Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001489

Physical Location & Seq

Genomic Coordinates Reverse (-)

4184363 .. 4188115

Gene Structure 3753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1037500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCCTTTTATTAGGGCCAGAAGTTGTTTCCGACTCTCTCAAACACACGCACAGCCAAACAACCCTTACCCCCCTCTCCCCCACATCCCTCCTCCCATGGCTGCCTCTGGTTCCAAGACTCATGCTCCCTCTTGCTACAAACCTCCCAAGAACCCCATAACCCTCAATCCCATCCCTGAAACCCTAATCCCTAACCCTTCTACCTCTACAATCCCTCCTATCCCACCCTTCCAAGAAGAAATCGCCCTCTCACGCGCCTCCCACATCACGCGCGAACAGCTCCTCCGCCGCCGTTCCTACCTCCTCAAGCAACTCATCAAATGCTATAAAGCCCACTACTGGGCCCTCATGGAGGATCTCAGGATTTGGTACAGGGAGTACTGGTGGAAGTACGGCGTCAGCCCTTACAAAGAAGAGTACAGGAGCGAGAGAGACGCCGCTGGGGTTGCTGAAGGAACTGATGAGAACAATAACAACAACAATGGCGGTCCTGCGGCCGACTTCGATTCGAAAAAGAAACTGCAATGCGCTTTTAAAGAGTGCAAGACGAAGGCCATGGCAATGACGAGCTTTTGTCACCTCCATATTCTTTCGGATTCGAAGCAGAAGCTCTATAAGCCCTGTAGTTATGTTATTAAGAGTGCTCAGGCAATAACCTGCGGGAAGCCAATACTAAGATCTACTGTCCCTTCTCTTTGTACTTCTCACTTCCAAATGAATCAGAAGAATATCAGGAAGGCCTTGAAGAAAGCAGGCCTTAATAATACCTTATCAAGTAAGTTTGCTCCAACTTTCCATGTCGTATTAGCAGAATGTGTAAGCCAAATTAAGGCCAAACGAAGAACAGCACAAAGGGCAAGGGGAAAAAAAGTTGCAGTTAAGGAAGAAAACGCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3Hc3H

Protein Analysis

300

Amino Acids

33.87

Weight (kDa)

