FvH4_4g11360

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001489
Physical Location & Seq
Reverse (-)
15111516 .. 15114958
3443 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11360.t1

Sequence Viewer

Length: 693 bp
ATGGCTGCCAAGAACAACACCCTTCCTCCTCCGTCTTCCTCCAAGAACGACGACCCATCCACCTCGGCCATCACTCCTTCCCAGGAAGACGCGTACCTCTCACGCGCCTCCCACCTCACTCGCCAAGAGCTCCTCCGCCGCCGGTCGCACCGCCTCAAGGAGCTGACGAAATGCTACAAAGACCACTACTGGGGGTTCATGGAGCACCTCAAGATCCAGTACAGGGAGTACTACTGGAAGTACGGTGTCAGCCCTTTCAAACAAGACAATGAAGTTGCTGCTGTTGAAGGTGGCGATGATAATAATCGGCGGTGCGCTTCGGTTGGCTGTAAGCTCAAGGCCATGGCCTTAACCAGCTTCTGCCACCTCCACATTCTCTCCGATTCCAAGCAGAGGCTCTACAAGGCTTGCACTTATGTTATCAAGAGTGCACAGGCAGGACCTATAACATGCGGGAAGCCAATACTGAGATCCACTACTCCTTCTCTTTGTACTGTCCACTTCCAGAAGGCTCAGAAGCATGTAACCAGAGCCTTGAGGAAGGCAGGGCTTAATGTTACCTCATCTAGTAAGCTTGCTCCCAAGTTCCATGTGATAGTGGCAGAATATGTACGCCAAATTCAATCCAAACGAAGAGCCGCACTAAAGGATAATAAACATAAAGTAGCAATAAAGGAAGAAACCGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

231

Amino Acids

26.05

Weight (kDa)

9.79

Isoelectric Point (pI)

