AT3G53860

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001489
Physical Location & Seq
Reverse (-)
19949557 .. 19951350
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53860.1

Sequence Viewer

Length: 846 bp
ATGGCGTCAGCTGCCAAGAACACTGAGCAAAACCCTTTCTCCTTGAAACCCCCAAGACCTCCGTCTTCCTCCAACGCTGCATCTTCCACCGCTGTGGCTTCCACTTCAGTTGAACCCCAAATTCGGAACCCTAAACCTAGCACAAACGTCTTACCATCGACCTCGAATTCACCGATTACGATGTTACAAGAAGATGAAATCCTCGCAAGCTCTAGTCACCTCACACGCCCAGAGCTTCTCCGACGCCGAGCAGACAACCTAAAGCAGCTGGCCAAGTGTTATAAAAACCATTATTGGGCTTTAATGGAGGATCTCAAGGCGCAACACAGGGATTATTGGTGTAAGTATGGGGTTAGTCAGTTTAAAGACGAACAAAATCAATCGAATAAGAGACGGAGGCTTGATCCAGAAGGTAGTGGAGATAAGGGTAATGATGGTGATCAGTATGCAAACAGCAATTCCGGGTTCTGTATGTATGGATGCAAAGCTAAAGCTATGGCGCTTACCAAATACTGTCAATTGCATATTCTCAAGGATAGTAAGCAGAAGCTCTACACTGGTTGCACAAACGTCATCAACAGATCTCCAGCAGGACCATTACTTTGTGGAAAACCAACACTAGCATCGACTGTTCCTGTACTGTGTAACGTGCACTACCAGAAAGCACAGAAGAATGTTGCCAAAGCTTTAAAAGATGCTGGTCACAATGTCTCTTCAACAAGCAAGCCTCCCCCAAAGCTCCATGTTATAGTAGCTGCATTTGTGCATCACATTCAAGCACAAAGAAAAAATCCACATAAGGAGGGTAAACTTAAAAGTGTAGTAAAGGAAGAAATGACAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

281

Amino Acids

31.02

Weight (kDa)

