Rorug04G0083000

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001489
Physical Location & Seq
Forward (+)
12624729 .. 12625444
716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0083000.1

Sequence Viewer

Length: 639 bp
ATGGATGTGAAAGTTACTGAGGAACTTAAGAAAAGACTCCAAAAGTTGGTCCTTGTTGGTCCATTACATCTCGTCCGGCCAGTACAATCAATTGTATCAAATGATGATGAGGAGGAGGAGGAGGAGGAGAAGGATGGTTGTTTACAGTGGTTGGACAAGCACGAGCCTGCTTTGGTAGCATACATCAGCCTTGGAACTCTGGTGGCACTGCCTCCCATGGAGGTAGCAGCATTAGCTGAGGTATTAGAGGAAGGCGGATTCCCCTTTCTTTGGTCATTTAGGGGAAATCAAGAGGACTTCCCACAAGGATTTATCGAAAGAACCAACGGGTTATCCATAGGAAAAGTAGTTCCATGGGTGAACCAAGAGCAAATCCTCATACCTCGGCCTTACTTTGTTGATCAAAATTTAAATATGCGGAGTGTAGAAGTTGTATGGAAGATCGTTGTGAGGATTGAGGGAGGCGTTTTCACAAAAACTAGAGCAATCAAGGCCTTGGAACAAGTTTTATCGCTTGAACAAGGAAAAGAAATGAGACAGAGAAGTGGAATCCTTAAACAGCTTGCTCAAGAGGCTATTGGACCGAATGGGCATTCAGCTCAAGACTTGAAAGCTTTGGTAGAGATCATCAAGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

212

Amino Acids

23.86

Weight (kDa)