58.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 105 - 168 4.2e-17 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 92, 105
AciI CCGC 7 cut(s) 136, 139, 151, 310, 453, 639, 684
AclWI GGATC 2 cut(s) 208, 465
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 618
AfaI GTAC 6 cut(s) 95, 221, 230, 242, 493, 612
AfiI CCNNNNNNNGG 4 cut(s) 157, 190, 223, 393
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 3 cut(s) 259, 287, 623
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 5 cut(s) 130, 163, 334, 357, 574
AluI AGCT 5 cut(s) 130, 163, 334, 357, 574
Alw21I GWGCWC 3 cut(s) 132, 207, 433
Alw44I GTGCAC 1 cut(s) 429
AlwI GGATC 2 cut(s) 208, 465
AlwNI CAGNNNCTG 1 cut(s) 360
AoxI GGCC 3 cut(s) 66, 339, 345
ApaLI GTGCAC 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 5, 278
ApoI RAATTY 1 cut(s) 618
AspLEI GCGC 2 cut(s) 107, 317
AspS9I GGNCC 1 cut(s) 440
AvaII GGWCC 1 cut(s) 440
BaeGI GKGCMC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 132
BbsI GAAGAC 2 cut(s) 27, 93
Bbv12I GWGCWC 3 cut(s) 132, 207, 433
BbvI GCAGC 1 cut(s) 265
BccI CCATC 2 cut(s) 64, 77
BciT130I CCWGG 1 cut(s) 83
BfaI CTAG 1 cut(s) 567
BisI GCNGC 4 cut(s) 6, 139, 279, 639
BlsI GCNGC 4 cut(s) 7, 140, 280, 640
BmcAI AGTACT 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 199
BpiI GAAGAC 2 cut(s) 27, 93
BpuEI CTTGAG 4 cut(s) 140, 194, 320, 556
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 63, 81, 342
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 362, 392
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 190, 223, 393
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 3 cut(s) 194, 217, 239
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 3 cut(s) 63, 81, 342
BseGI GGATG 1 cut(s) 56
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 4 cut(s) 157, 190, 223, 393
BseMII CTCAG 2 cut(s) 458, 527
BseNI ACTGG 3 cut(s) 194, 217, 239
BseRI GAGGAG 2 cut(s) 18, 122
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 1 cut(s) 265
Bsh1236I CGCG 2 cut(s) 92, 105
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 3 cut(s) 68, 341, 347
BsiEI CGRYCG 1 cut(s) 146
BsiHKAI GWGCWC 3 cut(s) 132, 207, 433
BsiSI CCGG 1 cut(s) 142
BslI CCNNNNNNNGG 4 cut(s) 157, 190, 223, 393
BsnI GGCC 3 cut(s) 68, 341, 347
Bsp1286I GDGCHC 3 cut(s) 132, 207, 433
Bsp143I GATC 2 cut(s) 213, 470
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 7 cut(s) 136, 139, 151, 310, 453, 639, 684
BspANI GGCC 3 cut(s) 68, 341, 347
BspCNI CTCAG 2 cut(s) 459, 526
BspFNI CGCG 2 cut(s) 92, 105
BspPI GGATC 2 cut(s) 208, 465
BspQI GCTCTTC 1 cut(s) 628
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 3 cut(s) 194, 217, 239
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 3 cut(s) 63, 81, 342
BssMI GATC 2 cut(s) 213, 470
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 2 cut(s) 245, 496
Bst6I CTCTTC 1 cut(s) 628
BstC8I GCNNGC 2 cut(s) 409, 576
BstDEI CTNAG 2 cut(s) 467, 513
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 56
BstFNI CGCG 2 cut(s) 92, 105
BstHHI GCGC 2 cut(s) 107, 317
BstKTI GATC 2 cut(s) 216, 473
BstMBI GATC 2 cut(s) 213, 470
BstMCI CGRYCG 1 cut(s) 146
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 2 cut(s) 453, 524
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 433
BstUI CGCG 2 cut(s) 92, 105
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 2 cut(s) 27, 93
BstX2I RGATCY 2 cut(s) 213, 470
BstYI RGATCY 2 cut(s) 213, 470
BsuRI GGCC 3 cut(s) 68, 341, 347
BtgI CCRYGG 1 cut(s) 342
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 409, 576
CaiI CAGNNNCTG 1 cut(s) 360
CfoI GCGC 2 cut(s) 107, 317
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 440
CseI GACGC 1 cut(s) 98
Csp6I GTAC 6 cut(s) 94, 220, 229, 241, 492, 611
CviAII CATG 5 cut(s) 199, 343, 450, 521, 590
CviQI GTAC 6 cut(s) 94, 220, 229, 241, 492, 611
DdeI CTNAG 2 cut(s) 467, 513
DpnI GATC 2 cut(s) 215, 472
DpnII GATC 2 cut(s) 213, 470
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 628
EarI CTCTTC 1 cut(s) 628
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 440
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 5 cut(s) 202, 346, 453, 524, 593
FaiI YATR 9 cut(s) 200, 344, 417, 446, 451, 522, 591, 609, 660
FatI CATG 5 cut(s) 198, 342, 449, 520, 589
FauI CCCGC 1 cut(s) 446
Fnu4HI GCNGC 4 cut(s) 6, 139, 279, 639
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 4 cut(s) 6, 139, 279, 639
FspBI CTAG 1 cut(s) 567
GlaI GCGC 2 cut(s) 106, 316
GluI GCNGC 4 cut(s) 6, 139, 279, 639
HaeIII GGCC 3 cut(s) 68, 341, 347
HapII CCGG 1 cut(s) 142
HgaI GACGC 1 cut(s) 98
HhaI GCGC 2 cut(s) 107, 317
Hin1II CATG 5 cut(s) 202, 346, 453, 524, 593
Hin6I GCGC 2 cut(s) 105, 315
HinP1I GCGC 2 cut(s) 105, 315
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 1 cut(s) 383
HpaII CCGG 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 431, 499
Hpy188I TCNGA 2 cut(s) 382, 516
Hpy188III TCNNGA 3 cut(s) 211, 424, 505
Hpy8I GTNNAC 2 cut(s) 431, 499
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 6 cut(s) 32, 87, 281, 492, 502, 535
HpyCH4III ACNGT 2 cut(s) 245, 496
HpyCH4V TGCA 2 cut(s) 411, 431
HpyF3I CTNAG 2 cut(s) 467, 513
Hsp92II CATG 5 cut(s) 202, 346, 453, 524, 593
HspAI GCGC 2 cut(s) 105, 315
Kzo9I GATC 2 cut(s) 213, 470
LguI GCTCTTC 1 cut(s) 628
LmnI GCTCC 4 cut(s) 135, 160, 202, 583
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 1 cut(s) 567
MaeIII GTNAC 2 cut(s) 523, 556
MalI GATC 2 cut(s) 215, 472
MboI GATC 2 cut(s) 213, 470
MboII GAAGA 4 cut(s) 27, 98, 645, 689
MflI RGATCY 2 cut(s) 213, 470
MhlI GDGCHC 3 cut(s) 132, 207, 433
MluCI AATT 1 cut(s) 618
MluI ACGCGT 1 cut(s) 90
MseI TTAA 2 cut(s) 350, 552
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 2 cut(s) 92, 105
NcoI CCATGG 1 cut(s) 342
NdeII GATC 2 cut(s) 213, 470
NlaIII CATG 5 cut(s) 202, 346, 453, 524, 593
NmeAIII GCCGAG 1 cut(s) 44
NspI RCATGY 2 cut(s) 453, 524
PciSI GCTCTTC 1 cut(s) 628
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 4 cut(s) 7, 140, 280, 640
PpuMI RGGWCCY 1 cut(s) 440
Psp124BI GAGCTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspPI GGNCC 1 cut(s) 440
PspPPI RGGWCCY 1 cut(s) 440
PstNI CAGNNNCTG 1 cut(s) 360
PsuI RGATCY 2 cut(s) 213, 470
RsaI GTAC 6 cut(s) 95, 221, 230, 242, 493, 612
RsaNI GTAC 6 cut(s) 94, 220, 229, 241, 492, 611
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 628
SaqAI TTAA 2 cut(s) 350, 552
SatI GCNGC 4 cut(s) 6, 139, 279, 639
Sau3AI GATC 2 cut(s) 213, 470
Sau96I GGNCC 1 cut(s) 440
ScaI AGTACT 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 3 cut(s) 132, 207, 433
SinI GGWCC 1 cut(s) 440
SmlI CTYRAG 4 cut(s) 155, 209, 335, 535
SmoI CTYRAG 4 cut(s) 155, 209, 335, 535
Sse9I AATT 1 cut(s) 618
SsiI CCGC 7 cut(s) 136, 139, 151, 310, 453, 639, 684
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 245, 496
TasI AATT 1 cut(s) 618
TatI WGTACW 3 cut(s) 219, 228, 491
TauI GCSGC 2 cut(s) 141, 641
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 2 cut(s) 350, 552
Tru9I TTAA 2 cut(s) 350, 552
TseI GCWGC 2 cut(s) 5, 278
TspDTI ATGAA 2 cut(s) 187, 285
TspGWI ACGGA 1 cut(s) 21
VneI GTGCAC 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 1 cut(s) 618
XceI RCATGY 2 cut(s) 453, 524
XspI CTAG 1 cut(s) 567
ZrmI AGTACT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.