Rh4BG145000

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001489
Physical Location & Seq
Forward (+)
25884589 .. 25887785
3197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG145000.1

Sequence Viewer

Length: 783 bp
ATGGCTGCTTCTGGTTCCAAGAACAACCACCCTCCTCCCTCTTCTTCCAAGCCTCCCAAGAACCAAATCGTCATCGCCGACCCACAAATCCCAAACCCCGGCCCCTCCACCTCCGCCATCACTCCATCCCGTGAAGACTTGGTCCTCTCACGCGCCTCCCACCTCACGCGCCAAGAGCTCCTCCGCCGCCGCTCCCACAACCTCAAGGAGCTGACGAAATGCTACAAAGACCACTACTGGGGGTTCATGGAGCACCTCAAGATCCAGTACAGGGAGTACTACTGGAAGTACGGTGTCAGCCCTTTCAAAGAAGACAACAACGCCACCACCACCAATAACAACAACAACAATGGGGTCGCTGCTGTTGAAGGCAGTGATGACAACCACAATAACAATCGCCGCTGCGCTTCCGTCGGCTGTAAGTTGAAGGCCATGGCCTTAACCAGCTTCTGCCACCTCCACATTCTTTCGGATTCGAAGCAGAGGCTCTACAAGGCTTGCAATTATGTTATCAAGAGTGCTCAGGCAGGACCTATAACATGTGGGAAGCCAATACTGAGATCCACTACCCCTTCTCTTTGTACTGTCCACTTCCAAAAGGCTCAGAAACATGTAACCAGGGCCTTGCGGAAGGCAGGGCTTAATGTTTCCTCATCAAGTAAGCTTGCTCCCAAGTTCCATGTGATAGTGGCAGAATATGTACGCCAAATCCAATCCACACGAAGAGCCGCACGAAAGGAAAATAAAAGTAAAGTTGCAATAAAGGAAGAAATTGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

260

Amino Acids

29.09

Weight (kDa)

