Rorug04G0083100

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001489
Physical Location & Seq
Reverse (-)
12643014 .. 12643541
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0083100.1

Sequence Viewer

Length: 528 bp
ATGTTACTGTGGCTGGACAACCGCAAGCCTCCATCAGTAGCATACATCAGCTTTGGGAGAGGCTTTAGAGGAAGGGGGTTCCCATTTCTTTGGTCATTTAGGGGAAACCTTGAGAACTTTCCCAAAGGATTTATCGAAAGAACATTTACTGGAAAAGTTGTTCCCTGGGTGAAGCAAGTGCAGATCCTAAATCATCCGTCGGTAGGGGTGTTTGTTACATATGGCGGCTGGAAATCAGTTTTGGAGAGTGTAACTTGTGGTGTGCCTATGATTGGGAGGCCTCATTTTGCTGATCAACCACTTGATATGCGGAGCGTAGAAGTTGTATGGAAGATCGGTATGAGAGAGGGTGGCGTTTTTACTAAATCTGGAGCAATCAAGGTACTGGAACAAGCTCTATCGCTTGAGCACGGAAAAGGAATGAGACACAGAGTTGGAGTCCTTAAACAACTTGCCCAAGAGGCTGTTGGATCCAATGGGAGTTCAGCTCAAGACTTGAAAGCTCTGGTAGAGATCATCAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

175

Amino Acids

19.41

Weight (kDa)

10.12

Isoelectric Point (pI)

24.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 27 - 132 1.7e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 22, 225, 310
AclWI GGATC 3 cut(s) 178, 465, 478
AfaI GTAC 1 cut(s) 384
AfiI CCNNNNNNNGG 2 cut(s) 203, 272
AgsI TTSAA 1 cut(s) 499
AjnI CCWGG 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 4 cut(s) 51, 395, 488, 503
AluI AGCT 4 cut(s) 51, 395, 488, 503
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 1 cut(s) 418
AlwI GGATC 3 cut(s) 178, 465, 478
AoxI GGCC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 181
BamHI GGATCC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 411
BccI CCATC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 166
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 418
BglI GCCNNNNNGGC 1 cut(s) 461
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 80, 472
BmrFI CCNGG 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 472, 504
BpmI CTGGAG 1 cut(s) 390
BpuEI CTTGAG 3 cut(s) 131, 425, 474
BsaJI CCNNGG 2 cut(s) 164, 165
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 272
Bse1I ACTGG 2 cut(s) 154, 390
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 164, 165
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 203, 272
BseNI ACTGG 2 cut(s) 154, 390
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 203, 272
BsmAI GTCTC 1 cut(s) 418
BsnI GGCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 5 cut(s) 183, 292, 333, 470, 513
BspACI CCGC 3 cut(s) 22, 225, 310
BspANI GGCC 1 cut(s) 280
BspHI TCATGA 1 cut(s) 524
BspLI GGNNCC 2 cut(s) 80, 472
BspPI GGATC 3 cut(s) 178, 465, 478
BsrI ACTGG 2 cut(s) 154, 390
BssECI CCNNGG 2 cut(s) 164, 165
BssMI GATC 5 cut(s) 183, 292, 333, 470, 513
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 26
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 5 cut(s) 186, 295, 336, 473, 516
BstMAI GTCTC 1 cut(s) 418
BstMBI GATC 5 cut(s) 183, 292, 333, 470, 513
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstX2I RGATCY 2 cut(s) 183, 470
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 2 cut(s) 183, 470
BsuRI GGCC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 524
Csp6I GTAC 1 cut(s) 383
CviAII CATG 1 cut(s) 525
CviQI GTAC 1 cut(s) 383
DpnI GATC 5 cut(s) 185, 294, 335, 472, 515
DpnII GATC 5 cut(s) 183, 292, 333, 470, 513
Eco147I AGGCCT 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 164
FaeI CATG 1 cut(s) 528
FaiI YATR 8 cut(s) 43, 220, 222, 269, 308, 328, 341, 526
FatI CATG 1 cut(s) 524
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 1 cut(s) 280
Hin1II CATG 1 cut(s) 528
HinfI GANTC 1 cut(s) 438
HphI GGTGA 1 cut(s) 181
Hpy188III TCNNGA 3 cut(s) 369, 491, 525
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
Hsp92II CATG 1 cut(s) 528
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 5 cut(s) 183, 292, 333, 470, 513
LmnI GCTCC 2 cut(s) 312, 371
LpnPI CCDG 7 cut(s) 135, 151, 178, 214, 354, 371, 491
MaeIII GTNAC 3 cut(s) 3, 214, 250
MalI GATC 5 cut(s) 185, 294, 335, 472, 515
MboI GATC 5 cut(s) 183, 292, 333, 470, 513
MboII GAAGA 1 cut(s) 343
MflI RGATCY 2 cut(s) 183, 470
MhlI GDGCHC 1 cut(s) 411
MlyI GAGTC 1 cut(s) 447
MmeI TCCRAC 2 cut(s) 415, 448
MnlI CCTC 7 cut(s) 39, 53, 62, 270, 291, 340, 454
MseI TTAA 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 461
NdeI CATATG 1 cut(s) 220
NdeII GATC 5 cut(s) 183, 292, 333, 470, 513
NlaIII CATG 1 cut(s) 528
NlaIV GGNNCC 2 cut(s) 80, 472
PagI TCATGA 1 cut(s) 524
PasI CCCWGGG 1 cut(s) 165
PceI AGGCCT 1 cut(s) 280
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 80, 472
PsuI RGATCY 2 cut(s) 183, 470
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 5 cut(s) 183, 292, 333, 470, 513
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 411
SetI ASST 6 cut(s) 53, 111, 384, 397, 490, 505
SmlI CTYRAG 3 cut(s) 110, 404, 489
SmoI CTYRAG 3 cut(s) 110, 404, 489
SseBI AGGCCT 1 cut(s) 280
SsiI CCGC 3 cut(s) 22, 225, 310
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 135
TauI GCSGC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TspGWI ACGGA 2 cut(s) 186, 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.