RLG00000008679

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001489
Physical Location & Seq
Reverse (-)
34820979 .. 34825596
4618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008679

Sequence Viewer

Length: 852 bp
ATGGTTGGTCGGCCATCCAATTTCACTAGCAGCAAGGGCGATTTGAGGCACCAGATTTCAGGAATGGTGGTGGCAGCTTCACGAGGCAGTGTCTATTCCCTGAGGGCGGCTTTGGCGCTTGTAAAACCCAACTCCGCCTCCGAAGAACCAAATCGTCATCGCGGACCCCAAATCCCAAACCCCGCCATCACTCCTTCCCGTGAAGACGTGGTCCTCTCACGCGCCTCCCACCTCACGCGCCAAGAGCTCCTCCGCCGCCGCTCCCACAACCTCAAGGAGCTGACGAAATGCTACAAAGACCACTACTGGGGGTTCATGGAGCACCTCAAGATCCAGTACAGGGAGTACTACTGGAAGTACGGTGTCAGCCCTTTCAAAGAAGACAACAACGCCACCGCCACCACCAATAACAACAACAATGGAGTCGCTGCTGTTGAAGGCAGTGATGACAACCACAATAACAATCGCCGCTGCGCTTCCGTCGGCTGTAAGTTGAAGGCCATGGCCTTAACCAGCTTCTGCCACCTCCACATTCTTTCGGATTCGAAGCAGAGGCTCTACAAGGCTTGCAATTATGTTATCAAGAGTGCTCAAGCAGGACCTATAACATGTGGGAAGCCAATACTGAGATCCACTACCCCTTCTCTTTGTACTGTCCACTTCCAAAAGGCTCAGAAGCATGTAACCAGGGCCTTGCGGAAGGCAGGGCTTAATGTTTCCTCATCAAGTAAGCTTGCTCCCAAGTTCCATGTGATAGTTGCAGAATATGTACGCCAAATCCAATCCACACGAAAAGCCGCACGAAAGGGAAATAAGAGTAAAGTTGCAATAAAGGAAGAAACTGCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

284

Amino Acids

31.57

Weight (kDa)