9.78

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC3H_KANSL2	PF13891	176 - 237	2.2e-17	KANL2-like, probable zinc-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05860 AT1G05860 AT1G05860 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT3G53860
fragaria_vesca	FvH4_2g08280 FvH4_2g08280 FvH4_2g08280 FvH4_4g11360
malus_domestica	MD04G1037400.v1.1 MD04G1037500.v1.1 MD04G1188100.v1.1
prunus_persica	Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1
pyrus_communis	pycom04g03050 pycom04g03060
rosa_chinensis	RchiOBHm_Chr4g0407911 RchiOBHm_Chr6g0263161 RchiOBHm_Chr6g0273581
rosa_laevigata	RLG00000008679 RLG00000008682 RLG00000014367
rosa_multiflora	Rmu_co8062746.1_g000001 Rmu_sc0002073.1_g000013 Rmu_sc0002481.1_g000059 Rmu_sc0041685.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430970 Rroxscaffold_5G00352520 Rroxscaffold_7G00204610
rosa_rugosa	Rorug04G0083000 Rorug04G0083100 Rorug06G0004000
rosa_samantha	Rh4AG147300 Rh4BG145000 Rh4CG154200 Rh4DG141400 Rh6AG123100 Rh6BG118100 Rh6CG116300 Rh6DG104800 Rh6DG186100
rosa_wichuraiana	Rw0G018640 Rw4G012090 Rw6G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	665
AccII	CGCG	3 cut(s)	255, 271, 273
AciI	CCGC	6 cut(s)	286, 289, 438, 486, 494, 660
AclWI	GGATC	1 cut(s)	363
AcoI	YGGCCR	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	471
AcyI	GRCGYC	2 cut(s)	396, 435
AfaI	GTAC	5 cut(s)	371, 380, 392, 419, 700
AfiI	CCNNNNNNNGG	4 cut(s)	339, 340, 352, 829
AgsI	TTSAA	1 cut(s)	745
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AluBI	AGCT	3 cut(s)	280, 570, 610
AluI	AGCT	3 cut(s)	280, 570, 610
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	363
AoxI	GGCC	7 cut(s)	15, 342, 495, 552, 738, 754, 831
ApaI	GGGCCC	1 cut(s)	346
ApeKI	GCWGC	1 cut(s)	101
AspLEI	GCGC	3 cut(s)	257, 273, 530
AspS9I	GGNCC	4 cut(s)	15, 342, 343, 488
AsuHPI	GGTGA	1 cut(s)	569
AsuII	TTCGAA	2 cut(s)	509, 599
AvaII	GGWCC	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	276, 409
BcoDI	GTCTC	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	622
BfuAI	ACCTGC	1 cut(s)	665
BglII	AGATCT	1 cut(s)	677
BisI	GCNGC	4 cut(s)	102, 289, 438, 495
BlsI	GCNGC	4 cut(s)	103, 290, 439, 496
BmcAI	AGTACT	1 cut(s)	380
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	4 cut(s)	15, 342, 343, 488
BmiI	GGNNCC	2 cut(s)	112, 344
BmrI	ACTGGG	1 cut(s)	349
BmuI	ACTGGG	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu14I	TTCGAA	2 cut(s)	509, 599
BpuEI	CTTGAG	1 cut(s)	290
BsaHI	GRCGYC	2 cut(s)	396, 435
BsaJI	CCNNGG	2 cut(s)	96, 555
BsaXI	ACNNNNNCTCC	8 cut(s)	109, 139, 199, 229, 267, 297, 368, 398
Bsc4I	CCNNNNNNNGG	4 cut(s)	339, 340, 352, 829
Bse1I	ACTGG	2 cut(s)	344, 386
Bse3DI	GCAATG	2 cut(s)	530, 567
BseDI	CCNNGG	2 cut(s)	96, 555
BseGI	GGATG	2 cut(s)	84, 171
BseLI	CCNNNNNNNGG	4 cut(s)	339, 340, 352, 829
BseMI	GCAATG	2 cut(s)	530, 567
BseMII	CTCAG	2 cut(s)	373, 659
BseNI	ACTGG	2 cut(s)	344, 386
BseRI	GAGGAG	3 cut(s)	81, 272, 293
BseSI	GKGCMC	1 cut(s)	346
BseX3I	CGGCCG	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	440
Bsh1236I	CGCG	3 cut(s)	255, 271, 273