9.9

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 135 - 198 6.1e-17 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 192
AccII CGCG 2 cut(s) 153, 169
AciI CCGC 7 cut(s) 114, 184, 187, 190, 400, 628, 729
AclWI GGATC 2 cut(s) 256, 555
AfaI GTAC 5 cut(s) 269, 278, 290, 583, 702
AfiI CCNNNNNNNGG 3 cut(s) 98, 238, 271
AflIII ACRYGT 2 cut(s) 539, 610
AgsI TTSAA 3 cut(s) 307, 368, 427
AjnI CCWGG 1 cut(s) 617
AluBI AGCT 4 cut(s) 178, 211, 447, 664
AluI AGCT 4 cut(s) 178, 211, 447, 664
Alw21I GWGCWC 3 cut(s) 180, 255, 523
AlwI GGATC 2 cut(s) 256, 555
AlwNI CAGNNNCTG 1 cut(s) 450
AoxI GGCC 4 cut(s) 100, 429, 435, 621
ApeKI GCWGC 3 cut(s) 5, 359, 402
AspLEI GCGC 3 cut(s) 155, 171, 407
AspS9I GGNCC 4 cut(s) 101, 142, 530, 621
AsuC2I CCSGG 1 cut(s) 99
AsuII TTCGAA 1 cut(s) 476
AvaII GGWCC 2 cut(s) 142, 530
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 2 cut(s) 141, 318
Bbv12I GWGCWC 3 cut(s) 180, 255, 523
BbvI GCAGC 2 cut(s) 346, 389
BccI CCATC 2 cut(s) 125, 133
BciT130I CCWGG 1 cut(s) 619
BcnI CCSGG 1 cut(s) 99
BisI GCNGC 7 cut(s) 6, 187, 190, 360, 400, 403, 729
BlsI GCNGC 7 cut(s) 7, 188, 191, 361, 401, 404, 730
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 2 cut(s) 99, 619
Bme18I GGWCC 2 cut(s) 142, 530
BmgT120I GGNCC 4 cut(s) 101, 142, 530, 621
BmiI GGNNCC 2 cut(s) 16, 103
BmrFI CCNGG 2 cut(s) 99, 619
BmrI ACTGGG 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 247
BpiI GAAGAC 2 cut(s) 141, 318
Bpu10I CCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 188, 242
BpuMI CCSGG 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 97, 432, 618
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 238, 271
Bse1I ACTGG 3 cut(s) 242, 265, 287
BseBI CCWGG 1 cut(s) 619
BseDI CCNNGG 3 cut(s) 97, 432, 618
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 3 cut(s) 98, 238, 271
BseMII CTCAG 3 cut(s) 536, 548, 617
BseNI ACTGG 3 cut(s) 242, 265, 287
BseRI GAGGAG 2 cut(s) 24, 170
BseXI GCAGC 2 cut(s) 346, 389
Bsh1236I CGCG 2 cut(s) 153, 169
BshFI GGCC 4 cut(s) 102, 431, 437, 623
BsiHKAI GWGCWC 3 cut(s) 180, 255, 523
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 3 cut(s) 98, 238, 271
BsnI GGCC 4 cut(s) 102, 431, 437, 623
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 180, 255, 523
Bsp143I GATC 2 cut(s) 261, 560
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 7 cut(s) 114, 184, 187, 190, 400, 628, 729
BspANI GGCC 4 cut(s) 102, 431, 437, 623
BspCNI CTCAG 3 cut(s) 535, 549, 616
BspFNI CGCG 2 cut(s) 153, 169
BspLI GGNNCC 2 cut(s) 16, 103
BspPI GGATC 2 cut(s) 256, 555
BspQI GCTCTTC 1 cut(s) 718
BspT104I TTCGAA 1 cut(s) 476
BsrBI CCGCTC 1 cut(s) 192
BsrI ACTGG 3 cut(s) 242, 265, 287
BssECI CCNNGG 3 cut(s) 97, 432, 618
BssMI GATC 2 cut(s) 261, 560
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 619
Bst4CI ACNGT 2 cut(s) 293, 586
Bst6I CTCTTC 2 cut(s) 46, 718
BstBI TTCGAA 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 499, 666
BstDEI CTNAG 3 cut(s) 522, 557, 603
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 1 cut(s) 125
BstFNI CGCG 2 cut(s) 153, 169
BstHHI GCGC 3 cut(s) 155, 171, 407
BstKTI GATC 2 cut(s) 264, 563
BstMBI GATC 2 cut(s) 261, 560
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 619
BstNSI RCATGY 2 cut(s) 543, 614
BstSCI CCNGG 2 cut(s) 97, 617
BstUI CGCG 2 cut(s) 153, 169
BstV1I GCAGC 2 cut(s) 346, 389
BstV2I GAAGAC 2 cut(s) 141, 318
BstX2I RGATCY 2 cut(s) 261, 560
BstYI RGATCY 2 cut(s) 261, 560
BsuRI GGCC 4 cut(s) 102, 431, 437, 623
BtgI CCRYGG 1 cut(s) 432
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 125
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 379
Cac8I GCNNGC 2 cut(s) 499, 666
CaiI CAGNNNCTG 1 cut(s) 450
CfoI GCGC 3 cut(s) 155, 171, 407
Cfr13I GGNCC 4 cut(s) 101, 142, 530, 621
Csp6I GTAC 5 cut(s) 268, 277, 289, 582, 701
CviAII CATG 5 cut(s) 247, 433, 540, 611, 680
CviQI GTAC 5 cut(s) 268, 277, 289, 582, 701
DdeI CTNAG 3 cut(s) 522, 557, 603
DpnI GATC 2 cut(s) 263, 562
DpnII GATC 2 cut(s) 261, 560
Eam1104I CTCTTC 2 cut(s) 46, 718