5.07

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 46
AciI CCGC 2 cut(s) 255, 418
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 1 cut(s) 406
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 46, 270
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 518, 610
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 4 cut(s) 236, 562, 599, 614
AluI AGCT 4 cut(s) 236, 562, 599, 614
Alw26I GTCTC 1 cut(s) 529
AoxI GGCC 3 cut(s) 77, 386, 492
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 406
AspS9I GGNCC 3 cut(s) 49, 59, 581
AsuHPI GGTGA 1 cut(s) 370
AvaII GGWCC 3 cut(s) 49, 59, 581
BauI CACGAG 1 cut(s) 161
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 128
BclI TGATCA 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 529
BfaI CTAG 1 cut(s) 480
BfrI CTTAAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme18I GGWCC 3 cut(s) 49, 59, 581
BmgT120I GGNCC 3 cut(s) 49, 59, 581
Bpu10I CCTNAGC 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 552, 585
BsaJI CCNNGG 5 cut(s) 190, 216, 353, 383, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 270
Bse1I ACTGG 1 cut(s) 80
BseDI CCNNGG 5 cut(s) 190, 216, 353, 383, 495
BseGI GGATG 2 cut(s) 10, 139
BseLI CCNNNNNNNGG 2 cut(s) 46, 270
BseMII CTCAG 2 cut(s) 9, 228
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 6 cut(s) 125, 128, 131, 134, 137, 140
BseXI GCAGC 1 cut(s) 239
BshFI GGCC 3 cut(s) 79, 388, 494
BsiSI CCGG 1 cut(s) 76
BslI CCNNNNNNNGG 2 cut(s) 46, 270
BsmAI GTCTC 1 cut(s) 529
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 3 cut(s) 79, 388, 494
Bsp143I GATC 3 cut(s) 400, 441, 624
Bsp19I CCATGG 2 cut(s) 216, 353
BspACI CCGC 2 cut(s) 255, 418
BspANI GGCC 3 cut(s) 79, 388, 494
BspCNI CTCAG 2 cut(s) 10, 229
BspTI CTTAAG 1 cut(s) 26
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 5 cut(s) 190, 216, 353, 383, 495
BssMI GATC 3 cut(s) 400, 441, 624
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 4 cut(s) 190, 216, 353, 495
Bst2BI CACGAG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 147
BstAFI CTTAAG 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 168, 564
BstDEI CTNAG 2 cut(s) 18, 237
BstDSI CCRYGG 2 cut(s) 216, 353
BstF5I GGATG 2 cut(s) 10, 139
BstKTI GATC 3 cut(s) 403, 444, 627
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 3 cut(s) 400, 441, 624
BstMWI GCNNNNNNNGC 4 cut(s) 176, 233, 491, 572
BstV1I GCAGC 1 cut(s) 239
BsuRI GGCC 3 cut(s) 79, 388, 494
BtgI CCRYGG 2 cut(s) 216, 353
BtsCI GGATG 2 cut(s) 10, 139
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 152, 206
Cac8I GCNNGC 2 cut(s) 168, 564
Cfr13I GGNCC 3 cut(s) 49, 59, 581
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 217, 354
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 18, 237
DpnI GATC 3 cut(s) 402, 443, 626
DpnII GATC 3 cut(s) 400, 441, 624
DraI TTTAAA 1 cut(s) 411
EaeI YGGCCR 1 cut(s) 77
EciI GGCGGA 1 cut(s) 270
Eco130I CCWWGG 4 cut(s) 190, 216, 353, 495
Eco147I AGGCCT 1 cut(s) 494
Eco47I GGWCC 3 cut(s) 49, 59, 581
EcoT14I CCWWGG 4 cut(s) 190, 216, 353, 495
ErhI CCWWGG 4 cut(s) 190, 216, 353, 495
FaeI CATG 2 cut(s) 220, 357
FaiI YATR 7 cut(s) 181, 218, 338, 355, 380, 416, 436
FatI CATG 2 cut(s) 216, 353
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 2 cut(s) 17, 146
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 1 cut(s) 480
GluI GCNGC 1 cut(s) 228
HaeIII GGCC 3 cut(s) 79, 388, 494
HapII CCGG 1 cut(s) 76
Hin1II CATG 2 cut(s) 220, 357
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 3 cut(s) 36, 258, 549
HpaII CCGG 1 cut(s) 76
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 143, 361
Hpy188III TCNNGA 4 cut(s) 290, 569, 602, 636
Hpy8I GTNNAC 2 cut(s) 143, 361
HpyAV CCTTC 2 cut(s) 124, 245
HpyCH4III ACNGT 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 233, 491, 572
HpyF3I CTNAG 2 cut(s) 18, 237
Hsp92II CATG 2 cut(s) 220, 357
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 3 cut(s) 400, 441, 624
LpnPI CCDG 4 cut(s) 89, 93, 180, 185
Lsp1109I GCAGC 1 cut(s) 239
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 13
MalI GATC 3 cut(s) 402, 443, 626
MboI GATC 3 cut(s) 400, 441, 624
MboII GAAGA 1 cut(s) 451
MfeI CAATTG 1 cut(s) 90
MluCI AATT 2 cut(s) 90, 406
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 132
MseI TTAA 3 cut(s) 27, 410, 555
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 1 cut(s) 76
MunI CAATTG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 592
MwoI GCNNNNNNNGC 4 cut(s) 176, 233, 491, 572
NcoI CCATGG 2 cut(s) 216, 353
NdeII GATC 3 cut(s) 400, 441, 624
NlaIII CATG 2 cut(s) 220, 357
NmeAIII GCCGAG 1 cut(s) 364
PceI AGGCCT 1 cut(s) 494
PctI GAATGC 1 cut(s) 592
PfeI GAWTC 2 cut(s) 258, 549
PflMI CCANNNNNTGG 1 cut(s) 46
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspPI GGNCC 3 cut(s) 49, 59, 581
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 3 cut(s) 27, 410, 555
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 3 cut(s) 400, 441, 624
Sau96I GGNCC 3 cut(s) 49, 59, 581
SchI GAGTC 1 cut(s) 30
SetI ASST 7 cut(s) 225, 238, 243, 385, 564, 601, 616
SinI GGWCC 3 cut(s) 49, 59, 581
SmiI ATTTAAAT 1 cut(s) 411
SmlI CTYRAG 3 cut(s) 26, 567, 600
SmoI CTYRAG 3 cut(s) 26, 567, 600
Sse9I AATT 2 cut(s) 90, 406
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 2 cut(s) 255, 418
SspMI CTAG 1 cut(s) 480
StuI AGGCCT 1 cut(s) 494
StyI CCWWGG 4 cut(s) 190, 216, 353, 495
SwaI ATTTAAAT 1 cut(s) 411
TaaI ACNGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 315
TaqII GACCGA 1 cut(s) 598
TasI AATT 2 cut(s) 90, 406
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 2 cut(s) 258, 549
Tru1I TTAA 3 cut(s) 27, 410, 555
Tru9I TTAA 3 cut(s) 27, 410, 555
TscAI CASTG 2 cut(s) 152, 213
TseI GCWGC 1 cut(s) 227
TspRI CASTG 2 cut(s) 152, 213
Van91I CCANNNNNTGG 1 cut(s) 46
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 3 cut(s) 49, 59, 581
XapI RAATTY 1 cut(s) 406
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.