Hin1I	GRCGYC	2 cut(s)	423, 462
Hin1II	CATG	5 cut(s)	127, 152, 379, 604, 845
Hin6I	GCGC	2 cut(s)	298, 573
HinP1I	GCGC	2 cut(s)	298, 573
HinfI	GANTC	4 cut(s)	73, 145, 551, 641
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	2 cut(s)	37, 614
Hpy166II	GTNNAC	1 cut(s)	863
Hpy188I	TCNGA	3 cut(s)	72, 640, 768
Hpy188III	TCNNGA	2 cut(s)	388, 778
Hpy8I	GTNNAC	1 cut(s)	863
HpyAV	CCTTC	7 cut(s)	121, 234, 473, 589, 744, 775, 787
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4V	TGCA	3 cut(s)	568, 588, 920
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 304, 473, 661, 899
HpyF3I	CTNAG	3 cut(s)	386, 690, 719
Hsp92I	GRCGYC	2 cut(s)	423, 462
Hsp92II	CATG	5 cut(s)	127, 152, 379, 604, 845
HspAI	GCGC	2 cut(s)	298, 573
Kzo9I	GATC	2 cut(s)	382, 722
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	4 cut(s)	124, 312, 450, 835
Lsp1109I	GCAGC	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	43, 620
MalI	GATC	2 cut(s)	384, 724
MboI	GATC	2 cut(s)	382, 722
MboII	GAAGA	6 cut(s)	275, 452, 781, 802, 897, 941
MfeI	CAATTG	1 cut(s)	62
MflI	RGATCY	2 cut(s)	382, 722
MhlI	GDGCHC	3 cut(s)	373, 447, 691
MluCI	AATT	3 cut(s)	62, 514, 870
MlyI	GAGTC	2 cut(s)	67, 139
MmeI	TCCRAC	2 cut(s)	95, 857
MseI	TTAA	5 cut(s)	579, 681, 804, 873, 924
MslI	CAYNNNNRTG	1 cut(s)	605
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	62
MvnI	CGCG	2 cut(s)	298, 300
MwoI	GCNNNNNNNGC	5 cut(s)	125, 304, 473, 661, 899
NcoI	CCATGG	2 cut(s)	123, 600
NdeII	GATC	2 cut(s)	382, 722
NlaIII	CATG	5 cut(s)	127, 152, 379, 604, 845
NlaIV	GGNNCC	2 cut(s)	139, 371
NmuCI	GTSAC	2 cut(s)	43, 620
NspV	TTCGAA	2 cut(s)	554, 644
PceI	AGGCCT	2 cut(s)	785, 801
PciSI	GCTCTTC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	551, 641
PkrI	GCNGC	4 cut(s)	130, 317, 466, 541
PleI	GAGTC	2 cut(s)	67, 139
PpsI	GAGTC	2 cut(s)	67, 139
PspFI	CCCAGC	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	139, 371
PspOMI	GGGCCC	1 cut(s)	369
PspPI	GGNCC	4 cut(s)	15, 369, 370, 533
PsuI	RGATCY	2 cut(s)	382, 722
RsaI	GTAC	4 cut(s)	398, 407, 419, 864
RsaNI	GTAC	4 cut(s)	397, 406, 418, 863
RseI	CAYNNNNRTG	1 cut(s)	605
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	5 cut(s)	579, 681, 804, 873, 924
SatI	GCNGC	4 cut(s)	129, 316, 465, 540
Sau3AI	GATC	2 cut(s)	382, 722
Sau96I	GGNCC	4 cut(s)	15, 369, 370, 533
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	2 cut(s)	67, 139
SduI	GDGCHC	3 cut(s)	373, 447, 691
SetI	ASST	9 cut(s)	172, 233, 309, 330, 617, 627, 657, 704, 815
SfcI	CTRYAG	1 cut(s)	667
SfuI	TTCGAA	2 cut(s)	554, 644
SinI	GGWCC	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	62, 514, 870
SseBI	AGGCCT	2 cut(s)	785, 801
SsiI	CCGC	6 cut(s)	313, 316, 465, 531, 539, 705
StuI	AGGCCT	2 cut(s)	785, 801
StyI	CCWWGG	2 cut(s)	123, 600
TaaI	ACNGT	1 cut(s)	730
TaqI	TCGA	3 cut(s)	549, 554, 644
TasI	AATT	3 cut(s)	62, 514, 870
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	3 cut(s)	318, 467, 542
TfiI	GAWTC	2 cut(s)	551, 641
Tru1I	TTAA	5 cut(s)	579, 681, 804, 873, 924
Tru9I	TTAA	5 cut(s)	579, 681, 804, 873, 924
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	2 cut(s)	43, 620
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	2 cut(s)	43, 620
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	533
XagI	CCTNNNNNAGG	1 cut(s)	377
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.