EarI CTCTTC 2 cut(s) 46, 718
EciI GGCGGA 2 cut(s) 103, 173
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 142, 530
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoO109I RGGNCCY 2 cut(s) 530, 621
EcoRII CCWGG 1 cut(s) 617
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 5 cut(s) 250, 436, 543, 614, 683
FaiI YATR 8 cut(s) 248, 434, 507, 536, 541, 612, 681, 699
FatI CATG 5 cut(s) 246, 432, 539, 610, 679
Fnu4HI GCNGC 7 cut(s) 6, 187, 190, 360, 400, 403, 729
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 7 cut(s) 6, 187, 190, 360, 400, 403, 729
GlaI GCGC 3 cut(s) 154, 170, 406
GluI GCNGC 7 cut(s) 6, 187, 190, 360, 400, 403, 729
HaeIII GGCC 4 cut(s) 102, 431, 437, 623
HapII CCGG 1 cut(s) 99
HhaI GCGC 3 cut(s) 155, 171, 407
Hin1II CATG 5 cut(s) 250, 436, 543, 614, 683
Hin6I GCGC 3 cut(s) 153, 169, 405
HinP1I GCGC 3 cut(s) 153, 169, 405
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 1 cut(s) 473
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 2 cut(s) 472, 606
Hpy188III TCNNGA 2 cut(s) 259, 514
Hpy8I GTNNAC 1 cut(s) 589
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 4 cut(s) 362, 421, 582, 625
HpyCH4III ACNGT 2 cut(s) 293, 586
HpyCH4V TGCA 2 cut(s) 501, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 3 cut(s) 522, 557, 603
Hsp92II CATG 5 cut(s) 250, 436, 543, 614, 683
HspAI GCGC 3 cut(s) 153, 169, 405
Kzo9I GATC 2 cut(s) 261, 560
LguI GCTCTTC 1 cut(s) 718
LmnI GCTCC 5 cut(s) 183, 197, 208, 250, 673
Lsp1109I GCAGC 2 cut(s) 346, 389
MaeIII GTNAC 1 cut(s) 613
MalI GATC 2 cut(s) 263, 562
MbiI CCGCTC 1 cut(s) 192
MboI GATC 2 cut(s) 261, 560
MboII GAAGA 6 cut(s) 33, 36, 146, 323, 735, 779
MflI RGATCY 2 cut(s) 261, 560
MhlI GDGCHC 3 cut(s) 180, 255, 523
MluCI AATT 2 cut(s) 502, 771
MseI TTAA 2 cut(s) 440, 642
MspA1I CMGCKG 1 cut(s) 402
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 99, 619
MvaI CCWGG 1 cut(s) 619
MvnI CGCG 2 cut(s) 153, 169
MwoI GCNNNNNNNGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 99
NcoI CCATGG 1 cut(s) 432
NdeII GATC 2 cut(s) 261, 560
NlaIII CATG 5 cut(s) 250, 436, 543, 614, 683
NlaIV GGNNCC 2 cut(s) 16, 103
NspI RCATGY 2 cut(s) 543, 614
NspV TTCGAA 1 cut(s) 476
PciI ACATGT 2 cut(s) 539, 610
PciSI GCTCTTC 1 cut(s) 718
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 473
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 7 cut(s) 7, 188, 191, 361, 401, 404, 730
PpuMI RGGWCCY 1 cut(s) 530
PscI ACATGT 2 cut(s) 539, 610
Psp124BI GAGCTC 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 617
PspGI CCWGG 1 cut(s) 617
PspN4I GGNNCC 2 cut(s) 16, 103
PspPI GGNCC 4 cut(s) 101, 142, 530, 621
PspPPI RGGWCCY 1 cut(s) 530
PstNI CAGNNNCTG 1 cut(s) 450
PsuI RGATCY 2 cut(s) 261, 560
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 5 cut(s) 269, 278, 290, 583, 702
RsaNI GTAC 5 cut(s) 268, 277, 289, 582, 701
SacI GAGCTC 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 718
SaqAI TTAA 2 cut(s) 440, 642
SatI GCNGC 7 cut(s) 6, 187, 190, 360, 400, 403, 729
Sau3AI GATC 2 cut(s) 261, 560
Sau96I GGNCC 4 cut(s) 101, 142, 530, 621
ScaI AGTACT 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 99, 619
SduI GDGCHC 3 cut(s) 180, 255, 523
SfuI TTCGAA 1 cut(s) 476
SinI GGWCC 2 cut(s) 142, 530
SmlI CTYRAG 2 cut(s) 203, 257
SmoI CTYRAG 2 cut(s) 203, 257
Sse9I AATT 2 cut(s) 502, 771
SsiI CCGC 7 cut(s) 114, 184, 187, 190, 400, 628, 729
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 97, 617
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 2 cut(s) 293, 586
TaqI TCGA 1 cut(s) 476
TasI AATT 2 cut(s) 502, 771
TatI WGTACW 3 cut(s) 267, 276, 581
TauI GCSGC 4 cut(s) 189, 192, 402, 731
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 2 cut(s) 440, 642
Tru9I TTAA 2 cut(s) 440, 642
TscAI CASTG 1 cut(s) 379
TseI GCWGC 3 cut(s) 5, 359, 402
TspDTI ATGAA 1 cut(s) 235
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 1 cut(s) 379
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 142, 530
XceI RCATGY 2 cut(s) 543, 614
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.