9.64

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 158 - 218 1.7e-14 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AciI CCGC 1 cut(s) 90
AclWI GGATC 2 cut(s) 318, 398
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 2 cut(s) 120, 166
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 2 cut(s) 5, 244
AfaI GTAC 1 cut(s) 639
AfiI CCNNNNNNNGG 2 cut(s) 123, 295
AgsI TTSAA 4 cut(s) 46, 113, 717, 776
AleI CACNNNNGTG 1 cut(s) 92
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 2 cut(s) 385, 715
Alw44I GTGCAC 1 cut(s) 650
AlwI GGATC 2 cut(s) 318, 398
AoxI GGCC 1 cut(s) 270
ApaLI GTGCAC 1 cut(s) 650
ApeKI GCWGC 4 cut(s) 11, 77, 265, 755
ApoI RAATTY 2 cut(s) 120, 166
ArsI GACNNNNNNTTYG 2 cut(s) 585, 617
AspLEI GCGC 2 cut(s) 322, 502
AspS9I GGNCC 1 cut(s) 593
AsuC2I CCSGG 1 cut(s) 463
AsuHPI GGTGA 3 cut(s) 162, 209, 449
AvaII GGWCC 1 cut(s) 593
BaeGI GKGCMC 1 cut(s) 654
BalI TGGCCA 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 3 cut(s) 64, 277, 742
BccI CCATC 2 cut(s) 163, 428
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 2 cut(s) 385, 715
BfaI CTAG 3 cut(s) 138, 213, 620
BfoI RGCGCY 1 cut(s) 503
BglII AGATCT 1 cut(s) 581
BisI GCNGC 4 cut(s) 12, 78, 266, 756
BlsI GCNGC 4 cut(s) 13, 79, 267, 757
Bme1390I CCNGG 1 cut(s) 463
Bme18I GGWCC 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 593
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 463
BmsI GCATC 5 cut(s) 89, 470, 632, 685, 775
BoxI GACNNNNGTC 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 570
BpuEI CTTGAG 2 cut(s) 299, 515
BpuMI CCSGG 1 cut(s) 463
BsaBI GATNNNNATC 1 cut(s) 438
BsaHI GRCGYC 2 cut(s) 5, 244
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 295
Bse1I ACTGG 1 cut(s) 562
Bse8I GATNNNNATC 1 cut(s) 438
BseGI GGATG 1 cut(s) 485
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 123, 295
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 562
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 3 cut(s) 64, 277, 742
BshFI GGCC 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 654
BsiSI CCGG 1 cut(s) 462
BslI CCNNNNNNNGG 2 cut(s) 123, 295
BsmAI GTCTC 2 cut(s) 385, 715
BsmBI CGTCTC 1 cut(s) 385
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 654
Bsp143I GATC 4 cut(s) 310, 403, 439, 581
BspACI CCGC 1 cut(s) 90
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 128
BspPI GGATC 2 cut(s) 318, 398
BsrI ACTGG 1 cut(s) 562
BssMI GATC 4 cut(s) 310, 403, 439, 581
BssNI GRCGYC 2 cut(s) 5, 244
Bst4CI ACNGT 3 cut(s) 515, 631, 642
Bst6I CTCTTC 1 cut(s) 718
BstACI GRCGYC 2 cut(s) 5, 244
BstC8I GCNNGC 3 cut(s) 208, 270, 725
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 485
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 2 cut(s) 322, 502
BstKTI GATC 4 cut(s) 313, 406, 442, 584
BstMAI GTCTC 2 cut(s) 385, 715
BstMBI GATC 4 cut(s) 310, 403, 439, 581
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstPAI GACNNNNGTC 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 461
BstSLI GKGCMC 1 cut(s) 654
BstV1I GCAGC 3 cut(s) 64, 277, 742
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 2 cut(s) 310, 581
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 2 cut(s) 310, 581
BsuRI GGCC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 485
BtsIMutI CAGTG 2 cut(s) 21, 555
Cac8I GCNNGC 3 cut(s) 208, 270, 725
CfoI GCGC 2 cut(s) 322, 502
Cfr13I GGNCC 1 cut(s) 593
CseI GACGC 1 cut(s) 252
Csp6I GTAC 1 cut(s) 638
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CviAII CATG 1 cut(s) 743
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 1 cut(s) 24
DpnI GATC 4 cut(s) 312, 405, 441, 583
DpnII GATC 4 cut(s) 310, 403, 439, 581
DraI TTTAAA 2 cut(s) 364, 690
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 718
EarI CTCTTC 1 cut(s) 718
Eco47I GGWCC 1 cut(s) 593
Eco57I CTGAAG 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 385