10.07

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 158 - 221 7.1e-17 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AccBSI CCGCTC 1 cut(s) 261
AccII CGCG 3 cut(s) 162, 222, 238
AclWI GGATC 2 cut(s) 325, 624
AcoI YGGCCR 1 cut(s) 11
AfaI GTAC 5 cut(s) 338, 347, 359, 652, 771
AfiI CCNNNNNNNGG 3 cut(s) 106, 307, 340
AflIII ACRYGT 1 cut(s) 608
AgsI TTSAA 3 cut(s) 376, 437, 496
AjiI CACGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 686
AluBI AGCT 5 cut(s) 77, 247, 280, 516, 733
AluI AGCT 5 cut(s) 77, 247, 280, 516, 733
Alw21I GWGCWC 3 cut(s) 249, 324, 592
AlwI GGATC 2 cut(s) 325, 624
AlwNI CAGNNNCTG 1 cut(s) 519
AoxI GGCC 4 cut(s) 11, 498, 504, 690
ApeKI GCWGC 4 cut(s) 30, 74, 428, 471
AspLEI GCGC 4 cut(s) 118, 224, 240, 476
AspS9I GGNCC 4 cut(s) 164, 211, 599, 690
AsuII TTCGAA 1 cut(s) 545
AvaII GGWCC 3 cut(s) 164, 211, 599
AxyI CCTNAGG 1 cut(s) 101
BanI GGYRCC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 249
BauI CACGAG 1 cut(s) 81
BbsI GAAGAC 2 cut(s) 210, 387
Bbv12I GWGCWC 3 cut(s) 249, 324, 592
BbvI GCAGC 4 cut(s) 42, 86, 415, 458
BccI CCATC 2 cut(s) 22, 194
BciT130I CCWGG 1 cut(s) 688
BfaI CTAG 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 119
BisI GCNGC 9 cut(s) 31, 75, 108, 256, 259, 429, 469, 472, 798
BlsI GCNGC 9 cut(s) 32, 76, 109, 257, 260, 430, 470, 473, 799
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 688
Bme18I GGWCC 3 cut(s) 164, 211, 599
BmgBI CACGTC 1 cut(s) 208
BmgT120I GGNCC 4 cut(s) 164, 211, 599, 690
BmiI GGNNCC 2 cut(s) 50, 166
BmrFI CCNGG 1 cut(s) 688
BmrI ACTGGG 1 cut(s) 316
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 2 cut(s) 210, 387
Bpu14I TTCGAA 1 cut(s) 545
BpuEI CTTGAG 3 cut(s) 257, 311, 576
BsaJI CCNNGG 2 cut(s) 501, 687
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 307, 340
Bse1I ACTGG 3 cut(s) 311, 334, 356
Bse21I CCTNAGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 688
BseDI CCNNGG 2 cut(s) 501, 687
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 3 cut(s) 106, 307, 340
BseMII CTCAG 3 cut(s) 92, 617, 686
BseNI ACTGG 3 cut(s) 311, 334, 356
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 4 cut(s) 42, 86, 415, 458
Bsh1236I CGCG 3 cut(s) 162, 222, 238
BshFI GGCC 4 cut(s) 13, 500, 506, 692
BshNI GGYRCC 1 cut(s) 48
BsiHKAI GWGCWC 3 cut(s) 249, 324, 592
BslI CCNNNNNNNGG 3 cut(s) 106, 307, 340
BsnI GGCC 4 cut(s) 13, 500, 506, 692
Bsp119I TTCGAA 1 cut(s) 545
Bsp1286I GDGCHC 3 cut(s) 249, 324, 592
Bsp143I GATC 2 cut(s) 330, 629
Bsp19I CCATGG 1 cut(s) 501
BspANI GGCC 4 cut(s) 13, 500, 506, 692
BspCNI CTCAG 3 cut(s) 93, 618, 685
BspFNI CGCG 3 cut(s) 162, 222, 238
BspLI GGNNCC 2 cut(s) 50, 166
BspPI GGATC 2 cut(s) 325, 624
BspT104I TTCGAA 1 cut(s) 545
BspT107I GGYRCC 1 cut(s) 48
BsrBI CCGCTC 1 cut(s) 261
BsrI ACTGG 3 cut(s) 311, 334, 356
BssECI CCNNGG 2 cut(s) 501, 687
BssMI GATC 2 cut(s) 330, 629
BssSI CACGAG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 501
Bst2BI CACGAG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 688
Bst4CI ACNGT 2 cut(s) 362, 655
BstBI TTCGAA 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 568, 735
BstDEI CTNAG 3 cut(s) 101, 626, 672
BstDSI CCRYGG 1 cut(s) 501
BstF5I GGATG 1 cut(s) 14
BstFNI CGCG 3 cut(s) 162, 222, 238
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 4 cut(s) 118, 224, 240, 476
BstKTI GATC 2 cut(s) 333, 632
BstMBI GATC 2 cut(s) 330, 629
BstMWI GCNNNNNNNGC 3 cut(s) 36, 113, 244
BstNI CCWGG 1 cut(s) 688
BstNSI RCATGY 2 cut(s) 612, 683
BstSCI CCNGG 1 cut(s) 686
BstUI CGCG 3 cut(s) 162, 222, 238
BstV1I GCAGC 4 cut(s) 42, 86, 415, 458
BstV2I GAAGAC 2 cut(s) 210, 387
BstX2I RGATCY 2 cut(s) 330, 629
BstYI RGATCY 2 cut(s) 330, 629
Bsu36I CCTNAGG 1 cut(s) 101
BsuRI GGCC 4 cut(s) 13, 500, 506, 692
BtgI CCRYGG 1 cut(s) 501
BtgZI GCGATG 1 cut(s) 143
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 14
BtsI GCAGTG 2 cut(s) 94, 448
BtsIMutI CAGTG 2 cut(s) 94, 448
Cac8I GCNNGC 2 cut(s) 568, 735
CaiI CAGNNNCTG 1 cut(s) 519
CfoI GCGC 4 cut(s) 118, 224, 240, 476
Cfr13I GGNCC 4 cut(s) 164, 211, 599, 690
Csp6I GTAC 5 cut(s) 337, 346, 358, 651, 770
CviAII CATG 5 cut(s) 316, 502, 609, 680, 749
CviQI GTAC 5 cut(s) 337, 346, 358, 651, 770
DdeI CTNAG 3 cut(s) 101, 626, 672
DpnI GATC 2 cut(s) 332, 631
DpnII GATC 2 cut(s) 330, 629