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	7 cut(s)	17, 344, 497, 554, 740, 756, 833
BsiEI	CGRYCG	1 cut(s)	498
BsiHKAI	GWGCWC	1 cut(s)	646
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	4 cut(s)	339, 340, 352, 829
BsmAI	GTCTC	1 cut(s)	426
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	671
BsnI	GGCC	7 cut(s)	17, 344, 497, 554, 740, 756, 833
Bsp119I	TTCGAA	2 cut(s)	509, 599
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	346, 646
Bsp143I	GATC	2 cut(s)	355, 677
Bsp19I	CCATGG	2 cut(s)	96, 555
BspACI	CCGC	6 cut(s)	286, 289, 438, 486, 494, 660
BspANI	GGCC	7 cut(s)	17, 344, 497, 554, 740, 756, 833
BspCNI	CTCAG	2 cut(s)	372, 658
BspFNI	CGCG	3 cut(s)	255, 271, 273
BspLI	GGNNCC	2 cut(s)	112, 344
BspMI	ACCTGC	1 cut(s)	665
BspPI	GGATC	1 cut(s)	363
BspT104I	TTCGAA	2 cut(s)	509, 599
BsrDI	GCAATG	2 cut(s)	530, 567
BsrI	ACTGG	2 cut(s)	344, 386
BssECI	CCNNGG	2 cut(s)	96, 555
BssMI	GATC	2 cut(s)	355, 677
BssNI	GRCGYC	2 cut(s)	396, 435
BssT1I	CCWWGG	2 cut(s)	96, 555
Bst4CI	ACNGT	1 cut(s)	685
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	2 cut(s)	396, 435
BstBI	TTCGAA	2 cut(s)	509, 599
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	3 cut(s)	359, 645, 674
BstDSI	CCRYGG	2 cut(s)	96, 555
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	84, 171
BstFNI	CGCG	3 cut(s)	255, 271, 273
BstHHI	GCGC	3 cut(s)	257, 273, 530
BstKTI	GATC	2 cut(s)	358, 680
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	2 cut(s)	355, 677
BstMCI	CGRYCG	1 cut(s)	498
BstMWI	GCNNNNNNNGC	4 cut(s)	277, 446, 616, 854
BstSFI	CTRYAG	1 cut(s)	622
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	3 cut(s)	255, 271, 273
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	2 cut(s)	355, 677
BstYI	RGATCY	2 cut(s)	355, 677
BstZI	CGGCCG	1 cut(s)	495
BsuRI	GGCC	7 cut(s)	17, 344, 497, 554, 740, 756, 833
BtgI	CCRYGG	2 cut(s)	96, 555
BtsCI	GGATG	2 cut(s)	84, 171
BveI	ACCTGC	1 cut(s)	665
Cac8I	GCNNGC	1 cut(s)	754
CfoI	GCGC	3 cut(s)	257, 273, 530
Cfr13I	GGNCC	4 cut(s)	15, 342, 343, 488
CseI	GACGC	2 cut(s)	385, 443
Csp6I	GTAC	5 cut(s)	370, 379, 391, 418, 699
CviAII	CATG	5 cut(s)	97, 122, 349, 556, 797
CviQI	GTAC	5 cut(s)	370, 379, 391, 418, 699
DdeI	CTNAG	3 cut(s)	359, 645, 674
DpnI	GATC	2 cut(s)	357, 679
DpnII	GATC	2 cut(s)	355, 677
DraI	TTTAAA	1 cut(s)	535
EaeI	YGGCCR	1 cut(s)	495
EagI	CGGCCG	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
EciI	GGCGGA	1 cut(s)	275
EclXI	CGGCCG	1 cut(s)	495
Eco130I	CCWWGG	2 cut(s)	96, 555
Eco147I	AGGCCT	2 cut(s)	740, 756
Eco24I	GRGCYC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	488
Eco52I	CGGCCG	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	471
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	96, 555
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	2 cut(s)	96, 555
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	5 cut(s)	100, 125, 352, 559, 800
FalI	AAGNNNNNCTT	2 cut(s)	741, 773
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	5 cut(s)	96, 121, 348, 555, 796
FauI	CCCGC	1 cut(s)	653
Fnu4HI	GCNGC	4 cut(s)	102, 289, 438, 495
FokI	GGATG	2 cut(s)	71, 158
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	4 cut(s)	102, 289, 438, 495