FaeI CATG 1 cut(s) 746
FatI CATG 1 cut(s) 742
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 4 cut(s) 12, 78, 266, 756
FokI GGATG 1 cut(s) 492
Fsp4HI GCNGC 4 cut(s) 12, 78, 266, 756
FspBI CTAG 3 cut(s) 138, 213, 620
GlaI GCGC 2 cut(s) 321, 501
GluI GCNGC 4 cut(s) 12, 78, 266, 756
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 1 cut(s) 272
HapII CCGG 1 cut(s) 462
HgaI GACGC 1 cut(s) 252
HhaI GCGC 2 cut(s) 322, 502
Hin1I GRCGYC 2 cut(s) 5, 244
Hin1II CATG 1 cut(s) 746
Hin6I GCGC 2 cut(s) 320, 500
HinP1I GCGC 2 cut(s) 320, 500
HindIII AAGCTT 1 cut(s) 684
HpaII CCGG 1 cut(s) 462
HphI GGTGA 3 cut(s) 162, 209, 449
Hpy166II GTNNAC 2 cut(s) 652, 809
Hpy188I TCNGA 2 cut(s) 126, 242
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 2 cut(s) 652, 809
Hpy99I CGWCG 1 cut(s) 246
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 3 cut(s) 515, 631, 642
HpyCH4IV ACGT 3 cut(s) 147, 570, 648
HpyCH4V TGCA 8 cut(s) 80, 449, 483, 523, 564, 652, 758, 766
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 3 cut(s) 147, 570, 648
Hsp92I GRCGYC 2 cut(s) 5, 244
Hsp92II CATG 1 cut(s) 746
HspAI GCGC 2 cut(s) 320, 500
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 4 cut(s) 310, 403, 439, 581
LmnI GCTCC 1 cut(s) 744
Lsp1109I GCAGC 3 cut(s) 64, 277, 742
LweI GCATC 5 cut(s) 89, 470, 632, 685, 775
MaeI CTAG 3 cut(s) 138, 213, 620
MaeII ACGT 3 cut(s) 147, 570, 648
MaeIII GTNAC 4 cut(s) 183, 215, 644, 701
MalI GATC 4 cut(s) 312, 405, 441, 583
MboI GATC 4 cut(s) 310, 403, 439, 581
MboII GAAGA 6 cut(s) 57, 75, 203, 682, 705, 842
MfeI CAATTG 1 cut(s) 518
MflI RGATCY 2 cut(s) 310, 581
MhlI GDGCHC 1 cut(s) 654
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 4 cut(s) 120, 166, 457, 518
MluNI TGGCCA 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 96, 265
MnlI CCTC 9 cut(s) 69, 79, 172, 212, 230, 301, 390, 738, 796
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MseI TTAA 4 cut(s) 302, 363, 689, 813
MslI CAYNNNNRTG 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 272
MspA1I CMGCKG 3 cut(s) 11, 92, 268
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 1 cut(s) 463
MunI CAATTG 1 cut(s) 518
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 463
NdeII GATC 4 cut(s) 310, 403, 439, 581
NlaIII CATG 1 cut(s) 746
NlaIV GGNNCC 1 cut(s) 128
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 215, 701
OliI CACNNNNGTG 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PkrI GCNGC 4 cut(s) 13, 79, 267, 757
PshAI GACNNNNGTC 1 cut(s) 61
PsiI TTATAA 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 593
PsuI RGATCY 2 cut(s) 310, 581
PvuII CAGCTG 2 cut(s) 11, 268
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 4 cut(s) 302, 363, 689, 813
SatI GCNGC 4 cut(s) 12, 78, 266, 756
Sau3AI GATC 4 cut(s) 310, 403, 439, 581
Sau96I GGNCC 1 cut(s) 593
ScrFI CCNGG 1 cut(s) 463
SduI GDGCHC 1 cut(s) 654
SfaNI GCATC 5 cut(s) 89, 470, 632, 685, 775
SinI GGWCC 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 2 cut(s) 314, 530
SmoI CTYRAG 2 cut(s) 314, 530
Sse9I AATT 4 cut(s) 120, 166, 457, 518
SsiI CCGC 1 cut(s) 90
SspMI CTAG 3 cut(s) 138, 213, 620
StyD4I CCNGG 1 cut(s) 461
TaaI ACNGT 3 cut(s) 515, 631, 642
TaiI ACGT 3 cut(s) 150, 573, 651
TaqI TCGA 4 cut(s) 158, 164, 383, 626
TasI AATT 4 cut(s) 120, 166, 457, 518
TatI WGTACW 1 cut(s) 637
Tru1I TTAA 4 cut(s) 302, 363, 689, 813
Tru9I TTAA 4 cut(s) 302, 363, 689, 813
TscAI CASTG 2 cut(s) 28, 562
TseFI GTSAC 2 cut(s) 215, 701
TseI GCWGC 4 cut(s) 11, 77, 265, 755
Tsp45I GTSAC 2 cut(s) 215, 701
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 2 cut(s) 51, 409
TspRI CASTG 2 cut(s) 28, 562
VneI GTGCAC 1 cut(s) 650
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 2 cut(s) 120, 166
XspI CTAG 3 cut(s) 138, 213, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.