EaeI YGGCCR 1 cut(s) 11
EciI GGCGGA 2 cut(s) 124, 242
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 3 cut(s) 164, 211, 599
Eco53kI GAGCTC 1 cut(s) 247
Eco81I CCTNAGG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 2 cut(s) 599, 690
EcoRII CCWGG 1 cut(s) 686
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 5 cut(s) 319, 505, 612, 683, 752
FaiI YATR 8 cut(s) 317, 503, 576, 605, 610, 681, 750, 768
FatI CATG 5 cut(s) 315, 501, 608, 679, 748
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 9 cut(s) 31, 75, 108, 256, 259, 429, 469, 472, 798
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 9 cut(s) 31, 75, 108, 256, 259, 429, 469, 472, 798
FspBI CTAG 1 cut(s) 27
GlaI GCGC 4 cut(s) 117, 223, 239, 475
GluI GCNGC 9 cut(s) 31, 75, 108, 256, 259, 429, 469, 472, 798
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 4 cut(s) 13, 500, 506, 692
HhaI GCGC 4 cut(s) 118, 224, 240, 476
Hin1II CATG 5 cut(s) 319, 505, 612, 683, 752
Hin6I GCGC 4 cut(s) 116, 222, 238, 474
HinP1I GCGC 4 cut(s) 116, 222, 238, 474
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 2 cut(s) 423, 542
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 3 cut(s) 142, 541, 675
Hpy188III TCNNGA 4 cut(s) 60, 81, 328, 583
Hpy8I GTNNAC 1 cut(s) 658
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 5 cut(s) 204, 431, 490, 651, 694
HpyCH4III ACNGT 2 cut(s) 362, 655
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 570, 761, 827
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 113, 244
HpyF3I CTNAG 3 cut(s) 101, 626, 672
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 5 cut(s) 319, 505, 612, 683, 752
HspAI GCGC 4 cut(s) 116, 222, 238, 474
Kzo9I GATC 2 cut(s) 330, 629
LmnI GCTCC 5 cut(s) 252, 266, 277, 319, 742
Lsp1109I GCAGC 4 cut(s) 42, 86, 415, 458
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 682
MalI GATC 2 cut(s) 332, 631
MbiI CCGCTC 1 cut(s) 261
MboI GATC 2 cut(s) 330, 629
MboII GAAGA 4 cut(s) 155, 215, 392, 848
MflI RGATCY 2 cut(s) 330, 629
MhlI GDGCHC 3 cut(s) 249, 324, 592
MluCI AATT 2 cut(s) 19, 571
MlyI GAGTC 1 cut(s) 432
MseI TTAA 2 cut(s) 509, 711
MspA1I CMGCKG 1 cut(s) 471
MspR9I CCNGG 1 cut(s) 688
MvaI CCWGG 1 cut(s) 688
MvnI CGCG 3 cut(s) 162, 222, 238
MwoI GCNNNNNNNGC 3 cut(s) 36, 113, 244
NcoI CCATGG 1 cut(s) 501
NdeII GATC 2 cut(s) 330, 629
NlaIII CATG 5 cut(s) 319, 505, 612, 683, 752
NlaIV GGNNCC 2 cut(s) 50, 166
NspI RCATGY 2 cut(s) 612, 683
NspV TTCGAA 1 cut(s) 545
PciI ACATGT 1 cut(s) 608
PfeI GAWTC 1 cut(s) 542
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 9 cut(s) 32, 76, 109, 257, 260, 430, 470, 473, 799
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 599
PscI ACATGT 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 1 cut(s) 686
PspGI CCWGG 1 cut(s) 686
PspN4I GGNNCC 2 cut(s) 50, 166
PspPI GGNCC 4 cut(s) 164, 211, 599, 690
PspPPI RGGWCCY 1 cut(s) 599
PstNI CAGNNNCTG 1 cut(s) 519
PsuI RGATCY 2 cut(s) 330, 629
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 5 cut(s) 338, 347, 359, 652, 771
RsaNI GTAC 5 cut(s) 337, 346, 358, 651, 770
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 509, 711
SatI GCNGC 9 cut(s) 31, 75, 108, 256, 259, 429, 469, 472, 798
Sau3AI GATC 2 cut(s) 330, 629
Sau96I GGNCC 4 cut(s) 164, 211, 599, 690
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 1 cut(s) 688
SduI GDGCHC 3 cut(s) 249, 324, 592
SfuI TTCGAA 1 cut(s) 545
SinI GGWCC 3 cut(s) 164, 211, 599
SmlI CTYRAG 3 cut(s) 272, 326, 591
SmoI CTYRAG 3 cut(s) 272, 326, 591
Sse9I AATT 2 cut(s) 19, 571
SspMI CTAG 1 cut(s) 27
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 686
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 2 cut(s) 362, 655
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 545
TasI AATT 2 cut(s) 19, 571
TatI WGTACW 3 cut(s) 336, 345, 650
TauI GCSGC 5 cut(s) 110, 258, 261, 471, 800
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 2 cut(s) 509, 711
Tru9I TTAA 2 cut(s) 509, 711
TscAI CASTG 2 cut(s) 94, 448
TseI GCWGC 4 cut(s) 30, 74, 428, 471
TspDTI ATGAA 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 469
TspRI CASTG 2 cut(s) 94, 448
Tth111I GACNNNGTC 1 cut(s) 209
VpaK11BI GGWCC 3 cut(s) 164, 211, 599
XceI RCATGY 2 cut(s) 612, 683
XspI CTAG 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.