GlaI	GCGC	3 cut(s)	256, 272, 529
GluI	GCNGC	4 cut(s)	102, 289, 438, 495
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	7 cut(s)	17, 344, 497, 554, 740, 756, 833
HgaI	GACGC	2 cut(s)	385, 443
HhaI	GCGC	3 cut(s)	257, 273, 530
Hin1I	GRCGYC	2 cut(s)	396, 435
Hin1II	CATG	5 cut(s)	100, 125, 352, 559, 800
Hin6I	GCGC	3 cut(s)	255, 271, 528
HinP1I	GCGC	3 cut(s)	255, 271, 528
HinfI	GANTC	5 cut(s)	33, 118, 506, 596, 718
HphI	GGTGA	1 cut(s)	569
Hpy188I	TCNGA	3 cut(s)	32, 595, 723
Hpy188III	TCNNGA	2 cut(s)	361, 733
HpyAV	CCTTC	6 cut(s)	207, 238, 446, 544, 699, 730
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4V	TGCA	3 cut(s)	523, 543, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	277, 446, 616, 854
HpyF3I	CTNAG	3 cut(s)	359, 645, 674
Hsp92I	GRCGYC	2 cut(s)	396, 435
Hsp92II	CATG	5 cut(s)	100, 125, 352, 559, 800
HspAI	GCGC	3 cut(s)	255, 271, 528
Kzo9I	GATC	2 cut(s)	355, 677
LmnI	GCTCC	4 cut(s)	130, 285, 423, 790
Lsp1109I	GCAGC	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	2 cut(s)	357, 679
MboI	GATC	2 cut(s)	355, 677
MboII	GAAGA	6 cut(s)	248, 425, 736, 757, 852, 896
MflI	RGATCY	2 cut(s)	355, 677
MhlI	GDGCHC	2 cut(s)	346, 646
MluCI	AATT	1 cut(s)	825
MlyI	GAGTC	2 cut(s)	27, 112
MmeI	TCCRAC	2 cut(s)	55, 812
MseI	TTAA	5 cut(s)	534, 636, 759, 828, 879
MslI	CAYNNNNRTG	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	440
MvnI	CGCG	3 cut(s)	255, 271, 273
MwoI	GCNNNNNNNGC	4 cut(s)	277, 446, 616, 854
NcoI	CCATGG	2 cut(s)	96, 555
NdeII	GATC	2 cut(s)	355, 677
NlaIII	CATG	5 cut(s)	100, 125, 352, 559, 800
NlaIV	GGNNCC	2 cut(s)	112, 344
NmuCI	GTSAC	1 cut(s)	575
NspV	TTCGAA	2 cut(s)	509, 599
PceI	AGGCCT	2 cut(s)	740, 756
PfeI	GAWTC	3 cut(s)	506, 596, 718
PkrI	GCNGC	4 cut(s)	103, 290, 439, 496
PleI	GAGTC	2 cut(s)	27, 112
PpsI	GAGTC	2 cut(s)	27, 112
PspFI	CCCAGC	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	112, 344
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	4 cut(s)	15, 342, 343, 488
PsuI	RGATCY	2 cut(s)	355, 677
RsaI	GTAC	5 cut(s)	371, 380, 392, 419, 700
RsaNI	GTAC	5 cut(s)	370, 379, 391, 418, 699
RseI	CAYNNNNRTG	1 cut(s)	560
SaqAI	TTAA	5 cut(s)	534, 636, 759, 828, 879
SatI	GCNGC	4 cut(s)	102, 289, 438, 495
Sau3AI	GATC	2 cut(s)	355, 677
Sau96I	GGNCC	4 cut(s)	15, 342, 343, 488
ScaI	AGTACT	1 cut(s)	380
SchI	GAGTC	2 cut(s)	27, 112
SduI	GDGCHC	2 cut(s)	346, 646
SetI	ASST	9 cut(s)	145, 206, 282, 303, 572, 582, 612, 659, 770
SfcI	CTRYAG	1 cut(s)	622
SfuI	TTCGAA	2 cut(s)	509, 599
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	825
SseBI	AGGCCT	2 cut(s)	740, 756
SsiI	CCGC	6 cut(s)	286, 289, 438, 486, 494, 660
StuI	AGGCCT	2 cut(s)	740, 756
StyI	CCWWGG	2 cut(s)	96, 555
TaaI	ACNGT	1 cut(s)	685
TaqI	TCGA	3 cut(s)	504, 509, 599
TasI	AATT	1 cut(s)	825
TatI	WGTACW	3 cut(s)	378, 417, 698
TauI	GCSGC	3 cut(s)	291, 440, 497
TfiI	GAWTC	3 cut(s)	506, 596, 718
Tru1I	TTAA	5 cut(s)	534, 636, 759, 828, 879
Tru9I	TTAA	5 cut(s)	534, 636, 759, 828, 879
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	488
XagI	CCTNNNNNAGG	1 cut(s)	350
ZrmI	AGTACT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.